Protein–RNA interactions for Protein: Q9NXS3

KLHL28, Kelch-like protein 28, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL28Q9NXS3 AL603910.2-201ENST00000407268 136 ntBASIC0.5□□□□□ -2.33
KLHL28Q9NXS3 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.5□□□□□ -2.33
KLHL28Q9NXS3 SNORA36B-201ENST00000410438 131 ntBASIC0.5□□□□□ -2.33
KLHL28Q9NXS3 RNU11-2P-201ENST00000516898 142 ntBASIC0.5□□□□□ -2.33
KLHL28Q9NXS3 AC018659.1-201ENST00000551083 169 ntBASIC0.5□□□□□ -2.33
KLHL28Q9NXS3 RPL23AP91-201ENST00000569211 455 ntBASIC0.5□□□□□ -2.33
KLHL28Q9NXS3 AC008507.4-201ENST00000585464 127 ntBASIC0.5□□□□□ -2.33
KLHL28Q9NXS3 AL512605.2-201ENST00000592972 256 ntBASIC0.5□□□□□ -2.33
KLHL28Q9NXS3 AL080274.1-201ENST00000605565 220 ntBASIC0.5□□□□□ -2.33
KLHL28Q9NXS3 AL136317.1-201ENST00000612653 226 ntBASIC0.5□□□□□ -2.33
KLHL28Q9NXS3 Y_RNA.804-201ENST00000615262 101 ntBASIC0.5□□□□□ -2.33
KLHL28Q9NXS3 AC007742.2-201ENST00000618226 398 ntBASIC0.5□□□□□ -2.33
KLHL28Q9NXS3 uc_338.22-201ENST00000622722 187 ntBASIC0.5□□□□□ -2.33
KLHL28Q9NXS3 MIR6516-201ENST00000630554 81 ntBASIC0.5□□□□□ -2.33
KLHL28Q9NXS3 MIR4251-201ENST00000635819 61 ntBASIC0.5□□□□□ -2.33
KLHL28Q9NXS3 MIR369-201ENST00000362155 70 ntBASIC0.49□□□□□ -2.33
KLHL28Q9NXS3 Y_RNA.31-201ENST00000362574 102 ntBASIC0.49□□□□□ -2.33
KLHL28Q9NXS3 RNU4-50P-201ENST00000364361 141 ntBASIC0.49□□□□□ -2.33
KLHL28Q9NXS3 RNU6-442P-201ENST00000383968 104 ntBASIC0.49□□□□□ -2.33
KLHL28Q9NXS3 Y_RNA.418-201ENST00000384029 102 ntBASIC0.49□□□□□ -2.33
KLHL28Q9NXS3 Y_RNA.419-201ENST00000384041 102 ntBASIC0.49□□□□□ -2.33
KLHL28Q9NXS3 SNORA72.4-201ENST00000384174 132 ntBASIC0.49□□□□□ -2.33
KLHL28Q9NXS3 RNU6-102P-201ENST00000384485 104 ntBASIC0.49□□□□□ -2.33
KLHL28Q9NXS3 SNORD111-201ENST00000408139 94 ntBASIC0.49□□□□□ -2.33
KLHL28Q9NXS3 AC024067.1-201ENST00000426199 223 ntBASIC0.49□□□□□ -2.33
KLHL28Q9NXS3 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.49□□□□□ -2.33
KLHL28Q9NXS3 POLR2KP2-201ENST00000438155 177 ntBASIC0.49□□□□□ -2.33
KLHL28Q9NXS3 AC067940.1-201ENST00000458411 300 ntBASIC0.49□□□□□ -2.33
KLHL28Q9NXS3 RNU6-437P-201ENST00000459408 95 ntBASIC0.49□□□□□ -2.33
KLHL28Q9NXS3 RNU7-181P-201ENST00000517234 74 ntBASIC0.49□□□□□ -2.33
KLHL28Q9NXS3 MIR4711-201ENST00000578274 70 ntBASIC0.49□□□□□ -2.33
KLHL28Q9NXS3 AC005357.1-201ENST00000588399 301 ntBASIC0.49□□□□□ -2.33
KLHL28Q9NXS3 AC012433.1-201ENST00000588916 398 ntBASIC0.49□□□□□ -2.33
KLHL28Q9NXS3 AL133255.1-201ENST00000606374 441 ntBASIC0.49□□□□□ -2.33
KLHL28Q9NXS3 Pinc.1-201ENST00000616452 154 ntBASIC0.49□□□□□ -2.33
KLHL28Q9NXS3 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 SNORD38C-201ENST00000384381 69 ntBASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 RNU6-1067P-201ENST00000384752 107 ntBASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 MIR193B-201ENST00000384907 83 ntBASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 Y_RNA.645-201ENST00000391229 102 ntBASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 U8.17-201ENST00000391292 132 ntBASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 MTCO2P33-201ENST00000402100 465 ntBASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 MIR1302-11-201ENST00000408051 138 ntBASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 MIR1302-9-201ENST00000408365 138 ntBASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 MIR1302-10-201ENST00000408734 138 ntBASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 RNA5SP193-201ENST00000410353 107 ntBASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 MTND4P19-201ENST00000446659 478 ntBASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 SNORD11-201ENST00000459124 84 ntBASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 SEPT14P8-201ENST00000508026 178 ntBASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 RNU6-397P-201ENST00000516226 104 ntBASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 RNU6-191P-201ENST00000516295 94 ntBASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 MIR1302-2-201ENST00000607096 138 ntBASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 MIR5087-201ENST00000635826 76 ntBASIC0.48□□□□□ -2.33
KLHL28Q9NXS3 SNORD113-8-201ENST00000363497 74 ntBASIC0.47□□□□□ -2.33
KLHL28Q9NXS3 SNORD18A-201ENST00000363753 72 ntBASIC0.47□□□□□ -2.33
KLHL28Q9NXS3 RNU6-674P-201ENST00000363831 107 ntBASIC0.47□□□□□ -2.33
KLHL28Q9NXS3 Y_RNA.222-201ENST00000364264 102 ntBASIC0.47□□□□□ -2.33
KLHL28Q9NXS3 RNU6-945P-201ENST00000383947 107 ntBASIC0.47□□□□□ -2.33
KLHL28Q9NXS3 RNU1-119P-201ENST00000391122 165 ntBASIC0.47□□□□□ -2.33
KLHL28Q9NXS3 Y_RNA.602-201ENST00000410535 92 ntBASIC0.47□□□□□ -2.33
KLHL28Q9NXS3 AC244098.3-201ENST00000424803 96 ntBASIC0.47□□□□□ -2.33
KLHL28Q9NXS3 AC092628.1-201ENST00000436250 252 ntBASIC0.47□□□□□ -2.33
KLHL28Q9NXS3 AL157398.1-201ENST00000452981 186 ntBASIC0.47□□□□□ -2.33
KLHL28Q9NXS3 RNU6-496P-201ENST00000516145 99 ntBASIC0.47□□□□□ -2.33
KLHL28Q9NXS3 RNU6-830P-201ENST00000516353 107 ntBASIC0.47□□□□□ -2.33
KLHL28Q9NXS3 MIR4300-201ENST00000581016 96 ntBASIC0.47□□□□□ -2.33
KLHL28Q9NXS3 AC087685.1-201ENST00000587507 141 ntBASIC0.47□□□□□ -2.33
KLHL28Q9NXS3 SNORD113-5-201ENST00000607261 78 ntBASIC0.47□□□□□ -2.33
KLHL28Q9NXS3 Y_RNA.105-201ENST00000363182 111 ntBASIC0.46□□□□□ -2.34
KLHL28Q9NXS3 RNU6-450P-201ENST00000364654 107 ntBASIC0.46□□□□□ -2.34
KLHL28Q9NXS3 Y_RNA.395-201ENST00000383945 109 ntBASIC0.46□□□□□ -2.34
KLHL28Q9NXS3 Y_RNA.526-201ENST00000384572 110 ntBASIC0.46□□□□□ -2.34
KLHL28Q9NXS3 MIR802-201ENST00000390235 94 ntBASIC0.46□□□□□ -2.34
KLHL28Q9NXS3 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.46□□□□□ -2.34
KLHL28Q9NXS3 RNU6-763P-201ENST00000390865 106 ntBASIC0.46□□□□□ -2.34
KLHL28Q9NXS3 RNU6-994P-201ENST00000410507 111 ntBASIC0.46□□□□□ -2.34
KLHL28Q9NXS3 HSPE1P25-201ENST00000455484 251 ntBASIC0.46□□□□□ -2.34
KLHL28Q9NXS3 RNU4-57P-201ENST00000515980 135 ntBASIC0.46□□□□□ -2.34
KLHL28Q9NXS3 RNU6-475P-201ENST00000516073 104 ntBASIC0.46□□□□□ -2.34
KLHL28Q9NXS3 RNU6-764P-201ENST00000516396 105 ntBASIC0.46□□□□□ -2.34
KLHL28Q9NXS3 Y_RNA.713-201ENST00000517013 96 ntBASIC0.46□□□□□ -2.34
KLHL28Q9NXS3 MIR548AO-201ENST00000579992 96 ntBASIC0.46□□□□□ -2.34
KLHL28Q9NXS3 RAC1P9-201ENST00000604990 392 ntBASIC0.46□□□□□ -2.34
KLHL28Q9NXS3 AC015726.2-201ENST00000620112 122 ntBASIC0.46□□□□□ -2.34
KLHL28Q9NXS3 SNORD113.3-201ENST00000364630 78 ntBASIC0.45□□□□□ -2.34
KLHL28Q9NXS3 SNORD42.2-201ENST00000365570 69 ntBASIC0.45□□□□□ -2.34
KLHL28Q9NXS3 SNORA2B-201ENST00000384583 137 ntBASIC0.45□□□□□ -2.34
KLHL28Q9NXS3 RNU6-383P-201ENST00000410864 94 ntBASIC0.45□□□□□ -2.34
KLHL28Q9NXS3 PMCHL1-202ENST00000423102 261 ntBASIC0.45□□□□□ -2.34
KLHL28Q9NXS3 MRPS35P2-201ENST00000508242 191 ntBASIC0.45□□□□□ -2.34
KLHL28Q9NXS3 RNU6-897P-201ENST00000517135 105 ntBASIC0.45□□□□□ -2.34
KLHL28Q9NXS3 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.45□□□□□ -2.34
KLHL28Q9NXS3 MIR1273G-201ENST00000577677 100 ntBASIC0.45□□□□□ -2.34
KLHL28Q9NXS3 AC011195.1-201ENST00000578177 177 ntBASIC0.45□□□□□ -2.34
KLHL28Q9NXS3 MIR2681-201ENST00000581814 105 ntBASIC0.45□□□□□ -2.34
KLHL28Q9NXS3 AC104695.3-201ENST00000604052 296 ntBASIC0.45□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 374.9 ms