Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 MIR1298-201ENST00000408783 112 ntBASIC1.54□□□□□ -2.16
USP38Q8NB14 MTCYBP9-201ENST00000431021 303 ntBASIC1.54□□□□□ -2.16
USP38Q8NB14 AC023449.1-201ENST00000454464 154 ntBASIC1.54□□□□□ -2.16
USP38Q8NB14 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.54□□□□□ -2.16
USP38Q8NB14 AL512310.8-201ENST00000550183 120 ntBASIC1.54□□□□□ -2.16
USP38Q8NB14 AC090049.2-201ENST00000550377 109 ntBASIC1.54□□□□□ -2.16
USP38Q8NB14 MIR4724-201ENST00000579485 89 ntBASIC1.54□□□□□ -2.16
USP38Q8NB14 AC006006.1-201ENST00000603082 144 ntBASIC1.54□□□□□ -2.16
USP38Q8NB14 U2.14-201ENST00000615943 113 ntBASIC1.54□□□□□ -2.16
USP38Q8NB14 Y_RNA.133-201ENST00000363428 110 ntBASIC1.53□□□□□ -2.16
USP38Q8NB14 Y_RNA.288-201ENST00000364854 92 ntBASIC1.53□□□□□ -2.16
USP38Q8NB14 MIR526A1-201ENST00000384897 85 ntBASIC1.53□□□□□ -2.16
USP38Q8NB14 MIR452-201ENST00000385020 85 ntBASIC1.53□□□□□ -2.16
USP38Q8NB14 MIR568-201ENST00000385036 95 ntBASIC1.53□□□□□ -2.16
USP38Q8NB14 Y_RNA.590-201ENST00000410140 107 ntBASIC1.53□□□□□ -2.16
USP38Q8NB14 RNU2-38P-201ENST00000410856 79 ntBASIC1.53□□□□□ -2.16
USP38Q8NB14 RN7SKP88-201ENST00000516847 250 ntBASIC1.53□□□□□ -2.16
USP38Q8NB14 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.53□□□□□ -2.16
USP38Q8NB14 CYP3A52P-201ENST00000563326 91 ntBASIC1.53□□□□□ -2.16
USP38Q8NB14 AL513534.2-201ENST00000603836 250 ntBASIC1.53□□□□□ -2.16
USP38Q8NB14 7SK.8-201ENST00000612110 250 ntBASIC1.53□□□□□ -2.16
USP38Q8NB14 7SK.11-201ENST00000615477 250 ntBASIC1.53□□□□□ -2.16
USP38Q8NB14 MIR7974-201ENST00000615835 79 ntBASIC1.53□□□□□ -2.16
USP38Q8NB14 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.53□□□□□ -2.16
USP38Q8NB14 7SK.13-201ENST00000622040 250 ntBASIC1.53□□□□□ -2.16
USP38Q8NB14 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.53□□□□□ -2.16
USP38Q8NB14 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.53□□□□□ -2.16
USP38Q8NB14 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.52□□□□□ -2.17
USP38Q8NB14 MIR335-201ENST00000362173 94 ntBASIC1.52□□□□□ -2.17
USP38Q8NB14 HMGN2P32-201ENST00000444648 269 ntBASIC1.52□□□□□ -2.17
USP38Q8NB14 AC012433.1-201ENST00000588916 398 ntBASIC1.52□□□□□ -2.17
USP38Q8NB14 Y_RNA.68-201ENST00000362881 102 ntBASIC1.51□□□□□ -2.17
USP38Q8NB14 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
USP38Q8NB14 RNU6-651P-201ENST00000411040 105 ntBASIC1.51□□□□□ -2.17
USP38Q8NB14 RPL30P7-201ENST00000479312 323 ntBASIC1.51□□□□□ -2.17
USP38Q8NB14 NDUFA4P2-201ENST00000489989 244 ntBASIC1.51□□□□□ -2.17
USP38Q8NB14 RNU6-1007P-201ENST00000516586 107 ntBASIC1.51□□□□□ -2.17
USP38Q8NB14 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.51□□□□□ -2.17
USP38Q8NB14 AL160236.1-201ENST00000556317 195 ntBASIC1.51□□□□□ -2.17
USP38Q8NB14 MIR3664-201ENST00000579074 99 ntBASIC1.51□□□□□ -2.17
USP38Q8NB14 AL049861.1-201ENST00000603130 150 ntBASIC1.51□□□□□ -2.17
USP38Q8NB14 GHRLOS.1-201ENST00000610995 70 ntBASIC1.51□□□□□ -2.17
USP38Q8NB14 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
USP38Q8NB14 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
USP38Q8NB14 AC068700.1-201ENST00000565862 3754 ntBASIC1.5□□□□□ -2.17
USP38Q8NB14 Y_RNA.277-201ENST00000364754 102 ntBASIC1.5□□□□□ -2.17
USP38Q8NB14 RNU6-969P-201ENST00000383900 105 ntBASIC1.5□□□□□ -2.17
USP38Q8NB14 RNU6-955P-201ENST00000410497 104 ntBASIC1.5□□□□□ -2.17
USP38Q8NB14 MTND3P2-201ENST00000438452 342 ntBASIC1.5□□□□□ -2.17
USP38Q8NB14 Y_RNA.802-201ENST00000614892 130 ntBASIC1.5□□□□□ -2.17
USP38Q8NB14 Y_RNA.24-201ENST00000362508 103 ntBASIC1.49□□□□□ -2.17
USP38Q8NB14 RNU6-442P-201ENST00000383968 104 ntBASIC1.49□□□□□ -2.17
USP38Q8NB14 MIR150-201ENST00000385048 84 ntBASIC1.49□□□□□ -2.17
USP38Q8NB14 MIR136-201ENST00000385207 82 ntBASIC1.49□□□□□ -2.17
USP38Q8NB14 MIR653-201ENST00000385279 96 ntBASIC1.49□□□□□ -2.17
USP38Q8NB14 SNORD72-201ENST00000390994 80 ntBASIC1.49□□□□□ -2.17
USP38Q8NB14 AL603910.2-201ENST00000407268 136 ntBASIC1.49□□□□□ -2.17
USP38Q8NB14 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.49□□□□□ -2.17
USP38Q8NB14 AC015922.2-201ENST00000435593 184 ntBASIC1.49□□□□□ -2.17
USP38Q8NB14 SNORD11-201ENST00000459124 84 ntBASIC1.49□□□□□ -2.17
USP38Q8NB14 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.49□□□□□ -2.17
USP38Q8NB14 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.49□□□□□ -2.17
USP38Q8NB14 Y_RNA.336-201ENST00000365307 109 ntBASIC1.48□□□□□ -2.17
USP38Q8NB14 Y_RNA.477-201ENST00000384352 108 ntBASIC1.48□□□□□ -2.17
USP38Q8NB14 MIR216A-201ENST00000385063 110 ntBASIC1.48□□□□□ -2.17
USP38Q8NB14 SNORD41-201ENST00000386967 70 ntBASIC1.48□□□□□ -2.17
USP38Q8NB14 SNORD127-201ENST00000458892 86 ntBASIC1.48□□□□□ -2.17
USP38Q8NB14 AC090142.3-201ENST00000519012 385 ntBASIC1.48□□□□□ -2.17
USP38Q8NB14 AC087685.1-201ENST00000587507 141 ntBASIC1.48□□□□□ -2.17
USP38Q8NB14 MIR8065-201ENST00000620577 100 ntBASIC1.48□□□□□ -2.17
USP38Q8NB14 RNU6-196P-201ENST00000384315 107 ntBASIC1.47□□□□□ -2.17
USP38Q8NB14 SNORD38C-201ENST00000384381 69 ntBASIC1.47□□□□□ -2.17
USP38Q8NB14 Y_RNA.556-201ENST00000384677 113 ntBASIC1.47□□□□□ -2.17
USP38Q8NB14 SNORA8.3-201ENST00000384679 139 ntBASIC1.47□□□□□ -2.17
USP38Q8NB14 Y_RNA.572-201ENST00000384757 98 ntBASIC1.47□□□□□ -2.17
USP38Q8NB14 RNU6-1132P-201ENST00000459214 107 ntBASIC1.47□□□□□ -2.17
USP38Q8NB14 AC004223.1-201ENST00000479840 271 ntBASIC1.47□□□□□ -2.17
USP38Q8NB14 SNORA18.7-201ENST00000516910 131 ntBASIC1.47□□□□□ -2.17
USP38Q8NB14 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.47□□□□□ -2.17
USP38Q8NB14 MIR3660-201ENST00000584845 100 ntBASIC1.47□□□□□ -2.17
USP38Q8NB14 AC008507.4-201ENST00000585464 127 ntBASIC1.47□□□□□ -2.17
USP38Q8NB14 SNORD27-201ENST00000363981 72 ntBASIC1.46□□□□□ -2.18
USP38Q8NB14 Y_RNA.251-201ENST00000364551 99 ntBASIC1.46□□□□□ -2.18
USP38Q8NB14 Y_RNA.352-201ENST00000365439 102 ntBASIC1.46□□□□□ -2.18
USP38Q8NB14 RNU6-574P-201ENST00000384265 107 ntBASIC1.46□□□□□ -2.18
USP38Q8NB14 Y_RNA.587-201ENST00000391210 103 ntBASIC1.46□□□□□ -2.18
USP38Q8NB14 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.46□□□□□ -2.18
USP38Q8NB14 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.46□□□□□ -2.18
USP38Q8NB14 RPL39P39-201ENST00000455840 151 ntBASIC1.46□□□□□ -2.18
USP38Q8NB14 AL357312.1-201ENST00000603879 298 ntBASIC1.46□□□□□ -2.18
USP38Q8NB14 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
USP38Q8NB14 SNORD26-201ENST00000384147 75 ntBASIC1.45□□□□□ -2.18
USP38Q8NB14 MIR758-201ENST00000390227 88 ntBASIC1.45□□□□□ -2.18
USP38Q8NB14 SNORA40.6-201ENST00000391153 128 ntBASIC1.45□□□□□ -2.18
USP38Q8NB14 RNA5SP496-201ENST00000391240 109 ntBASIC1.45□□□□□ -2.18
USP38Q8NB14 MIR548H3-201ENST00000408771 118 ntBASIC1.45□□□□□ -2.18
USP38Q8NB14 RNA5SP476-201ENST00000516613 103 ntBASIC1.45□□□□□ -2.18
USP38Q8NB14 AC068338.1-201ENST00000565567 176 ntBASIC1.45□□□□□ -2.18
USP38Q8NB14 MIR5000-201ENST00000577717 103 ntBASIC1.45□□□□□ -2.18
USP38Q8NB14 uc_338.4-201ENST00000616635 176 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms