Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SNORA69.1-201ENST00000390904 137 ntBASIC-0.37□□□□□ -2.47
CCDC88AQ3V6T2 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC-0.37□□□□□ -2.47
CCDC88AQ3V6T2 AC069271.1-201ENST00000445577 156 ntBASIC-0.37□□□□□ -2.47
CCDC88AQ3V6T2 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC-0.37□□□□□ -2.47
CCDC88AQ3V6T2 RNU6-180P-201ENST00000516697 61 ntBASIC-0.37□□□□□ -2.47
CCDC88AQ3V6T2 MTND5P34-201ENST00000568888 325 ntBASIC-0.37□□□□□ -2.47
CCDC88AQ3V6T2 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC-0.37□□□□□ -2.47
CCDC88AQ3V6T2 AC091304.10-201ENST00000641554 121 ntBASIC-0.37□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-34-201ENST00000362441 82 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-12-201ENST00000362583 82 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-29-201ENST00000362834 82 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-9-201ENST00000362912 82 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-21-201ENST00000362963 81 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-14-201ENST00000363090 81 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-13-201ENST00000363358 82 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-41-201ENST00000363608 82 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-11-201ENST00000363616 82 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-5-201ENST00000363633 82 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-39-201ENST00000363694 82 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-4-201ENST00000363810 82 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-16-201ENST00000363887 82 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-6-201ENST00000363942 82 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-42-201ENST00000364273 82 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-15-201ENST00000364809 81 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-1-201ENST00000364961 82 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-26-201ENST00000365067 82 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-10-201ENST00000365073 81 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 Y_RNA.341-201ENST00000365341 102 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-43-201ENST00000365503 82 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-36-201ENST00000365629 82 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 Y_RNA.402-201ENST00000383972 102 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORA75-201ENST00000384158 137 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 Y_RNA.494-201ENST00000384432 111 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 MIR635-201ENST00000384830 98 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 MIR106A-201ENST00000384870 81 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 AC091959.1-201ENST00000495857 238 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 RNU6-864P-201ENST00000516256 108 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 AC125232.2-201ENST00000592457 143 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 SNORD115-40-201ENST00000606510 82 ntBASIC-0.38□□□□□ -2.47
CCDC88AQ3V6T2 RNU6-726P-201ENST00000364680 107 ntBASIC-0.39□□□□□ -2.47
CCDC88AQ3V6T2 SNORD49B-201ENST00000365172 72 ntBASIC-0.39□□□□□ -2.47
CCDC88AQ3V6T2 Y_RNA.446-201ENST00000384178 104 ntBASIC-0.39□□□□□ -2.47
CCDC88AQ3V6T2 MIR548O-201ENST00000408583 114 ntBASIC-0.39□□□□□ -2.47
CCDC88AQ3V6T2 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC-0.39□□□□□ -2.47
CCDC88AQ3V6T2 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC-0.39□□□□□ -2.47
CCDC88AQ3V6T2 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC-0.39□□□□□ -2.47
CCDC88AQ3V6T2 SNORD11-201ENST00000459124 84 ntBASIC-0.39□□□□□ -2.47
CCDC88AQ3V6T2 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC-0.39□□□□□ -2.47
CCDC88AQ3V6T2 AC011352.1-201ENST00000512300 793 ntBASIC-0.39□□□□□ -2.47
CCDC88AQ3V6T2 AC008507.4-201ENST00000585464 127 ntBASIC-0.39□□□□□ -2.47
CCDC88AQ3V6T2 AC073869.9-201ENST00000641610 120 ntBASIC-0.39□□□□□ -2.47
CCDC88AQ3V6T2 RNU6-801P-201ENST00000364087 105 ntBASIC-0.39□□□□□ -2.47
CCDC88AQ3V6T2 RNU6-652P-201ENST00000365488 107 ntBASIC-0.39□□□□□ -2.47
CCDC88AQ3V6T2 Y_RNA.495-201ENST00000384435 112 ntBASIC-0.39□□□□□ -2.47
CCDC88AQ3V6T2 MIR1257-201ENST00000408490 117 ntBASIC-0.39□□□□□ -2.47
CCDC88AQ3V6T2 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC-0.39□□□□□ -2.47
CCDC88AQ3V6T2 Y_RNA.695-201ENST00000516715 107 ntBASIC-0.39□□□□□ -2.47
CCDC88AQ3V6T2 RNU6-958P-201ENST00000516995 106 ntBASIC-0.39□□□□□ -2.47
CCDC88AQ3V6T2 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC-0.39□□□□□ -2.47
CCDC88AQ3V6T2 AC006600.1-201ENST00000572529 153 ntBASIC-0.39□□□□□ -2.47
CCDC88AQ3V6T2 MTND5P26-201ENST00000426018 1752 ntBASIC-0.4□□□□□ -2.47
CCDC88AQ3V6T2 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC-0.4□□□□□ -2.47
CCDC88AQ3V6T2 Y_RNA.38-201ENST00000362617 102 ntBASIC-0.4□□□□□ -2.47
CCDC88AQ3V6T2 RNA5SP275-201ENST00000363936 118 ntBASIC-0.4□□□□□ -2.47
CCDC88AQ3V6T2 SNORD14E-201ENST00000364009 85 ntBASIC-0.4□□□□□ -2.47
CCDC88AQ3V6T2 RNA5SP128-201ENST00000365305 116 ntBASIC-0.4□□□□□ -2.47
CCDC88AQ3V6T2 RNU6-1013P-201ENST00000384180 107 ntBASIC-0.4□□□□□ -2.47
CCDC88AQ3V6T2 SNORA75.4-201ENST00000391278 119 ntBASIC-0.4□□□□□ -2.47
CCDC88AQ3V6T2 BTF3P11-201ENST00000426582 477 ntBASIC-0.4□□□□□ -2.47
CCDC88AQ3V6T2 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC-0.4□□□□□ -2.47
CCDC88AQ3V6T2 AC091951.2-201ENST00000500762 203 ntBASIC-0.4□□□□□ -2.47
CCDC88AQ3V6T2 RNU6-1012P-201ENST00000516606 109 ntBASIC-0.4□□□□□ -2.47
CCDC88AQ3V6T2 Y_RNA.700-201ENST00000516806 100 ntBASIC-0.4□□□□□ -2.47
CCDC88AQ3V6T2 IGKV1-22-201ENST00000524313 326 ntBASIC-0.4□□□□□ -2.47
CCDC88AQ3V6T2 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC-0.4□□□□□ -2.47
CCDC88AQ3V6T2 Y_RNA.101-201ENST00000363154 102 ntBASIC-0.41□□□□□ -2.47
CCDC88AQ3V6T2 Y_RNA.301-201ENST00000364990 103 ntBASIC-0.41□□□□□ -2.47
CCDC88AQ3V6T2 SNORA51.10-201ENST00000384418 136 ntBASIC-0.41□□□□□ -2.47
CCDC88AQ3V6T2 SNORD28-201ENST00000384706 75 ntBASIC-0.41□□□□□ -2.47
CCDC88AQ3V6T2 RNU6-535P-201ENST00000384722 107 ntBASIC-0.41□□□□□ -2.47
CCDC88AQ3V6T2 Y_RNA.572-201ENST00000384757 98 ntBASIC-0.41□□□□□ -2.47
CCDC88AQ3V6T2 Y_RNA.582-201ENST00000391023 95 ntBASIC-0.41□□□□□ -2.47
CCDC88AQ3V6T2 MIR190B-201ENST00000401119 79 ntBASIC-0.41□□□□□ -2.47
CCDC88AQ3V6T2 SNORD75.1-201ENST00000408373 60 ntBASIC-0.41□□□□□ -2.47
CCDC88AQ3V6T2 RNU2-11P-201ENST00000459191 187 ntBASIC-0.41□□□□□ -2.47
CCDC88AQ3V6T2 SNORA18.4-201ENST00000516440 124 ntBASIC-0.41□□□□□ -2.47
CCDC88AQ3V6T2 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC-0.41□□□□□ -2.47
CCDC88AQ3V6T2 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC-0.41□□□□□ -2.47
CCDC88AQ3V6T2 AC244669.1-204ENST00000621564 178 ntBASIC-0.41□□□□□ -2.47
CCDC88AQ3V6T2 AC098679.4-201ENST00000624241 654 ntBASIC-0.41□□□□□ -2.47
CCDC88AQ3V6T2 MIR1321-201ENST00000637766 79 ntBASIC-0.41□□□□□ -2.47
CCDC88AQ3V6T2 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.41□□□□□ -2.48
CCDC88AQ3V6T2 Y_RNA.106-201ENST00000363189 100 ntBASIC-0.41□□□□□ -2.48
CCDC88AQ3V6T2 RNU4-75P-201ENST00000364621 146 ntBASIC-0.41□□□□□ -2.48
CCDC88AQ3V6T2 RNU6-1042P-201ENST00000384204 107 ntBASIC-0.41□□□□□ -2.48
CCDC88AQ3V6T2 MTND4P19-201ENST00000446659 478 ntBASIC-0.41□□□□□ -2.48
CCDC88AQ3V6T2 RPL39P25-201ENST00000449384 154 ntBASIC-0.41□□□□□ -2.48
CCDC88AQ3V6T2 RPL39P34-201ENST00000477141 156 ntBASIC-0.41□□□□□ -2.48
CCDC88AQ3V6T2 RNU1-54P-201ENST00000517181 120 ntBASIC-0.41□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 250 ms