Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RNU7-43P-201ENST00000516554 64 ntBASIC1.08□□□□□ -2.24
CPSF3Q9UKF6 DEFB108E-201ENST00000524692 240 ntBASIC1.08□□□□□ -2.24
CPSF3Q9UKF6 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.08□□□□□ -2.24
CPSF3Q9UKF6 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.08□□□□□ -2.24
CPSF3Q9UKF6 snoU18.1-201ENST00000629629 71 ntBASIC1.08□□□□□ -2.24
CPSF3Q9UKF6 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.08□□□□□ -2.24
CPSF3Q9UKF6 Y_RNA.422-201ENST00000384054 114 ntBASIC1.07□□□□□ -2.24
CPSF3Q9UKF6 RNU6-1160P-201ENST00000384546 104 ntBASIC1.07□□□□□ -2.24
CPSF3Q9UKF6 SNORD28B-201ENST00000390993 75 ntBASIC1.07□□□□□ -2.24
CPSF3Q9UKF6 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.07□□□□□ -2.24
CPSF3Q9UKF6 AP003716.2-201ENST00000528260 108 ntBASIC1.07□□□□□ -2.24
CPSF3Q9UKF6 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
CPSF3Q9UKF6 SNORA25.3-201ENST00000363205 127 ntBASIC1.06□□□□□ -2.24
CPSF3Q9UKF6 RNU1-93P-201ENST00000364704 169 ntBASIC1.06□□□□□ -2.24
CPSF3Q9UKF6 Y_RNA.376-201ENST00000365638 108 ntBASIC1.06□□□□□ -2.24
CPSF3Q9UKF6 SNORA80D-201ENST00000384488 135 ntBASIC1.06□□□□□ -2.24
CPSF3Q9UKF6 AC063976.4-201ENST00000421971 163 ntBASIC1.06□□□□□ -2.24
CPSF3Q9UKF6 AC002429.1-201ENST00000437672 148 ntBASIC1.06□□□□□ -2.24
CPSF3Q9UKF6 RN7SKP164-201ENST00000516138 266 ntBASIC1.06□□□□□ -2.24
CPSF3Q9UKF6 RNU6-830P-201ENST00000516353 107 ntBASIC1.06□□□□□ -2.24
CPSF3Q9UKF6 RNU6-635P-201ENST00000516651 102 ntBASIC1.06□□□□□ -2.24
CPSF3Q9UKF6 Y_RNA.720-201ENST00000517166 92 ntBASIC1.06□□□□□ -2.24
CPSF3Q9UKF6 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.06□□□□□ -2.24
CPSF3Q9UKF6 MIR548AR-201ENST00000582191 57 ntBASIC1.06□□□□□ -2.24
CPSF3Q9UKF6 AC006441.5-201ENST00000612680 209 ntBASIC1.06□□□□□ -2.24
CPSF3Q9UKF6 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.06□□□□□ -2.24
CPSF3Q9UKF6 RNA5SP264-201ENST00000363115 107 ntBASIC1.05□□□□□ -2.24
CPSF3Q9UKF6 Y_RNA.275-201ENST00000364726 110 ntBASIC1.05□□□□□ -2.24
CPSF3Q9UKF6 Y_RNA.293-201ENST00000364908 93 ntBASIC1.05□□□□□ -2.24
CPSF3Q9UKF6 MIR548F4-201ENST00000408515 105 ntBASIC1.05□□□□□ -2.24
CPSF3Q9UKF6 RNU7-21P-201ENST00000459430 62 ntBASIC1.05□□□□□ -2.24
CPSF3Q9UKF6 TRBVB-201ENST00000477100 408 ntBASIC1.05□□□□□ -2.24
CPSF3Q9UKF6 MIR4661-201ENST00000582720 75 ntBASIC1.05□□□□□ -2.24
CPSF3Q9UKF6 AC006504.6-201ENST00000590142 199 ntBASIC1.05□□□□□ -2.24
CPSF3Q9UKF6 MIR6504-201ENST00000613520 61 ntBASIC1.05□□□□□ -2.24
CPSF3Q9UKF6 Pinc.1-201ENST00000616452 154 ntBASIC1.05□□□□□ -2.24
CPSF3Q9UKF6 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.05□□□□□ -2.24
CPSF3Q9UKF6 MIR367-201ENST00000362299 68 ntBASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 RNU6-694P-201ENST00000364071 147 ntBASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 RNU4-10P-201ENST00000364383 140 ntBASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 Y_RNA.237-201ENST00000364439 102 ntBASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 SNORA63C-201ENST00000364578 129 ntBASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 RNU6-713P-201ENST00000384761 107 ntBASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 RNA5SP496-201ENST00000391240 109 ntBASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 MIR1185-1-201ENST00000408598 86 ntBASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 RNU7-149P-201ENST00000516739 59 ntBASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 MIR4724-201ENST00000579485 89 ntBASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 AL049861.1-201ENST00000603130 150 ntBASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 Y_RNA.812-201ENST00000610788 101 ntBASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 Y_RNA.784-201ENST00000613803 101 ntBASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 Y_RNA.787-201ENST00000616522 101 ntBASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 uc_338.4-201ENST00000616635 176 ntBASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 Y_RNA.780-201ENST00000617336 101 ntBASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 Y_RNA.801-201ENST00000619005 101 ntBASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 AC015726.2-201ENST00000620112 122 ntBASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.04□□□□□ -2.24
CPSF3Q9UKF6 AC008163.1-202ENST00000636004 2889 ntBASIC1.03□□□□□ -2.24
CPSF3Q9UKF6 Y_RNA.14-201ENST00000362415 103 ntBASIC1.03□□□□□ -2.24
CPSF3Q9UKF6 Y_RNA.117-201ENST00000363294 101 ntBASIC1.03□□□□□ -2.24
CPSF3Q9UKF6 SNORA63-201ENST00000363450 132 ntBASIC1.03□□□□□ -2.24
CPSF3Q9UKF6 RNU6-211P-201ENST00000384047 107 ntBASIC1.03□□□□□ -2.24
CPSF3Q9UKF6 RNU6-1289P-201ENST00000384431 106 ntBASIC1.03□□□□□ -2.24
CPSF3Q9UKF6 MIR606-201ENST00000384851 96 ntBASIC1.03□□□□□ -2.24
CPSF3Q9UKF6 MT-TW-201ENST00000387382 68 ntBASIC1.03□□□□□ -2.24
CPSF3Q9UKF6 POLR2J4-204ENST00000418424 324 ntBASIC1.03□□□□□ -2.24
CPSF3Q9UKF6 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.03□□□□□ -2.24
CPSF3Q9UKF6 RNU6-1007P-201ENST00000516586 107 ntBASIC1.03□□□□□ -2.24
CPSF3Q9UKF6 AC008133.2-201ENST00000624540 351 ntBASIC1.03□□□□□ -2.24
CPSF3Q9UKF6 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
CPSF3Q9UKF6 MIR103A2-201ENST00000362154 78 ntBASIC1.02□□□□□ -2.25
CPSF3Q9UKF6 RNU6-238P-201ENST00000363313 106 ntBASIC1.02□□□□□ -2.25
CPSF3Q9UKF6 RNA5SP48-201ENST00000363969 126 ntBASIC1.02□□□□□ -2.25
CPSF3Q9UKF6 Y_RNA.238-201ENST00000364441 102 ntBASIC1.02□□□□□ -2.25
CPSF3Q9UKF6 SNORA25.9-201ENST00000365087 128 ntBASIC1.02□□□□□ -2.25
CPSF3Q9UKF6 Y_RNA.483-201ENST00000384380 101 ntBASIC1.02□□□□□ -2.25
CPSF3Q9UKF6 MIR532-201ENST00000385025 91 ntBASIC1.02□□□□□ -2.25
CPSF3Q9UKF6 MIR526A2-201ENST00000390198 65 ntBASIC1.02□□□□□ -2.25
CPSF3Q9UKF6 U8.17-201ENST00000391292 132 ntBASIC1.02□□□□□ -2.25
CPSF3Q9UKF6 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.02□□□□□ -2.25
CPSF3Q9UKF6 SNORD124-201ENST00000459577 104 ntBASIC1.02□□□□□ -2.25
CPSF3Q9UKF6 RNU4-57P-201ENST00000515980 135 ntBASIC1.02□□□□□ -2.25
CPSF3Q9UKF6 RNU7-181P-201ENST00000517234 74 ntBASIC1.02□□□□□ -2.25
CPSF3Q9UKF6 AC103810.9-201ENST00000606688 112 ntBASIC1.02□□□□□ -2.25
CPSF3Q9UKF6 MIR8062-201ENST00000621515 85 ntBASIC1.02□□□□□ -2.25
CPSF3Q9UKF6 MIR373-201ENST00000362273 69 ntBASIC1.01□□□□□ -2.25
CPSF3Q9UKF6 Y_RNA.44-201ENST00000362676 108 ntBASIC1.01□□□□□ -2.25
CPSF3Q9UKF6 RNU6-1187P-201ENST00000364771 110 ntBASIC1.01□□□□□ -2.25
CPSF3Q9UKF6 Y_RNA.572-201ENST00000384757 98 ntBASIC1.01□□□□□ -2.25
CPSF3Q9UKF6 MIR570-201ENST00000384917 97 ntBASIC1.01□□□□□ -2.25
CPSF3Q9UKF6 RNU6-651P-201ENST00000411040 105 ntBASIC1.01□□□□□ -2.25
CPSF3Q9UKF6 MTCO2P24-201ENST00000515611 426 ntBASIC1.01□□□□□ -2.25
CPSF3Q9UKF6 RNU7-25P-201ENST00000516544 62 ntBASIC1.01□□□□□ -2.25
CPSF3Q9UKF6 RNU6-113P-201ENST00000516653 101 ntBASIC1.01□□□□□ -2.25
CPSF3Q9UKF6 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.01□□□□□ -2.25
CPSF3Q9UKF6 Y_RNA.802-201ENST00000614892 130 ntBASIC1.01□□□□□ -2.25
CPSF3Q9UKF6 U2.14-201ENST00000615943 113 ntBASIC1.01□□□□□ -2.25
CPSF3Q9UKF6 MIR4251-201ENST00000635819 61 ntBASIC1.01□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 293.1 ms