Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RNU6-296P-201ENST00000384608 107 ntBASIC2.02□□□□□ -2.09
VPS53Q5VIR6 RN7SKP200-201ENST00000410564 320 ntBASIC2.02□□□□□ -2.09
VPS53Q5VIR6 RNU2-7P-201ENST00000410794 178 ntBASIC2.02□□□□□ -2.09
VPS53Q5VIR6 SNORA31.10-201ENST00000516482 106 ntBASIC2.02□□□□□ -2.09
VPS53Q5VIR6 Pinc.1-201ENST00000616452 154 ntBASIC2.02□□□□□ -2.09
VPS53Q5VIR6 Y_RNA.778-201ENST00000620203 90 ntBASIC2.02□□□□□ -2.09
VPS53Q5VIR6 Y_RNA.400-201ENST00000383963 111 ntBASIC2.01□□□□□ -2.09
VPS53Q5VIR6 MIR30A-201ENST00000385092 71 ntBASIC2.01□□□□□ -2.09
VPS53Q5VIR6 SNORA12.1-201ENST00000390873 148 ntBASIC2.01□□□□□ -2.09
VPS53Q5VIR6 snoU13.23-201ENST00000458863 104 ntBASIC2.01□□□□□ -2.09
VPS53Q5VIR6 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC2.01□□□□□ -2.09
VPS53Q5VIR6 MIR3646-201ENST00000578301 84 ntBASIC2.01□□□□□ -2.09
VPS53Q5VIR6 MIR378D2-201ENST00000580636 98 ntBASIC2.01□□□□□ -2.09
VPS53Q5VIR6 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.01□□□□□ -2.09
VPS53Q5VIR6 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2□□□□□ -2.09
VPS53Q5VIR6 SNORD68-201ENST00000363214 84 ntBASIC2□□□□□ -2.09
VPS53Q5VIR6 Y_RNA.634-201ENST00000364811 113 ntBASIC2□□□□□ -2.09
VPS53Q5VIR6 SNORD50.2-201ENST00000365465 70 ntBASIC2□□□□□ -2.09
VPS53Q5VIR6 Y_RNA.393-201ENST00000383936 102 ntBASIC2□□□□□ -2.09
VPS53Q5VIR6 RNU2-70P-201ENST00000410718 179 ntBASIC2□□□□□ -2.09
VPS53Q5VIR6 RNU4-61P-201ENST00000411243 107 ntBASIC2□□□□□ -2.09
VPS53Q5VIR6 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2□□□□□ -2.09
VPS53Q5VIR6 STAG3L5P-204ENST00000443759 179 ntBASIC2□□□□□ -2.09
VPS53Q5VIR6 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2□□□□□ -2.09
VPS53Q5VIR6 AC008834.1-201ENST00000511612 175 ntBASIC2□□□□□ -2.09
VPS53Q5VIR6 RNA5SP481-201ENST00000516814 122 ntBASIC2□□□□□ -2.09
VPS53Q5VIR6 AC015712.3-201ENST00000559380 164 ntBASIC2□□□□□ -2.09
VPS53Q5VIR6 MIR3122-201ENST00000577243 73 ntBASIC2□□□□□ -2.09
VPS53Q5VIR6 MIR3683-201ENST00000580847 82 ntBASIC2□□□□□ -2.09
VPS53Q5VIR6 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2□□□□□ -2.09
VPS53Q5VIR6 RNA5SP99-201ENST00000364020 114 ntBASIC1.99□□□□□ -2.09
VPS53Q5VIR6 RNU6-597P-201ENST00000365620 102 ntBASIC1.99□□□□□ -2.09
VPS53Q5VIR6 AL034345.1-201ENST00000407768 123 ntBASIC1.99□□□□□ -2.09
VPS53Q5VIR6 MLLT10P1-201ENST00000418346 262 ntBASIC1.99□□□□□ -2.09
VPS53Q5VIR6 HSPE1P9-201ENST00000440046 311 ntBASIC1.99□□□□□ -2.09
VPS53Q5VIR6 SNORD13-201ENST00000459299 104 ntBASIC1.99□□□□□ -2.09
VPS53Q5VIR6 RNA5SP437-201ENST00000517249 129 ntBASIC1.99□□□□□ -2.09
VPS53Q5VIR6 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.99□□□□□ -2.09
VPS53Q5VIR6 MIR4255-201ENST00000579351 72 ntBASIC1.99□□□□□ -2.09
VPS53Q5VIR6 MIR8074-201ENST00000615081 81 ntBASIC1.99□□□□□ -2.09
VPS53Q5VIR6 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.99□□□□□ -2.09
VPS53Q5VIR6 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.99□□□□□ -2.09
VPS53Q5VIR6 Y_RNA.91-201ENST00000363042 107 ntBASIC1.98□□□□□ -2.09
VPS53Q5VIR6 RNU6-414P-201ENST00000363705 104 ntBASIC1.98□□□□□ -2.09
VPS53Q5VIR6 RNU6-151P-201ENST00000364158 107 ntBASIC1.98□□□□□ -2.09
VPS53Q5VIR6 RNU6-978P-201ENST00000364371 103 ntBASIC1.98□□□□□ -2.09
VPS53Q5VIR6 RNA5SP190-201ENST00000365222 118 ntBASIC1.98□□□□□ -2.09
VPS53Q5VIR6 RNU6-187P-201ENST00000384139 106 ntBASIC1.98□□□□□ -2.09
VPS53Q5VIR6 Y_RNA.486-201ENST00000384398 107 ntBASIC1.98□□□□□ -2.09
VPS53Q5VIR6 Y_RNA.521-201ENST00000384560 114 ntBASIC1.98□□□□□ -2.09
VPS53Q5VIR6 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
VPS53Q5VIR6 SNORD72-201ENST00000390994 80 ntBASIC1.98□□□□□ -2.09
VPS53Q5VIR6 SNORD116-25-201ENST00000516517 92 ntBASIC1.98□□□□□ -2.09
VPS53Q5VIR6 RNU6-365P-201ENST00000517113 106 ntBASIC1.98□□□□□ -2.09
VPS53Q5VIR6 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.98□□□□□ -2.09
VPS53Q5VIR6 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.97□□□□□ -2.09
VPS53Q5VIR6 RNU1-17P-201ENST00000363022 152 ntBASIC1.97□□□□□ -2.09
VPS53Q5VIR6 Y_RNA.215-201ENST00000364204 112 ntBASIC1.97□□□□□ -2.09
VPS53Q5VIR6 SNORD50B-201ENST00000364995 70 ntBASIC1.97□□□□□ -2.09
VPS53Q5VIR6 snoU2-30.1-201ENST00000365012 70 ntBASIC1.97□□□□□ -2.09
VPS53Q5VIR6 RNU6-768P-201ENST00000384683 107 ntBASIC1.97□□□□□ -2.09
VPS53Q5VIR6 MIR613-201ENST00000385248 95 ntBASIC1.97□□□□□ -2.09
VPS53Q5VIR6 RNU6-360P-201ENST00000390944 104 ntBASIC1.97□□□□□ -2.09
VPS53Q5VIR6 RPL30P13-201ENST00000418873 348 ntBASIC1.97□□□□□ -2.09
VPS53Q5VIR6 RNU6-346P-201ENST00000516288 111 ntBASIC1.97□□□□□ -2.09
VPS53Q5VIR6 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.97□□□□□ -2.09
VPS53Q5VIR6 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.97□□□□□ -2.09
VPS53Q5VIR6 MIR502-201ENST00000606349 86 ntBASIC1.97□□□□□ -2.09
VPS53Q5VIR6 AL353997.5-201ENST00000618886 171 ntBASIC1.97□□□□□ -2.09
VPS53Q5VIR6 AC027279.3-201ENST00000625055 122 ntBASIC1.97□□□□□ -2.09
VPS53Q5VIR6 WWP1P1-201ENST00000466609 2769 ntBASIC1.97□□□□□ -2.09
VPS53Q5VIR6 Y_RNA.66-201ENST00000362862 102 ntBASIC1.96□□□□□ -2.1
VPS53Q5VIR6 Y_RNA.336-201ENST00000365307 109 ntBASIC1.96□□□□□ -2.1
VPS53Q5VIR6 SNORA4.2-201ENST00000365313 147 ntBASIC1.96□□□□□ -2.1
VPS53Q5VIR6 SNORD24-201ENST00000383884 75 ntBASIC1.96□□□□□ -2.1
VPS53Q5VIR6 Y_RNA.488-201ENST00000384403 102 ntBASIC1.96□□□□□ -2.1
VPS53Q5VIR6 RNU6-1031P-201ENST00000384773 107 ntBASIC1.96□□□□□ -2.1
VPS53Q5VIR6 SNORA17.3-201ENST00000391159 129 ntBASIC1.96□□□□□ -2.1
VPS53Q5VIR6 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.96□□□□□ -2.1
VPS53Q5VIR6 RPL31P63-201ENST00000422565 375 ntBASIC1.96□□□□□ -2.1
VPS53Q5VIR6 HMGN2P32-201ENST00000444648 269 ntBASIC1.96□□□□□ -2.1
VPS53Q5VIR6 RNU6-504P-201ENST00000516568 104 ntBASIC1.96□□□□□ -2.1
VPS53Q5VIR6 RNU6-789P-201ENST00000517105 102 ntBASIC1.96□□□□□ -2.1
VPS53Q5VIR6 MIR3658-201ENST00000636291 56 ntBASIC1.96□□□□□ -2.1
VPS53Q5VIR6 MIRLET7C-201ENST00000362160 84 ntBASIC1.95□□□□□ -2.1
VPS53Q5VIR6 SNORD14E-201ENST00000364009 85 ntBASIC1.95□□□□□ -2.1
VPS53Q5VIR6 RNU4-11P-201ENST00000365287 132 ntBASIC1.95□□□□□ -2.1
VPS53Q5VIR6 Y_RNA.343-201ENST00000365354 112 ntBASIC1.95□□□□□ -2.1
VPS53Q5VIR6 RNU6-442P-201ENST00000383968 104 ntBASIC1.95□□□□□ -2.1
VPS53Q5VIR6 SNORA75.5-201ENST00000391291 81 ntBASIC1.95□□□□□ -2.1
VPS53Q5VIR6 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.95□□□□□ -2.1
VPS53Q5VIR6 MIR934-201ENST00000401241 83 ntBASIC1.95□□□□□ -2.1
VPS53Q5VIR6 snoU13.27-201ENST00000459278 104 ntBASIC1.95□□□□□ -2.1
VPS53Q5VIR6 CYCTP-201ENST00000504253 315 ntBASIC1.95□□□□□ -2.1
VPS53Q5VIR6 SNORD45.4-201ENST00000516629 73 ntBASIC1.95□□□□□ -2.1
VPS53Q5VIR6 MIR4709-201ENST00000577272 72 ntBASIC1.95□□□□□ -2.1
VPS53Q5VIR6 AC120024.3-201ENST00000603167 156 ntBASIC1.95□□□□□ -2.1
VPS53Q5VIR6 AC006441.5-201ENST00000612680 209 ntBASIC1.95□□□□□ -2.1
VPS53Q5VIR6 MIR6844-201ENST00000637122 62 ntBASIC1.95□□□□□ -2.1
VPS53Q5VIR6 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms