Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
TRAIPQ9BWF2 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.61□□□□□ -1.99
TRAIPQ9BWF2 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
TRAIPQ9BWF2 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.61□□□□□ -1.99
TRAIPQ9BWF2 MIR518F-201ENST00000384973 87 ntBASIC2.61□□□□□ -1.99
TRAIPQ9BWF2 RNA5SP127-201ENST00000411051 133 ntBASIC2.61□□□□□ -1.99
TRAIPQ9BWF2 AL365205.2-201ENST00000594586 68 ntBASIC2.61□□□□□ -1.99
TRAIPQ9BWF2 AC067747.1-201ENST00000608026 250 ntBASIC2.61□□□□□ -1.99
TRAIPQ9BWF2 AC046143.2-201ENST00000609789 160 ntBASIC2.61□□□□□ -1.99
TRAIPQ9BWF2 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
TRAIPQ9BWF2 RNU6-818P-201ENST00000364837 108 ntBASIC2.6□□□□□ -1.99
TRAIPQ9BWF2 MIR526A1-201ENST00000384897 85 ntBASIC2.6□□□□□ -1.99
TRAIPQ9BWF2 U8.17-201ENST00000391292 132 ntBASIC2.6□□□□□ -1.99
TRAIPQ9BWF2 SNX2P2-201ENST00000424553 323 ntBASIC2.6□□□□□ -1.99
TRAIPQ9BWF2 AC026436.1-201ENST00000510537 270 ntBASIC2.6□□□□□ -1.99
TRAIPQ9BWF2 SNORA18.7-201ENST00000516910 131 ntBASIC2.6□□□□□ -1.99
TRAIPQ9BWF2 AC007751.1-201ENST00000529260 376 ntBASIC2.6□□□□□ -1.99
TRAIPQ9BWF2 MIR5007-201ENST00000583098 95 ntBASIC2.6□□□□□ -1.99
TRAIPQ9BWF2 AL513534.2-201ENST00000603836 250 ntBASIC2.6□□□□□ -1.99
TRAIPQ9BWF2 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.6□□□□□ -1.99
TRAIPQ9BWF2 RNU6-1292P-201ENST00000383856 107 ntBASIC2.59□□□□□ -1.99
TRAIPQ9BWF2 RNU6-1189P-201ENST00000383958 107 ntBASIC2.59□□□□□ -1.99
TRAIPQ9BWF2 RN7SKP223-201ENST00000410582 62 ntBASIC2.59□□□□□ -1.99
TRAIPQ9BWF2 AC005908.1-201ENST00000468701 347 ntBASIC2.59□□□□□ -1.99
TRAIPQ9BWF2 MIR1273D-201ENST00000577266 86 ntBASIC2.59□□□□□ -1.99
TRAIPQ9BWF2 MIR3937-201ENST00000580135 106 ntBASIC2.59□□□□□ -1.99
TRAIPQ9BWF2 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC2.58□□□□□ -2
TRAIPQ9BWF2 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
TRAIPQ9BWF2 Y_RNA.37-201ENST00000362606 108 ntBASIC2.58□□□□□ -2
TRAIPQ9BWF2 U8.2-201ENST00000363156 134 ntBASIC2.58□□□□□ -2
TRAIPQ9BWF2 RNU4-11P-201ENST00000365287 132 ntBASIC2.58□□□□□ -2
TRAIPQ9BWF2 RNU6-1130P-201ENST00000365434 107 ntBASIC2.58□□□□□ -2
TRAIPQ9BWF2 SNORA1-201ENST00000384107 130 ntBASIC2.58□□□□□ -2
TRAIPQ9BWF2 AC092991.1-201ENST00000477176 376 ntBASIC2.58□□□□□ -2
TRAIPQ9BWF2 AC112693.2-201ENST00000556538 232 ntBASIC2.58□□□□□ -2
TRAIPQ9BWF2 AL357312.1-201ENST00000603879 298 ntBASIC2.58□□□□□ -2
TRAIPQ9BWF2 Y_RNA.241-201ENST00000364470 117 ntBASIC2.57□□□□□ -2
TRAIPQ9BWF2 MIR548M-201ENST00000408260 86 ntBASIC2.57□□□□□ -2
TRAIPQ9BWF2 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.57□□□□□ -2
TRAIPQ9BWF2 SNORD123-201ENST00000459473 70 ntBASIC2.57□□□□□ -2
TRAIPQ9BWF2 RNU6-917P-201ENST00000516294 104 ntBASIC2.57□□□□□ -2
TRAIPQ9BWF2 RNU7-70P-201ENST00000516941 66 ntBASIC2.57□□□□□ -2
TRAIPQ9BWF2 AP003484.1-201ENST00000530974 250 ntBASIC2.57□□□□□ -2
TRAIPQ9BWF2 MIR4648-201ENST00000580107 72 ntBASIC2.57□□□□□ -2
TRAIPQ9BWF2 AC092881.1-201ENST00000638218 2733 ntBASIC2.56□□□□□ -2
TRAIPQ9BWF2 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.56□□□□□ -2
TRAIPQ9BWF2 Y_RNA.400-201ENST00000383963 111 ntBASIC2.56□□□□□ -2
TRAIPQ9BWF2 MIR548A2-201ENST00000384956 97 ntBASIC2.56□□□□□ -2
TRAIPQ9BWF2 MIR653-201ENST00000385279 96 ntBASIC2.56□□□□□ -2
TRAIPQ9BWF2 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.56□□□□□ -2
TRAIPQ9BWF2 AF228730.3-201ENST00000436691 102 ntBASIC2.56□□□□□ -2
TRAIPQ9BWF2 AL021397.1-201ENST00000451806 248 ntBASIC2.56□□□□□ -2
TRAIPQ9BWF2 snoU13.15-201ENST00000459407 104 ntBASIC2.56□□□□□ -2
TRAIPQ9BWF2 RNA5SP281-201ENST00000516504 135 ntBASIC2.56□□□□□ -2
TRAIPQ9BWF2 AC104984.5-201ENST00000586878 94 ntBASIC2.56□□□□□ -2
TRAIPQ9BWF2 AL137847.3-201ENST00000611521 109 ntBASIC2.56□□□□□ -2
TRAIPQ9BWF2 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC2.56□□□□□ -2
TRAIPQ9BWF2 MIR3658-201ENST00000636291 56 ntBASIC2.56□□□□□ -2
TRAIPQ9BWF2 Y_RNA.170-201ENST00000363746 110 ntBASIC2.55□□□□□ -2
TRAIPQ9BWF2 SNORD1A-201ENST00000364968 72 ntBASIC2.55□□□□□ -2
TRAIPQ9BWF2 Y_RNA.370-201ENST00000365589 108 ntBASIC2.55□□□□□ -2
TRAIPQ9BWF2 MIR624-201ENST00000385217 97 ntBASIC2.55□□□□□ -2
TRAIPQ9BWF2 RNU6-588P-201ENST00000410281 105 ntBASIC2.55□□□□□ -2
TRAIPQ9BWF2 RNU6-922P-201ENST00000516753 99 ntBASIC2.55□□□□□ -2
TRAIPQ9BWF2 SNORA74.3-201ENST00000517108 154 ntBASIC2.55□□□□□ -2
TRAIPQ9BWF2 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC2.55□□□□□ -2
TRAIPQ9BWF2 MIR4422-201ENST00000581938 83 ntBASIC2.55□□□□□ -2
TRAIPQ9BWF2 Y_RNA.343-201ENST00000365354 112 ntBASIC2.54□□□□□ -2
TRAIPQ9BWF2 SNORD18B-201ENST00000365659 72 ntBASIC2.54□□□□□ -2
TRAIPQ9BWF2 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.54□□□□□ -2
TRAIPQ9BWF2 RNU4-57P-201ENST00000515980 135 ntBASIC2.54□□□□□ -2
TRAIPQ9BWF2 RNU6-255P-201ENST00000516957 105 ntBASIC2.54□□□□□ -2
TRAIPQ9BWF2 RNU7-181P-201ENST00000517234 74 ntBASIC2.54□□□□□ -2
TRAIPQ9BWF2 AC019176.1-201ENST00000518519 225 ntBASIC2.54□□□□□ -2
TRAIPQ9BWF2 IGKV3-31-201ENST00000523109 329 ntBASIC2.54□□□□□ -2
TRAIPQ9BWF2 AL365434.2-201ENST00000607979 234 ntBASIC2.54□□□□□ -2
TRAIPQ9BWF2 SNORA70.7-201ENST00000384159 133 ntBASIC2.53□□□□□ -2
TRAIPQ9BWF2 Y_RNA.488-201ENST00000384403 102 ntBASIC2.53□□□□□ -2
TRAIPQ9BWF2 SNORA40.5-201ENST00000391061 128 ntBASIC2.53□□□□□ -2
TRAIPQ9BWF2 MIR934-201ENST00000401241 83 ntBASIC2.53□□□□□ -2
TRAIPQ9BWF2 AL023284.1-201ENST00000403956 276 ntBASIC2.53□□□□□ -2
TRAIPQ9BWF2 RNU7-200P-201ENST00000516105 62 ntBASIC2.53□□□□□ -2
TRAIPQ9BWF2 RNU7-43P-201ENST00000516554 64 ntBASIC2.53□□□□□ -2
TRAIPQ9BWF2 MTND5P41-201ENST00000517498 206 ntBASIC2.53□□□□□ -2
TRAIPQ9BWF2 MIR548X2-201ENST00000579776 100 ntBASIC2.53□□□□□ -2
TRAIPQ9BWF2 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.53□□□□□ -2
TRAIPQ9BWF2 MIR520C-201ENST00000385005 87 ntBASIC2.52□□□□□ -2.01
TRAIPQ9BWF2 SNORD77.3-201ENST00000391113 65 ntBASIC2.52□□□□□ -2.01
TRAIPQ9BWF2 AL627390.1-201ENST00000396055 340 ntBASIC2.52□□□□□ -2.01
TRAIPQ9BWF2 RPL39P39-201ENST00000455840 151 ntBASIC2.52□□□□□ -2.01
TRAIPQ9BWF2 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.52□□□□□ -2.01
TRAIPQ9BWF2 MIR3124-201ENST00000582636 67 ntBASIC2.52□□□□□ -2.01
TRAIPQ9BWF2 MIR6715A-201ENST00000615929 79 ntBASIC2.52□□□□□ -2.01
TRAIPQ9BWF2 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
TRAIPQ9BWF2 MIR21-201ENST00000362134 72 ntBASIC2.51□□□□□ -2.01
TRAIPQ9BWF2 SNORD115-34-201ENST00000362441 82 ntBASIC2.51□□□□□ -2.01
TRAIPQ9BWF2 SNORD115-12-201ENST00000362583 82 ntBASIC2.51□□□□□ -2.01
TRAIPQ9BWF2 SNORD115-29-201ENST00000362834 82 ntBASIC2.51□□□□□ -2.01
TRAIPQ9BWF2 SNORD115-9-201ENST00000362912 82 ntBASIC2.51□□□□□ -2.01
TRAIPQ9BWF2 SNORD115-21-201ENST00000362963 81 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms