Protein–RNA interactions for Protein: Q9NQ69

LHX9, LIM/homeobox protein Lhx9, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX9Q9NQ69 MIR6866-201ENST00000638146 69 ntBASIC0.73□□□□□ -2.29
LHX9Q9NQ69 AC008163.1-202ENST00000636004 2889 ntBASIC0.72□□□□□ -2.29
LHX9Q9NQ69 HSBP1P2-201ENST00000299671 229 ntBASIC0.72□□□□□ -2.29
LHX9Q9NQ69 Y_RNA.16-201ENST00000362421 102 ntBASIC0.72□□□□□ -2.29
LHX9Q9NQ69 Y_RNA.136-201ENST00000363444 102 ntBASIC0.72□□□□□ -2.29
LHX9Q9NQ69 SNORD114-26-201ENST00000363543 72 ntBASIC0.72□□□□□ -2.29
LHX9Q9NQ69 Y_RNA.153-201ENST00000363615 91 ntBASIC0.72□□□□□ -2.29
LHX9Q9NQ69 RNU6-969P-201ENST00000383900 105 ntBASIC0.72□□□□□ -2.29
LHX9Q9NQ69 RNU6-383P-201ENST00000410864 94 ntBASIC0.72□□□□□ -2.29
LHX9Q9NQ69 AC002429.1-201ENST00000437672 148 ntBASIC0.72□□□□□ -2.29
LHX9Q9NQ69 HMGN2P32-201ENST00000444648 269 ntBASIC0.72□□□□□ -2.29
LHX9Q9NQ69 RNU6-1132P-201ENST00000459214 107 ntBASIC0.72□□□□□ -2.29
LHX9Q9NQ69 SNORD123-201ENST00000459473 70 ntBASIC0.72□□□□□ -2.29
LHX9Q9NQ69 SNORD124-201ENST00000459577 104 ntBASIC0.72□□□□□ -2.29
LHX9Q9NQ69 SNORD116-28-201ENST00000516123 91 ntBASIC0.72□□□□□ -2.29
LHX9Q9NQ69 Y_RNA.714-201ENST00000517065 90 ntBASIC0.72□□□□□ -2.29
LHX9Q9NQ69 AC133485.1-201ENST00000567176 124 ntBASIC0.72□□□□□ -2.29
LHX9Q9NQ69 AC138907.6-201ENST00000568401 126 ntBASIC0.72□□□□□ -2.29
LHX9Q9NQ69 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.72□□□□□ -2.29
LHX9Q9NQ69 MIR4764-201ENST00000580680 88 ntBASIC0.72□□□□□ -2.29
LHX9Q9NQ69 MIR4653-201ENST00000585107 83 ntBASIC0.72□□□□□ -2.29
LHX9Q9NQ69 AL391903.3-201ENST00000612158 163 ntBASIC0.72□□□□□ -2.29
LHX9Q9NQ69 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.72□□□□□ -2.29
LHX9Q9NQ69 RNU6-290P-201ENST00000365212 101 ntBASIC0.71□□□□□ -2.3
LHX9Q9NQ69 Y_RNA.380-201ENST00000365663 111 ntBASIC0.71□□□□□ -2.3
LHX9Q9NQ69 RNU6-662P-201ENST00000384253 104 ntBASIC0.71□□□□□ -2.3
LHX9Q9NQ69 MIR570-201ENST00000384917 97 ntBASIC0.71□□□□□ -2.3
LHX9Q9NQ69 MIR802-201ENST00000390235 94 ntBASIC0.71□□□□□ -2.3
LHX9Q9NQ69 SNORD28B-201ENST00000390993 75 ntBASIC0.71□□□□□ -2.3
LHX9Q9NQ69 RNU6-1248P-201ENST00000391096 64 ntBASIC0.71□□□□□ -2.3
LHX9Q9NQ69 AC063976.4-201ENST00000421971 163 ntBASIC0.71□□□□□ -2.3
LHX9Q9NQ69 AC245047.8-201ENST00000456455 284 ntBASIC0.71□□□□□ -2.3
LHX9Q9NQ69 Y_RNA.637-201ENST00000459424 114 ntBASIC0.71□□□□□ -2.3
LHX9Q9NQ69 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.71□□□□□ -2.3
LHX9Q9NQ69 PRELID3BP2-201ENST00000605362 201 ntBASIC0.71□□□□□ -2.3
LHX9Q9NQ69 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.71□□□□□ -2.3
LHX9Q9NQ69 Y_RNA.36-201ENST00000362602 112 ntBASIC0.7□□□□□ -2.3
LHX9Q9NQ69 RNU6-674P-201ENST00000363831 107 ntBASIC0.7□□□□□ -2.3
LHX9Q9NQ69 RNU1-124P-201ENST00000363861 145 ntBASIC0.7□□□□□ -2.3
LHX9Q9NQ69 RNU6-899P-201ENST00000363947 107 ntBASIC0.7□□□□□ -2.3
LHX9Q9NQ69 Y_RNA.330-201ENST00000365230 109 ntBASIC0.7□□□□□ -2.3
LHX9Q9NQ69 SNORA80D-201ENST00000384488 135 ntBASIC0.7□□□□□ -2.3
LHX9Q9NQ69 AL603910.2-201ENST00000407268 136 ntBASIC0.7□□□□□ -2.3
LHX9Q9NQ69 POLR2J4-204ENST00000418424 324 ntBASIC0.7□□□□□ -2.3
LHX9Q9NQ69 SNORD11-201ENST00000459124 84 ntBASIC0.7□□□□□ -2.3
LHX9Q9NQ69 AC091959.1-201ENST00000495857 238 ntBASIC0.7□□□□□ -2.3
LHX9Q9NQ69 AP003733.2-201ENST00000529409 171 ntBASIC0.7□□□□□ -2.3
LHX9Q9NQ69 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.7□□□□□ -2.3
LHX9Q9NQ69 MIR548AR-201ENST00000582191 57 ntBASIC0.7□□□□□ -2.3
LHX9Q9NQ69 AC008507.4-201ENST00000585464 127 ntBASIC0.7□□□□□ -2.3
LHX9Q9NQ69 AL512605.2-201ENST00000592972 256 ntBASIC0.7□□□□□ -2.3
LHX9Q9NQ69 AC013244.2-201ENST00000603396 103 ntBASIC0.7□□□□□ -2.3
LHX9Q9NQ69 AL355297.3-201ENST00000604082 446 ntBASIC0.7□□□□□ -2.3
LHX9Q9NQ69 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.7□□□□□ -2.3
LHX9Q9NQ69 MIR103A2-201ENST00000362154 78 ntBASIC0.69□□□□□ -2.3
LHX9Q9NQ69 RNA5SP264-201ENST00000363115 107 ntBASIC0.69□□□□□ -2.3
LHX9Q9NQ69 RNU6-1205P-201ENST00000363625 106 ntBASIC0.69□□□□□ -2.3
LHX9Q9NQ69 Y_RNA.202-201ENST00000364083 110 ntBASIC0.69□□□□□ -2.3
LHX9Q9NQ69 RNU6-268P-201ENST00000364174 107 ntBASIC0.69□□□□□ -2.3
LHX9Q9NQ69 Y_RNA.393-201ENST00000383936 102 ntBASIC0.69□□□□□ -2.3
LHX9Q9NQ69 RNU6-442P-201ENST00000383968 104 ntBASIC0.69□□□□□ -2.3
LHX9Q9NQ69 SNORD38C-201ENST00000384381 69 ntBASIC0.69□□□□□ -2.3
LHX9Q9NQ69 MIR508-201ENST00000384857 115 ntBASIC0.69□□□□□ -2.3
LHX9Q9NQ69 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.69□□□□□ -2.3
LHX9Q9NQ69 MIR1185-1-201ENST00000408598 86 ntBASIC0.69□□□□□ -2.3
LHX9Q9NQ69 BTF3P11-201ENST00000426582 477 ntBASIC0.69□□□□□ -2.3
LHX9Q9NQ69 SNRPGP14-201ENST00000435400 219 ntBASIC0.69□□□□□ -2.3
LHX9Q9NQ69 MTCYBP6-201ENST00000441810 138 ntBASIC0.69□□□□□ -2.3
LHX9Q9NQ69 RNU7-21P-201ENST00000459430 62 ntBASIC0.69□□□□□ -2.3
LHX9Q9NQ69 RNU2-31P-201ENST00000516954 155 ntBASIC0.69□□□□□ -2.3
LHX9Q9NQ69 SCARNA24.2-201ENST00000516968 130 ntBASIC0.69□□□□□ -2.3
LHX9Q9NQ69 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.69□□□□□ -2.3
LHX9Q9NQ69 SNORA25.1-201ENST00000362326 128 ntBASIC0.68□□□□□ -2.3
LHX9Q9NQ69 RNU6-1272P-201ENST00000362776 107 ntBASIC0.68□□□□□ -2.3
LHX9Q9NQ69 RNU4-10P-201ENST00000364383 140 ntBASIC0.68□□□□□ -2.3
LHX9Q9NQ69 SNORA33.2-201ENST00000365413 134 ntBASIC0.68□□□□□ -2.3
LHX9Q9NQ69 MIR19B1-201ENST00000384829 87 ntBASIC0.68□□□□□ -2.3
LHX9Q9NQ69 AC113618.1-201ENST00000416747 285 ntBASIC0.68□□□□□ -2.3
LHX9Q9NQ69 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.68□□□□□ -2.3
LHX9Q9NQ69 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.68□□□□□ -2.3
LHX9Q9NQ69 RNU6-570P-201ENST00000517051 105 ntBASIC0.68□□□□□ -2.3
LHX9Q9NQ69 RNU7-181P-201ENST00000517234 74 ntBASIC0.68□□□□□ -2.3
LHX9Q9NQ69 AC023827.1-201ENST00000569247 97 ntBASIC0.68□□□□□ -2.3
LHX9Q9NQ69 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.68□□□□□ -2.3
LHX9Q9NQ69 MIR2681-201ENST00000581814 105 ntBASIC0.68□□□□□ -2.3
LHX9Q9NQ69 MIR4661-201ENST00000582720 75 ntBASIC0.68□□□□□ -2.3
LHX9Q9NQ69 AL590095.2-201ENST00000604136 117 ntBASIC0.68□□□□□ -2.3
LHX9Q9NQ69 AC013791.1-201ENST00000616619 62 ntBASIC0.68□□□□□ -2.3
LHX9Q9NQ69 AC007742.2-201ENST00000618226 398 ntBASIC0.68□□□□□ -2.3
LHX9Q9NQ69 AC015726.2-201ENST00000620112 122 ntBASIC0.68□□□□□ -2.3
LHX9Q9NQ69 Y_RNA.84-201ENST00000363011 104 ntBASIC0.67□□□□□ -2.3
LHX9Q9NQ69 Y_RNA.293-201ENST00000364908 93 ntBASIC0.67□□□□□ -2.3
LHX9Q9NQ69 RNU6-514P-201ENST00000384208 107 ntBASIC0.67□□□□□ -2.3
LHX9Q9NQ69 Y_RNA.512-201ENST00000384518 102 ntBASIC0.67□□□□□ -2.3
LHX9Q9NQ69 MIR15B-201ENST00000385045 98 ntBASIC0.67□□□□□ -2.3
LHX9Q9NQ69 SNORD12-201ENST00000391002 90 ntBASIC0.67□□□□□ -2.3
LHX9Q9NQ69 SNORA53-201ENST00000391141 249 ntBASIC0.67□□□□□ -2.3
LHX9Q9NQ69 RNU6-985P-201ENST00000410182 104 ntBASIC0.67□□□□□ -2.3
LHX9Q9NQ69 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.67□□□□□ -2.3
LHX9Q9NQ69 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 124 ms