Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC2.41□□□□□ -2.02
NKX2-4Q9H2Z4 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.41□□□□□ -2.02
NKX2-4Q9H2Z4 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
NKX2-4Q9H2Z4 RNU6-1290P-201ENST00000362957 109 ntBASIC2.41□□□□□ -2.02
NKX2-4Q9H2Z4 RNU6-112P-201ENST00000363599 104 ntBASIC2.41□□□□□ -2.02
NKX2-4Q9H2Z4 RNA5SP205-201ENST00000364653 136 ntBASIC2.41□□□□□ -2.02
NKX2-4Q9H2Z4 Y_RNA.294-201ENST00000364916 102 ntBASIC2.41□□□□□ -2.02
NKX2-4Q9H2Z4 SNORD77.3-201ENST00000391113 65 ntBASIC2.41□□□□□ -2.02
NKX2-4Q9H2Z4 CALM2P4-201ENST00000430810 426 ntBASIC2.41□□□□□ -2.02
NKX2-4Q9H2Z4 RNU7-34P-201ENST00000459394 64 ntBASIC2.41□□□□□ -2.02
NKX2-4Q9H2Z4 RNA5SP481-201ENST00000516814 122 ntBASIC2.41□□□□□ -2.02
NKX2-4Q9H2Z4 SNORA31.25-201ENST00000517242 134 ntBASIC2.41□□□□□ -2.02
NKX2-4Q9H2Z4 RNA5SP437-201ENST00000517249 129 ntBASIC2.41□□□□□ -2.02
NKX2-4Q9H2Z4 AC090049.2-201ENST00000550377 109 ntBASIC2.41□□□□□ -2.02
NKX2-4Q9H2Z4 MIR6845-201ENST00000613182 61 ntBASIC2.41□□□□□ -2.02
NKX2-4Q9H2Z4 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.41□□□□□ -2.02
NKX2-4Q9H2Z4 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.41□□□□□ -2.02
NKX2-4Q9H2Z4 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
NKX2-4Q9H2Z4 MIRLET7C-201ENST00000362160 84 ntBASIC2.4□□□□□ -2.03
NKX2-4Q9H2Z4 SNORD115-28-201ENST00000363931 81 ntBASIC2.4□□□□□ -2.03
NKX2-4Q9H2Z4 SNORD38C-201ENST00000384381 69 ntBASIC2.4□□□□□ -2.03
NKX2-4Q9H2Z4 RNU6-1031P-201ENST00000384773 107 ntBASIC2.4□□□□□ -2.03
NKX2-4Q9H2Z4 RNA5SP450-201ENST00000411206 102 ntBASIC2.4□□□□□ -2.03
NKX2-4Q9H2Z4 AC108667.1-201ENST00000428618 249 ntBASIC2.4□□□□□ -2.03
NKX2-4Q9H2Z4 AF228730.3-201ENST00000436691 102 ntBASIC2.4□□□□□ -2.03
NKX2-4Q9H2Z4 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.4□□□□□ -2.03
NKX2-4Q9H2Z4 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.4□□□□□ -2.03
NKX2-4Q9H2Z4 RN7SKP179-201ENST00000516126 217 ntBASIC2.4□□□□□ -2.03
NKX2-4Q9H2Z4 RNU2-60P-201ENST00000517290 128 ntBASIC2.4□□□□□ -2.03
NKX2-4Q9H2Z4 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.4□□□□□ -2.03
NKX2-4Q9H2Z4 AC067747.1-201ENST00000608026 250 ntBASIC2.4□□□□□ -2.03
NKX2-4Q9H2Z4 AC015726.2-201ENST00000620112 122 ntBASIC2.4□□□□□ -2.03
NKX2-4Q9H2Z4 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.4□□□□□ -2.03
NKX2-4Q9H2Z4 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
NKX2-4Q9H2Z4 RNU6-235P-201ENST00000362644 107 ntBASIC2.39□□□□□ -2.03
NKX2-4Q9H2Z4 Y_RNA.410-201ENST00000383992 113 ntBASIC2.39□□□□□ -2.03
NKX2-4Q9H2Z4 RNU6-296P-201ENST00000384608 107 ntBASIC2.39□□□□□ -2.03
NKX2-4Q9H2Z4 Y_RNA.547-201ENST00000384654 119 ntBASIC2.39□□□□□ -2.03
NKX2-4Q9H2Z4 U8.16-201ENST00000391279 133 ntBASIC2.39□□□□□ -2.03
NKX2-4Q9H2Z4 RNU6-735P-201ENST00000410612 107 ntBASIC2.39□□□□□ -2.03
NKX2-4Q9H2Z4 RNA5SP168-201ENST00000516642 112 ntBASIC2.39□□□□□ -2.03
NKX2-4Q9H2Z4 RNU6-826P-201ENST00000516827 104 ntBASIC2.39□□□□□ -2.03
NKX2-4Q9H2Z4 MIR4709-201ENST00000577272 72 ntBASIC2.39□□□□□ -2.03
NKX2-4Q9H2Z4 MIR3121-201ENST00000579680 77 ntBASIC2.39□□□□□ -2.03
NKX2-4Q9H2Z4 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.39□□□□□ -2.03
NKX2-4Q9H2Z4 MTND5P32-201ENST00000560711 1802 ntBASIC2.39□□□□□ -2.03
NKX2-4Q9H2Z4 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
NKX2-4Q9H2Z4 RNU6-424P-201ENST00000384367 105 ntBASIC2.38□□□□□ -2.03
NKX2-4Q9H2Z4 Y_RNA.508-201ENST00000384502 114 ntBASIC2.38□□□□□ -2.03
NKX2-4Q9H2Z4 Y_RNA.629-201ENST00000411368 105 ntBASIC2.38□□□□□ -2.03
NKX2-4Q9H2Z4 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.38□□□□□ -2.03
NKX2-4Q9H2Z4 AL445646.1-201ENST00000431784 216 ntBASIC2.38□□□□□ -2.03
NKX2-4Q9H2Z4 RNU7-107P-201ENST00000459121 61 ntBASIC2.38□□□□□ -2.03
NKX2-4Q9H2Z4 snoU13.27-201ENST00000459278 104 ntBASIC2.38□□□□□ -2.03
NKX2-4Q9H2Z4 RNU6-659P-201ENST00000516454 104 ntBASIC2.38□□□□□ -2.03
NKX2-4Q9H2Z4 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.38□□□□□ -2.03
NKX2-4Q9H2Z4 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC2.38□□□□□ -2.03
NKX2-4Q9H2Z4 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.38□□□□□ -2.03
NKX2-4Q9H2Z4 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.37□□□□□ -2.03
NKX2-4Q9H2Z4 Z82195.2-201ENST00000612348 18351 ntBASIC2.37□□□□□ -2.03
NKX2-4Q9H2Z4 Y_RNA.114-201ENST00000363265 113 ntBASIC2.37□□□□□ -2.03
NKX2-4Q9H2Z4 RNU6-309P-201ENST00000364573 106 ntBASIC2.37□□□□□ -2.03
NKX2-4Q9H2Z4 RNU6-1189P-201ENST00000383958 107 ntBASIC2.37□□□□□ -2.03
NKX2-4Q9H2Z4 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.37□□□□□ -2.03
NKX2-4Q9H2Z4 RNU7-12P-201ENST00000516030 62 ntBASIC2.37□□□□□ -2.03
NKX2-4Q9H2Z4 SCARNA16.3-201ENST00000516595 184 ntBASIC2.37□□□□□ -2.03
NKX2-4Q9H2Z4 RNU6-1149P-201ENST00000516810 97 ntBASIC2.37□□□□□ -2.03
NKX2-4Q9H2Z4 MIR5197-201ENST00000583721 112 ntBASIC2.37□□□□□ -2.03
NKX2-4Q9H2Z4 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.37□□□□□ -2.03
NKX2-4Q9H2Z4 AC007336.1-201ENST00000576365 3828 ntBASIC2.37□□□□□ -2.03
NKX2-4Q9H2Z4 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.36□□□□□ -2.03
NKX2-4Q9H2Z4 Y_RNA.37-201ENST00000362606 108 ntBASIC2.36□□□□□ -2.03
NKX2-4Q9H2Z4 RNU6-833P-201ENST00000363486 107 ntBASIC2.36□□□□□ -2.03
NKX2-4Q9H2Z4 MIR524-201ENST00000385242 87 ntBASIC2.36□□□□□ -2.03
NKX2-4Q9H2Z4 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.36□□□□□ -2.03
NKX2-4Q9H2Z4 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.36□□□□□ -2.03
NKX2-4Q9H2Z4 AL158147.1-201ENST00000443970 75 ntBASIC2.36□□□□□ -2.03
NKX2-4Q9H2Z4 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.36□□□□□ -2.03
NKX2-4Q9H2Z4 AL022345.2-201ENST00000606307 135 ntBASIC2.36□□□□□ -2.03
NKX2-4Q9H2Z4 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.36□□□□□ -2.03
NKX2-4Q9H2Z4 RNU6-508P-201ENST00000363231 103 ntBASIC2.35□□□□□ -2.03
NKX2-4Q9H2Z4 RNU6-647P-201ENST00000364243 107 ntBASIC2.35□□□□□ -2.03
NKX2-4Q9H2Z4 RNA5SP100-201ENST00000410903 110 ntBASIC2.35□□□□□ -2.03
NKX2-4Q9H2Z4 RNA5SP59-201ENST00000410922 110 ntBASIC2.35□□□□□ -2.03
NKX2-4Q9H2Z4 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC2.35□□□□□ -2.03
NKX2-4Q9H2Z4 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.35□□□□□ -2.03
NKX2-4Q9H2Z4 AC133485.4-201ENST00000561835 220 ntBASIC2.35□□□□□ -2.03
NKX2-4Q9H2Z4 AC138907.4-201ENST00000570107 226 ntBASIC2.35□□□□□ -2.03
NKX2-4Q9H2Z4 MIR5194-201ENST00000582634 120 ntBASIC2.35□□□□□ -2.03
NKX2-4Q9H2Z4 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC2.35□□□□□ -2.03
NKX2-4Q9H2Z4 AC078899.2-201ENST00000595282 212 ntBASIC2.35□□□□□ -2.03
NKX2-4Q9H2Z4 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.35□□□□□ -2.03
NKX2-4Q9H2Z4 AC245884.12-201ENST00000615364 59 ntBASIC2.35□□□□□ -2.03
NKX2-4Q9H2Z4 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.35□□□□□ -2.03
NKX2-4Q9H2Z4 MIR6766-201ENST00000622641 72 ntBASIC2.35□□□□□ -2.03
NKX2-4Q9H2Z4 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.35□□□□□ -2.03
NKX2-4Q9H2Z4 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.03
NKX2-4Q9H2Z4 Y_RNA.273-201ENST00000364703 102 ntBASIC2.34□□□□□ -2.03
NKX2-4Q9H2Z4 Y_RNA.280-201ENST00000364765 112 ntBASIC2.34□□□□□ -2.03
NKX2-4Q9H2Z4 MIR583-201ENST00000384846 75 ntBASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 223 ms