Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 Y_RNA.197-201ENST00000364004 102 ntBASIC0.44□□□□□ -2.34
PKNOX1P55347 SNORA1.2-201ENST00000365189 134 ntBASIC0.44□□□□□ -2.34
PKNOX1P55347 SNORD114-22-201ENST00000365423 72 ntBASIC0.44□□□□□ -2.34
PKNOX1P55347 RNU6-102P-201ENST00000384485 104 ntBASIC0.44□□□□□ -2.34
PKNOX1P55347 RNU6-205P-201ENST00000390858 107 ntBASIC0.44□□□□□ -2.34
PKNOX1P55347 RNU6-308P-201ENST00000390957 107 ntBASIC0.44□□□□□ -2.34
PKNOX1P55347 RNU6-1009P-201ENST00000390996 107 ntBASIC0.44□□□□□ -2.34
PKNOX1P55347 RNU6-847P-201ENST00000411115 108 ntBASIC0.44□□□□□ -2.34
PKNOX1P55347 AC090844.1-201ENST00000422019 156 ntBASIC0.44□□□□□ -2.34
PKNOX1P55347 AC092628.1-201ENST00000436250 252 ntBASIC0.44□□□□□ -2.34
PKNOX1P55347 RNU7-25P-201ENST00000516544 62 ntBASIC0.44□□□□□ -2.34
PKNOX1P55347 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
PKNOX1P55347 RMST_2.1-201ENST00000617263 136 ntBASIC0.44□□□□□ -2.34
PKNOX1P55347 AC022140.2-201ENST00000623500 188 ntBASIC0.44□□□□□ -2.34
PKNOX1P55347 Y_RNA.4-201ENST00000362333 112 ntBASIC0.43□□□□□ -2.34
PKNOX1P55347 Y_RNA.112-201ENST00000363250 102 ntBASIC0.43□□□□□ -2.34
PKNOX1P55347 Y_RNA.224-201ENST00000364308 111 ntBASIC0.43□□□□□ -2.34
PKNOX1P55347 Y_RNA.376-201ENST00000365638 108 ntBASIC0.43□□□□□ -2.34
PKNOX1P55347 Y_RNA.494-201ENST00000384432 111 ntBASIC0.43□□□□□ -2.34
PKNOX1P55347 Y_RNA.547-201ENST00000384654 119 ntBASIC0.43□□□□□ -2.34
PKNOX1P55347 RNU6-1237P-201ENST00000384777 107 ntBASIC0.43□□□□□ -2.34
PKNOX1P55347 RNU6-763P-201ENST00000390865 106 ntBASIC0.43□□□□□ -2.34
PKNOX1P55347 RNU6-1248P-201ENST00000391096 64 ntBASIC0.43□□□□□ -2.34
PKNOX1P55347 MIR1302-11-201ENST00000408051 138 ntBASIC0.43□□□□□ -2.34
PKNOX1P55347 MIR1302-9-201ENST00000408365 138 ntBASIC0.43□□□□□ -2.34
PKNOX1P55347 MIR1302-10-201ENST00000408734 138 ntBASIC0.43□□□□□ -2.34
PKNOX1P55347 RNU6-177P-201ENST00000411257 104 ntBASIC0.43□□□□□ -2.34
PKNOX1P55347 AC114737.2-201ENST00000421583 173 ntBASIC0.43□□□□□ -2.34
PKNOX1P55347 HSPE1P25-201ENST00000455484 251 ntBASIC0.43□□□□□ -2.34
PKNOX1P55347 Z83818.1-201ENST00000603584 150 ntBASIC0.43□□□□□ -2.34
PKNOX1P55347 AL078603.1-201ENST00000603824 313 ntBASIC0.43□□□□□ -2.34
PKNOX1P55347 MIR1302-2-201ENST00000607096 138 ntBASIC0.43□□□□□ -2.34
PKNOX1P55347 AL021707.8-201ENST00000609428 183 ntBASIC0.43□□□□□ -2.34
PKNOX1P55347 MIR6504-201ENST00000613520 61 ntBASIC0.43□□□□□ -2.34
PKNOX1P55347 RNA5SP347-201ENST00000362445 119 ntBASIC0.42□□□□□ -2.34
PKNOX1P55347 Y_RNA.136-201ENST00000363444 102 ntBASIC0.42□□□□□ -2.34
PKNOX1P55347 SNORD113-8-201ENST00000363497 74 ntBASIC0.42□□□□□ -2.34
PKNOX1P55347 RNU6-899P-201ENST00000363947 107 ntBASIC0.42□□□□□ -2.34
PKNOX1P55347 SNORA36.2-201ENST00000384004 127 ntBASIC0.42□□□□□ -2.34
PKNOX1P55347 SNORA24-201ENST00000384096 131 ntBASIC0.42□□□□□ -2.34
PKNOX1P55347 MIR573-201ENST00000384964 99 ntBASIC0.42□□□□□ -2.34
PKNOX1P55347 MIR548O-201ENST00000408583 114 ntBASIC0.42□□□□□ -2.34
PKNOX1P55347 SNORD83.1-201ENST00000411362 77 ntBASIC0.42□□□□□ -2.34
PKNOX1P55347 AC015818.7-201ENST00000428754 109 ntBASIC0.42□□□□□ -2.34
PKNOX1P55347 AC087499.7-201ENST00000441958 109 ntBASIC0.42□□□□□ -2.34
PKNOX1P55347 RPS29P1-201ENST00000465274 159 ntBASIC0.42□□□□□ -2.34
PKNOX1P55347 SCARNA8-201ENST00000515924 131 ntBASIC0.42□□□□□ -2.34
PKNOX1P55347 RNU6-764P-201ENST00000516396 105 ntBASIC0.42□□□□□ -2.34
PKNOX1P55347 RNU6-1007P-201ENST00000516586 107 ntBASIC0.42□□□□□ -2.34
PKNOX1P55347 uc_338.22-201ENST00000622722 187 ntBASIC0.42□□□□□ -2.34
PKNOX1P55347 Y_RNA.242-201ENST00000364473 110 ntBASIC0.41□□□□□ -2.34
PKNOX1P55347 MTND5P20-201ENST00000448677 143 ntBASIC0.41□□□□□ -2.34
PKNOX1P55347 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC0.41□□□□□ -2.34
PKNOX1P55347 MRPS35P2-201ENST00000508242 191 ntBASIC0.41□□□□□ -2.34
PKNOX1P55347 RNU6-1170P-201ENST00000515974 106 ntBASIC0.41□□□□□ -2.34
PKNOX1P55347 RNU6-496P-201ENST00000516145 99 ntBASIC0.41□□□□□ -2.34
PKNOX1P55347 RN7SKP12-201ENST00000516275 143 ntBASIC0.41□□□□□ -2.34
PKNOX1P55347 Y_RNA.715-201ENST00000517082 110 ntBASIC0.41□□□□□ -2.34
PKNOX1P55347 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.41□□□□□ -2.34
PKNOX1P55347 MIR4264-201ENST00000583520 66 ntBASIC0.41□□□□□ -2.34
PKNOX1P55347 AL512605.2-201ENST00000592972 256 ntBASIC0.41□□□□□ -2.34
PKNOX1P55347 AP000753.3-201ENST00000604083 169 ntBASIC0.41□□□□□ -2.34
PKNOX1P55347 MIR8070-201ENST00000616510 88 ntBASIC0.41□□□□□ -2.34
PKNOX1P55347 uc_338.4-201ENST00000616635 176 ntBASIC0.41□□□□□ -2.34
PKNOX1P55347 MIR140-201ENST00000385282 100 ntBASIC0.4□□□□□ -2.35
PKNOX1P55347 Y_RNA.602-201ENST00000410535 92 ntBASIC0.4□□□□□ -2.35
PKNOX1P55347 RNU6-383P-201ENST00000410864 94 ntBASIC0.4□□□□□ -2.35
PKNOX1P55347 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.4□□□□□ -2.35
PKNOX1P55347 AC244023.1-201ENST00000426884 112 ntBASIC0.4□□□□□ -2.35
PKNOX1P55347 Y_RNA.637-201ENST00000459424 114 ntBASIC0.4□□□□□ -2.35
PKNOX1P55347 AC091959.1-201ENST00000495857 238 ntBASIC0.4□□□□□ -2.35
PKNOX1P55347 RNU7-149P-201ENST00000516739 59 ntBASIC0.4□□□□□ -2.35
PKNOX1P55347 Y_RNA.702-201ENST00000516843 96 ntBASIC0.4□□□□□ -2.35
PKNOX1P55347 AC007751.1-201ENST00000529260 376 ntBASIC0.4□□□□□ -2.35
PKNOX1P55347 MIR4452-201ENST00000583004 71 ntBASIC0.4□□□□□ -2.35
PKNOX1P55347 MIR4795-201ENST00000584182 89 ntBASIC0.4□□□□□ -2.35
PKNOX1P55347 C8orf59P2-201ENST00000603441 271 ntBASIC0.4□□□□□ -2.35
PKNOX1P55347 AC242498.1-201ENST00000604134 111 ntBASIC0.4□□□□□ -2.35
PKNOX1P55347 LARP7P1-201ENST00000605576 316 ntBASIC0.4□□□□□ -2.35
PKNOX1P55347 MIR376A1-201ENST00000616574 68 ntBASIC0.4□□□□□ -2.35
PKNOX1P55347 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.4□□□□□ -2.35
PKNOX1P55347 RNU4-73P-201ENST00000363164 141 ntBASIC0.39□□□□□ -2.35
PKNOX1P55347 RNU6-1205P-201ENST00000363625 106 ntBASIC0.39□□□□□ -2.35
PKNOX1P55347 RNU6-934P-201ENST00000365154 107 ntBASIC0.39□□□□□ -2.35
PKNOX1P55347 Y_RNA.395-201ENST00000383945 109 ntBASIC0.39□□□□□ -2.35
PKNOX1P55347 RNU6-144P-201ENST00000383951 107 ntBASIC0.39□□□□□ -2.35
PKNOX1P55347 MIR520F-201ENST00000384824 87 ntBASIC0.39□□□□□ -2.35
PKNOX1P55347 MIR520H-201ENST00000385126 88 ntBASIC0.39□□□□□ -2.35
PKNOX1P55347 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.39□□□□□ -2.35
PKNOX1P55347 SNORD115-46-201ENST00000390982 71 ntBASIC0.39□□□□□ -2.35
PKNOX1P55347 Y_RNA.645-201ENST00000391229 102 ntBASIC0.39□□□□□ -2.35
PKNOX1P55347 MTCO2P12-201ENST00000427426 682 ntBASIC0.39□□□□□ -2.35
PKNOX1P55347 MTCO1P5-201ENST00000433573 344 ntBASIC0.39□□□□□ -2.35
PKNOX1P55347 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.39□□□□□ -2.35
PKNOX1P55347 MTND4P19-201ENST00000446659 478 ntBASIC0.39□□□□□ -2.35
PKNOX1P55347 MTND3P22-201ENST00000510932 243 ntBASIC0.39□□□□□ -2.35
PKNOX1P55347 RNU6-397P-201ENST00000516226 104 ntBASIC0.39□□□□□ -2.35
PKNOX1P55347 MIR4771-2-201ENST00000577758 74 ntBASIC0.39□□□□□ -2.35
PKNOX1P55347 MIR4771-1-201ENST00000582617 74 ntBASIC0.39□□□□□ -2.35
PKNOX1P55347 MIR151B-201ENST00000584249 96 ntBASIC0.39□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms