Protein–RNA interactions for Protein: Q66K89

E4F1, Transcription factor E4F1, humanhuman

Predicted RBP Predictions only

Length 784 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
E4F1Q66K89 RNA5SP281-201ENST00000516504 135 ntBASIC2.37□□□□□ -2.03
E4F1Q66K89 RNA5SP168-201ENST00000516642 112 ntBASIC2.37□□□□□ -2.03
E4F1Q66K89 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
E4F1Q66K89 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
E4F1Q66K89 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.37□□□□□ -2.03
E4F1Q66K89 RNU6-1189P-201ENST00000383958 107 ntBASIC2.36□□□□□ -2.03
E4F1Q66K89 RNU6-1031P-201ENST00000384773 107 ntBASIC2.36□□□□□ -2.03
E4F1Q66K89 RNA5SP450-201ENST00000411206 102 ntBASIC2.36□□□□□ -2.03
E4F1Q66K89 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.36□□□□□ -2.03
E4F1Q66K89 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.36□□□□□ -2.03
E4F1Q66K89 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.36□□□□□ -2.03
E4F1Q66K89 SNORA31.25-201ENST00000517242 134 ntBASIC2.36□□□□□ -2.03
E4F1Q66K89 MIR4709-201ENST00000577272 72 ntBASIC2.36□□□□□ -2.03
E4F1Q66K89 MIR4529-201ENST00000578110 78 ntBASIC2.36□□□□□ -2.03
E4F1Q66K89 U1.36-201ENST00000620684 176 ntBASIC2.36□□□□□ -2.03
E4F1Q66K89 MIR376A2-201ENST00000636782 80 ntBASIC2.36□□□□□ -2.03
E4F1Q66K89 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.36□□□□□ -2.03
E4F1Q66K89 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.36□□□□□ -2.03
E4F1Q66K89 Y_RNA.37-201ENST00000362606 108 ntBASIC2.35□□□□□ -2.03
E4F1Q66K89 Y_RNA.273-201ENST00000364703 102 ntBASIC2.35□□□□□ -2.03
E4F1Q66K89 SNORA2.2-201ENST00000365473 135 ntBASIC2.35□□□□□ -2.03
E4F1Q66K89 Y_RNA.410-201ENST00000383992 113 ntBASIC2.35□□□□□ -2.03
E4F1Q66K89 RNU6-424P-201ENST00000384367 105 ntBASIC2.35□□□□□ -2.03
E4F1Q66K89 MTATP6P29-201ENST00000415057 132 ntBASIC2.35□□□□□ -2.03
E4F1Q66K89 HMGN2P38-201ENST00000423806 265 ntBASIC2.35□□□□□ -2.03
E4F1Q66K89 AC025033.1-201ENST00000463883 194 ntBASIC2.35□□□□□ -2.03
E4F1Q66K89 SNORD53-201ENST00000579969 78 ntBASIC2.35□□□□□ -2.03
E4F1Q66K89 MIR5197-201ENST00000583721 112 ntBASIC2.35□□□□□ -2.03
E4F1Q66K89 AC027279.3-201ENST00000625055 122 ntBASIC2.35□□□□□ -2.03
E4F1Q66K89 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
E4F1Q66K89 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
E4F1Q66K89 RNU6-647P-201ENST00000364243 107 ntBASIC2.34□□□□□ -2.03
E4F1Q66K89 RNU6-296P-201ENST00000384608 107 ntBASIC2.34□□□□□ -2.03
E4F1Q66K89 snoU13.27-201ENST00000459278 104 ntBASIC2.34□□□□□ -2.03
E4F1Q66K89 SCARNA16.3-201ENST00000516595 184 ntBASIC2.34□□□□□ -2.03
E4F1Q66K89 SNORD36C-201ENST00000516733 66 ntBASIC2.34□□□□□ -2.03
E4F1Q66K89 MIR6895-201ENST00000613497 78 ntBASIC2.34□□□□□ -2.03
E4F1Q66K89 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.34□□□□□ -2.03
E4F1Q66K89 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
E4F1Q66K89 Y_RNA.280-201ENST00000364765 112 ntBASIC2.33□□□□□ -2.04
E4F1Q66K89 Y_RNA.353-201ENST00000365440 108 ntBASIC2.33□□□□□ -2.04
E4F1Q66K89 SNORD20-201ENST00000384550 80 ntBASIC2.33□□□□□ -2.04
E4F1Q66K89 NDUFB4P4-201ENST00000404822 243 ntBASIC2.33□□□□□ -2.04
E4F1Q66K89 Y_RNA.651-201ENST00000459380 103 ntBASIC2.33□□□□□ -2.04
E4F1Q66K89 RNA5SP236-201ENST00000516169 116 ntBASIC2.33□□□□□ -2.04
E4F1Q66K89 RNA5SP24-201ENST00000516478 95 ntBASIC2.33□□□□□ -2.04
E4F1Q66K89 MIR3162-201ENST00000581818 82 ntBASIC2.33□□□□□ -2.04
E4F1Q66K89 MIR4448-201ENST00000584360 86 ntBASIC2.33□□□□□ -2.04
E4F1Q66K89 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC2.33□□□□□ -2.04
E4F1Q66K89 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
E4F1Q66K89 RNU4-52P-201ENST00000384209 138 ntBASIC2.32□□□□□ -2.04
E4F1Q66K89 MIR23A-201ENST00000385245 73 ntBASIC2.32□□□□□ -2.04
E4F1Q66K89 AC015922.2-201ENST00000435593 184 ntBASIC2.32□□□□□ -2.04
E4F1Q66K89 AC093850.1-201ENST00000454121 251 ntBASIC2.32□□□□□ -2.04
E4F1Q66K89 RNA5SP57-201ENST00000459463 123 ntBASIC2.32□□□□□ -2.04
E4F1Q66K89 RNA5SP481-201ENST00000516814 122 ntBASIC2.32□□□□□ -2.04
E4F1Q66K89 SCARNA15-202ENST00000516881 127 ntBASIC2.32□□□□□ -2.04
E4F1Q66K89 SNORA18.7-201ENST00000516910 131 ntBASIC2.32□□□□□ -2.04
E4F1Q66K89 RNU7-70P-201ENST00000516941 66 ntBASIC2.32□□□□□ -2.04
E4F1Q66K89 Y_RNA.712-201ENST00000517011 92 ntBASIC2.32□□□□□ -2.04
E4F1Q66K89 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.32□□□□□ -2.04
E4F1Q66K89 AP003484.1-201ENST00000530974 250 ntBASIC2.32□□□□□ -2.04
E4F1Q66K89 AC021506.2-201ENST00000612354 169 ntBASIC2.32□□□□□ -2.04
E4F1Q66K89 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
E4F1Q66K89 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
E4F1Q66K89 RNU6-833P-201ENST00000363486 107 ntBASIC2.31□□□□□ -2.04
E4F1Q66K89 MIR524-201ENST00000385242 87 ntBASIC2.31□□□□□ -2.04
E4F1Q66K89 SNORA40.5-201ENST00000391061 128 ntBASIC2.31□□□□□ -2.04
E4F1Q66K89 SNORA48.3-201ENST00000391081 134 ntBASIC2.31□□□□□ -2.04
E4F1Q66K89 RNU1-40P-201ENST00000516816 164 ntBASIC2.31□□□□□ -2.04
E4F1Q66K89 RNU1-97P-201ENST00000516872 164 ntBASIC2.31□□□□□ -2.04
E4F1Q66K89 MTND5P34-201ENST00000568888 325 ntBASIC2.31□□□□□ -2.04
E4F1Q66K89 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
E4F1Q66K89 AL391516.1-201ENST00000554380 2449 ntBASIC2.3□□□□□ -2.04
E4F1Q66K89 RNU6-1056P-201ENST00000383996 107 ntBASIC2.3□□□□□ -2.04
E4F1Q66K89 MIR516B2-201ENST00000385190 85 ntBASIC2.3□□□□□ -2.04
E4F1Q66K89 RNA5SP100-201ENST00000410903 110 ntBASIC2.3□□□□□ -2.04
E4F1Q66K89 RNA5SP59-201ENST00000410922 110 ntBASIC2.3□□□□□ -2.04
E4F1Q66K89 Y_RNA.630-201ENST00000411370 108 ntBASIC2.3□□□□□ -2.04
E4F1Q66K89 RNU6-781P-201ENST00000516377 101 ntBASIC2.3□□□□□ -2.04
E4F1Q66K89 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.3□□□□□ -2.04
E4F1Q66K89 MIR4778-201ENST00000577635 80 ntBASIC2.3□□□□□ -2.04
E4F1Q66K89 MIR5694-201ENST00000581190 76 ntBASIC2.3□□□□□ -2.04
E4F1Q66K89 AC108081.1-201ENST00000604358 221 ntBASIC2.3□□□□□ -2.04
E4F1Q66K89 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.3□□□□□ -2.04
E4F1Q66K89 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.3□□□□□ -2.04
E4F1Q66K89 MIR3914-2-201ENST00000637339 95 ntBASIC2.3□□□□□ -2.04
E4F1Q66K89 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
E4F1Q66K89 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
E4F1Q66K89 MIR342-201ENST00000362212 99 ntBASIC2.29□□□□□ -2.04
E4F1Q66K89 RNU6-1325P-201ENST00000364905 105 ntBASIC2.29□□□□□ -2.04
E4F1Q66K89 SNORD58C-201ENST00000365223 64 ntBASIC2.29□□□□□ -2.04
E4F1Q66K89 RNU6-938P-201ENST00000411285 103 ntBASIC2.29□□□□□ -2.04
E4F1Q66K89 AC087499.4-201ENST00000448505 178 ntBASIC2.29□□□□□ -2.04
E4F1Q66K89 AC011753.1-201ENST00000451001 220 ntBASIC2.29□□□□□ -2.04
E4F1Q66K89 RN7SKP19-201ENST00000516016 252 ntBASIC2.29□□□□□ -2.04
E4F1Q66K89 RNA5SP200-201ENST00000516360 103 ntBASIC2.29□□□□□ -2.04
E4F1Q66K89 SNORA31.17-201ENST00000516953 127 ntBASIC2.29□□□□□ -2.04
E4F1Q66K89 MIR4672-201ENST00000583126 81 ntBASIC2.29□□□□□ -2.04
E4F1Q66K89 MIR3935-201ENST00000583472 104 ntBASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 200.7 ms