Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC244636.1-201ENST00000421152 228 ntBASIC2.17□□□□□ -2.06
CCDC140Q96MF4 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC140Q96MF4 RNU7-67P-201ENST00000459003 62 ntBASIC2.17□□□□□ -2.06
CCDC140Q96MF4 SNORD123-201ENST00000459473 70 ntBASIC2.17□□□□□ -2.06
CCDC140Q96MF4 MIR7106-201ENST00000612419 65 ntBASIC2.17□□□□□ -2.06
CCDC140Q96MF4 AC091932.4-201ENST00000623386 200 ntBASIC2.17□□□□□ -2.06
CCDC140Q96MF4 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
CCDC140Q96MF4 AC080100.1-201ENST00000624239 5356 ntBASIC2.17□□□□□ -2.06
CCDC140Q96MF4 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
CCDC140Q96MF4 MIR26A1-201ENST00000362205 77 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 RNU6-1123P-201ENST00000362347 106 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-34-201ENST00000362441 82 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-12-201ENST00000362583 82 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-29-201ENST00000362834 82 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-9-201ENST00000362912 82 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-21-201ENST00000362963 81 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-14-201ENST00000363090 81 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-13-201ENST00000363358 82 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-41-201ENST00000363608 82 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-11-201ENST00000363616 82 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-5-201ENST00000363633 82 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-39-201ENST00000363694 82 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-4-201ENST00000363810 82 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-16-201ENST00000363887 82 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-6-201ENST00000363942 82 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-42-201ENST00000364273 82 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 Y_RNA.273-201ENST00000364703 102 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-15-201ENST00000364809 81 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-1-201ENST00000364961 82 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-26-201ENST00000365067 82 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-10-201ENST00000365073 81 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD58C-201ENST00000365223 64 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 Y_RNA.353-201ENST00000365440 108 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-43-201ENST00000365503 82 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 RNA5SP259-201ENST00000365541 109 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-36-201ENST00000365629 82 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 Y_RNA.454-201ENST00000384224 113 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD28B-201ENST00000390993 75 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 UBE2DNL-203ENST00000474922 222 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORA9.3-201ENST00000516383 129 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 RNU6-113P-201ENST00000516653 101 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 RNU6-958P-201ENST00000516995 106 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 MTND5P34-201ENST00000568888 325 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 SNORD115-40-201ENST00000606510 82 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 AC025166.1-201ENST00000612411 163 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.16□□□□□ -2.06
CCDC140Q96MF4 MIR3914-2-201ENST00000637339 95 ntBASIC2.16□□□□□ -2.06
CCDC140Q96MF4 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC140Q96MF4 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
CCDC140Q96MF4 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC140Q96MF4 SNORA5B-201ENST00000363786 132 ntBASIC2.15□□□□□ -2.07
CCDC140Q96MF4 UBL5P3-201ENST00000475112 231 ntBASIC2.15□□□□□ -2.07
CCDC140Q96MF4 RPS29P24-201ENST00000486345 171 ntBASIC2.15□□□□□ -2.07
CCDC140Q96MF4 AC234781.5-201ENST00000508429 271 ntBASIC2.15□□□□□ -2.07
CCDC140Q96MF4 AC008555.8-201ENST00000623602 2168 ntBASIC2.15□□□□□ -2.07
CCDC140Q96MF4 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.15□□□□□ -2.07
CCDC140Q96MF4 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.14□□□□□ -2.07
CCDC140Q96MF4 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.14□□□□□ -2.07
CCDC140Q96MF4 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
CCDC140Q96MF4 RNU6-349P-201ENST00000362402 107 ntBASIC2.14□□□□□ -2.07
CCDC140Q96MF4 RNU4-16P-201ENST00000364737 141 ntBASIC2.14□□□□□ -2.07
CCDC140Q96MF4 RNU6-1056P-201ENST00000383996 107 ntBASIC2.14□□□□□ -2.07
CCDC140Q96MF4 MIR194-1-201ENST00000384892 85 ntBASIC2.14□□□□□ -2.07
CCDC140Q96MF4 AL590004.2-201ENST00000404787 371 ntBASIC2.14□□□□□ -2.07
CCDC140Q96MF4 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.14□□□□□ -2.07
CCDC140Q96MF4 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.14□□□□□ -2.07
CCDC140Q96MF4 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.14□□□□□ -2.07
CCDC140Q96MF4 JTBP1-201ENST00000441314 247 ntBASIC2.14□□□□□ -2.07
CCDC140Q96MF4 RNU2-11P-201ENST00000459191 187 ntBASIC2.14□□□□□ -2.07
CCDC140Q96MF4 RNU6-917P-201ENST00000516294 104 ntBASIC2.14□□□□□ -2.07
CCDC140Q96MF4 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
CCDC140Q96MF4 RNY1P6-201ENST00000384193 109 ntBASIC2.13□□□□□ -2.07
CCDC140Q96MF4 Y_RNA.563-201ENST00000384707 108 ntBASIC2.13□□□□□ -2.07
CCDC140Q96MF4 MIR513A1-201ENST00000385138 129 ntBASIC2.13□□□□□ -2.07
CCDC140Q96MF4 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
CCDC140Q96MF4 RNU6-1064P-201ENST00000410626 104 ntBASIC2.13□□□□□ -2.07
CCDC140Q96MF4 AL035398.1-201ENST00000430869 322 ntBASIC2.13□□□□□ -2.07
CCDC140Q96MF4 RNU7-96P-201ENST00000459535 64 ntBASIC2.13□□□□□ -2.07
CCDC140Q96MF4 RPL23AP94-201ENST00000512518 302 ntBASIC2.13□□□□□ -2.07
CCDC140Q96MF4 SNORD33.1-201ENST00000516213 88 ntBASIC2.13□□□□□ -2.07
CCDC140Q96MF4 MIR4299-201ENST00000577899 72 ntBASIC2.13□□□□□ -2.07
CCDC140Q96MF4 AC021443.1-201ENST00000604478 211 ntBASIC2.13□□□□□ -2.07
CCDC140Q96MF4 AL121890.5-201ENST00000620848 304 ntBASIC2.13□□□□□ -2.07
CCDC140Q96MF4 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
CCDC140Q96MF4 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.12□□□□□ -2.07
CCDC140Q96MF4 MTND5P18-201ENST00000445624 1801 ntBASIC2.12□□□□□ -2.07
CCDC140Q96MF4 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
CCDC140Q96MF4 RNU6-1325P-201ENST00000364905 105 ntBASIC2.12□□□□□ -2.07
CCDC140Q96MF4 Y_RNA.528-201ENST00000384575 108 ntBASIC2.12□□□□□ -2.07
CCDC140Q96MF4 AL138827.1-201ENST00000402666 306 ntBASIC2.12□□□□□ -2.07
CCDC140Q96MF4 SNORD88.1-201ENST00000408684 91 ntBASIC2.12□□□□□ -2.07
CCDC140Q96MF4 AC087499.2-201ENST00000432861 149 ntBASIC2.12□□□□□ -2.07
CCDC140Q96MF4 RNU7-45P-201ENST00000459460 63 ntBASIC2.12□□□□□ -2.07
CCDC140Q96MF4 RNU6-998P-201ENST00000515894 101 ntBASIC2.12□□□□□ -2.07
CCDC140Q96MF4 AC079600.2-201ENST00000550076 130 ntBASIC2.12□□□□□ -2.07
CCDC140Q96MF4 MIR4446-201ENST00000578505 67 ntBASIC2.12□□□□□ -2.07
CCDC140Q96MF4 U6.95-201ENST00000636931 70 ntBASIC2.12□□□□□ -2.07
CCDC140Q96MF4 AL442644.1-201ENST00000454390 3105 ntBASIC2.12□□□□□ -2.07
CCDC140Q96MF4 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 185.1 ms