Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
HOXA4Q00056 RNA5SP276-201ENST00000362580 94 ntBASIC1.84□□□□□ -2.11
HOXA4Q00056 Y_RNA.242-201ENST00000364473 110 ntBASIC1.84□□□□□ -2.11
HOXA4Q00056 Y_RNA.336-201ENST00000365307 109 ntBASIC1.84□□□□□ -2.11
HOXA4Q00056 Y_RNA.353-201ENST00000365440 108 ntBASIC1.84□□□□□ -2.11
HOXA4Q00056 RNU6-424P-201ENST00000384367 105 ntBASIC1.84□□□□□ -2.11
HOXA4Q00056 MIR624-201ENST00000385217 97 ntBASIC1.84□□□□□ -2.11
HOXA4Q00056 MIR524-201ENST00000385242 87 ntBASIC1.84□□□□□ -2.11
HOXA4Q00056 SNORD23.1-201ENST00000408212 104 ntBASIC1.84□□□□□ -2.11
HOXA4Q00056 RNA5SP127-201ENST00000411051 133 ntBASIC1.84□□□□□ -2.11
HOXA4Q00056 Y_RNA.630-201ENST00000411370 108 ntBASIC1.84□□□□□ -2.11
HOXA4Q00056 AC008267.6-201ENST00000441664 139 ntBASIC1.84□□□□□ -2.11
HOXA4Q00056 MIR4435-1-201ENST00000582552 80 ntBASIC1.84□□□□□ -2.11
HOXA4Q00056 SNRPGP19-201ENST00000603826 189 ntBASIC1.84□□□□□ -2.11
HOXA4Q00056 MIR376A2-201ENST00000636782 80 ntBASIC1.84□□□□□ -2.11
HOXA4Q00056 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
HOXA4Q00056 Y_RNA.52-201ENST00000362760 96 ntBASIC1.83□□□□□ -2.12
HOXA4Q00056 RNU6-309P-201ENST00000364573 106 ntBASIC1.83□□□□□ -2.12
HOXA4Q00056 RNU6-1292P-201ENST00000383856 107 ntBASIC1.83□□□□□ -2.12
HOXA4Q00056 RNU6-301P-201ENST00000384277 107 ntBASIC1.83□□□□□ -2.12
HOXA4Q00056 RNU6-950P-201ENST00000384651 107 ntBASIC1.83□□□□□ -2.12
HOXA4Q00056 RN7SKP223-201ENST00000410582 62 ntBASIC1.83□□□□□ -2.12
HOXA4Q00056 AC093850.1-201ENST00000454121 251 ntBASIC1.83□□□□□ -2.12
HOXA4Q00056 AC099513.1-201ENST00000490423 301 ntBASIC1.83□□□□□ -2.12
HOXA4Q00056 CYCTP-201ENST00000504253 315 ntBASIC1.83□□□□□ -2.12
HOXA4Q00056 RNU7-12P-201ENST00000516030 62 ntBASIC1.83□□□□□ -2.12
HOXA4Q00056 SNORA31.11-201ENST00000516528 139 ntBASIC1.83□□□□□ -2.12
HOXA4Q00056 AC078899.2-201ENST00000595282 212 ntBASIC1.83□□□□□ -2.12
HOXA4Q00056 AC021506.2-201ENST00000612354 169 ntBASIC1.83□□□□□ -2.12
HOXA4Q00056 ZNF658B-202ENST00000615961 3375 ntBASIC1.82□□□□□ -2.12
HOXA4Q00056 SNORA16B-201ENST00000364674 135 ntBASIC1.82□□□□□ -2.12
HOXA4Q00056 Y_RNA.280-201ENST00000364765 112 ntBASIC1.82□□□□□ -2.12
HOXA4Q00056 MIR539-201ENST00000365690 78 ntBASIC1.82□□□□□ -2.12
HOXA4Q00056 SNORA40.5-201ENST00000391061 128 ntBASIC1.82□□□□□ -2.12
HOXA4Q00056 MIR891A-201ENST00000401237 79 ntBASIC1.82□□□□□ -2.12
HOXA4Q00056 RNU7-34P-201ENST00000459394 64 ntBASIC1.82□□□□□ -2.12
HOXA4Q00056 SNORA31.17-201ENST00000516953 127 ntBASIC1.82□□□□□ -2.12
HOXA4Q00056 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.82□□□□□ -2.12
HOXA4Q00056 MIR4709-201ENST00000577272 72 ntBASIC1.82□□□□□ -2.12
HOXA4Q00056 MIR6873-201ENST00000622788 63 ntBASIC1.82□□□□□ -2.12
HOXA4Q00056 AC027279.3-201ENST00000625055 122 ntBASIC1.82□□□□□ -2.12
HOXA4Q00056 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.82□□□□□ -2.12
HOXA4Q00056 AC005336.3-201ENST00000623833 2679 ntBASIC1.82□□□□□ -2.12
HOXA4Q00056 SNORA63.4-201ENST00000362763 126 ntBASIC1.81□□□□□ -2.12
HOXA4Q00056 Y_RNA.120-201ENST00000363304 110 ntBASIC1.81□□□□□ -2.12
HOXA4Q00056 RNU6-80P-201ENST00000384195 107 ntBASIC1.81□□□□□ -2.12
HOXA4Q00056 RNU6-938P-201ENST00000411285 103 ntBASIC1.81□□□□□ -2.12
HOXA4Q00056 Y_RNA.629-201ENST00000411368 105 ntBASIC1.81□□□□□ -2.12
HOXA4Q00056 HMGN2P32-201ENST00000444648 269 ntBASIC1.81□□□□□ -2.12
HOXA4Q00056 snoU13.27-201ENST00000459278 104 ntBASIC1.81□□□□□ -2.12
HOXA4Q00056 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.81□□□□□ -2.12
HOXA4Q00056 RNU4-57P-201ENST00000515980 135 ntBASIC1.81□□□□□ -2.12
HOXA4Q00056 RNA5SP481-201ENST00000516814 122 ntBASIC1.81□□□□□ -2.12
HOXA4Q00056 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.81□□□□□ -2.12
HOXA4Q00056 MIR3121-201ENST00000579680 77 ntBASIC1.81□□□□□ -2.12
HOXA4Q00056 MIR4513-201ENST00000581077 86 ntBASIC1.81□□□□□ -2.12
HOXA4Q00056 MIR5002-201ENST00000584713 97 ntBASIC1.81□□□□□ -2.12
HOXA4Q00056 AL049779.4-201ENST00000604500 156 ntBASIC1.81□□□□□ -2.12
HOXA4Q00056 U7.2-201ENST00000607576 63 ntBASIC1.81□□□□□ -2.12
HOXA4Q00056 AC009831.4-201ENST00000620744 325 ntBASIC1.81□□□□□ -2.12
HOXA4Q00056 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.81□□□□□ -2.12
HOXA4Q00056 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
HOXA4Q00056 Y_RNA.37-201ENST00000362606 108 ntBASIC1.8□□□□□ -2.12
HOXA4Q00056 SNORD115-28-201ENST00000363931 81 ntBASIC1.8□□□□□ -2.12
HOXA4Q00056 SNORA67.1-201ENST00000364749 141 ntBASIC1.8□□□□□ -2.12
HOXA4Q00056 RNU6-1325P-201ENST00000364905 105 ntBASIC1.8□□□□□ -2.12
HOXA4Q00056 SNORD18B-201ENST00000365659 72 ntBASIC1.8□□□□□ -2.12
HOXA4Q00056 AC015922.2-201ENST00000435593 184 ntBASIC1.8□□□□□ -2.12
HOXA4Q00056 RNA5SP57-201ENST00000459463 123 ntBASIC1.8□□□□□ -2.12
HOXA4Q00056 RNU6-772P-201ENST00000516042 105 ntBASIC1.8□□□□□ -2.12
HOXA4Q00056 RNU1-41P-201ENST00000516161 162 ntBASIC1.8□□□□□ -2.12
HOXA4Q00056 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.8□□□□□ -2.12
HOXA4Q00056 RNU1-48P-201ENST00000516400 162 ntBASIC1.8□□□□□ -2.12
HOXA4Q00056 Y_RNA.690-201ENST00000516603 95 ntBASIC1.8□□□□□ -2.12
HOXA4Q00056 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.8□□□□□ -2.12
HOXA4Q00056 Y_RNA.783-201ENST00000613546 102 ntBASIC1.8□□□□□ -2.12
HOXA4Q00056 MIR6129-201ENST00000616087 109 ntBASIC1.8□□□□□ -2.12
HOXA4Q00056 AC134878.1-201ENST00000619901 243 ntBASIC1.8□□□□□ -2.12
HOXA4Q00056 AC015726.2-201ENST00000620112 122 ntBASIC1.8□□□□□ -2.12
HOXA4Q00056 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.79□□□□□ -2.12
HOXA4Q00056 RNU6-833P-201ENST00000363486 107 ntBASIC1.79□□□□□ -2.12
HOXA4Q00056 AL603914.1-201ENST00000401964 204 ntBASIC1.79□□□□□ -2.12
HOXA4Q00056 AL035461.1-201ENST00000421490 332 ntBASIC1.79□□□□□ -2.12
HOXA4Q00056 AL445646.1-201ENST00000431784 216 ntBASIC1.79□□□□□ -2.12
HOXA4Q00056 RNU5E-3P-201ENST00000515913 68 ntBASIC1.79□□□□□ -2.12
HOXA4Q00056 Y_RNA.692-201ENST00000516627 105 ntBASIC1.79□□□□□ -2.12
HOXA4Q00056 SNORD36C-201ENST00000516733 66 ntBASIC1.79□□□□□ -2.12
HOXA4Q00056 RNU6-1149P-201ENST00000516810 97 ntBASIC1.79□□□□□ -2.12
HOXA4Q00056 IGKV1-22-201ENST00000524313 326 ntBASIC1.79□□□□□ -2.12
HOXA4Q00056 MIR4778-201ENST00000577635 80 ntBASIC1.79□□□□□ -2.12
HOXA4Q00056 U8.2-201ENST00000363156 134 ntBASIC1.78□□□□□ -2.12
HOXA4Q00056 Y_RNA.273-201ENST00000364703 102 ntBASIC1.78□□□□□ -2.12
HOXA4Q00056 RNA5SP160-201ENST00000364866 120 ntBASIC1.78□□□□□ -2.12
HOXA4Q00056 MIR144-201ENST00000384886 86 ntBASIC1.78□□□□□ -2.12
HOXA4Q00056 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.78□□□□□ -2.12
HOXA4Q00056 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
HOXA4Q00056 Y_RNA.651-201ENST00000459380 103 ntBASIC1.78□□□□□ -2.12
HOXA4Q00056 AC104435.1-201ENST00000483483 166 ntBASIC1.78□□□□□ -2.12
HOXA4Q00056 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.78□□□□□ -2.12
HOXA4Q00056 SNORD33.1-201ENST00000516213 88 ntBASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms