Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNU7-110P-201ENST00000516891 62 ntBASIC0.24□□□□□ -2.37
FOXA1P55317 MIR2681-201ENST00000581814 105 ntBASIC0.24□□□□□ -2.37
FOXA1P55317 AL080274.1-201ENST00000605565 220 ntBASIC0.24□□□□□ -2.37
FOXA1P55317 Y_RNA.772-201ENST00000606692 102 ntBASIC0.24□□□□□ -2.37
FOXA1P55317 AC011373.1-201ENST00000607270 237 ntBASIC0.24□□□□□ -2.37
FOXA1P55317 AC092794.1-201ENST00000612734 582 ntBASIC0.24□□□□□ -2.37
FOXA1P55317 AC025253.1-201ENST00000613623 543 ntBASIC0.24□□□□□ -2.37
FOXA1P55317 RNA5SP257-201ENST00000363023 116 ntBASIC0.23□□□□□ -2.37
FOXA1P55317 Y_RNA.259-201ENST00000364619 101 ntBASIC0.23□□□□□ -2.37
FOXA1P55317 SNORA1.2-201ENST00000365189 134 ntBASIC0.23□□□□□ -2.37
FOXA1P55317 RNU6-1040P-201ENST00000383974 107 ntBASIC0.23□□□□□ -2.37
FOXA1P55317 Y_RNA.458-201ENST00000384240 102 ntBASIC0.23□□□□□ -2.37
FOXA1P55317 RNU6-125P-201ENST00000384505 107 ntBASIC0.23□□□□□ -2.37
FOXA1P55317 SNORD116-29-201ENST00000384516 83 ntBASIC0.23□□□□□ -2.37
FOXA1P55317 SNORA36B-201ENST00000410438 131 ntBASIC0.23□□□□□ -2.37
FOXA1P55317 RNU6-847P-201ENST00000411115 108 ntBASIC0.23□□□□□ -2.37
FOXA1P55317 RNU2-13P-201ENST00000515909 113 ntBASIC0.23□□□□□ -2.37
FOXA1P55317 AP000753.3-201ENST00000604083 169 ntBASIC0.23□□□□□ -2.37
FOXA1P55317 AC006441.5-201ENST00000612680 209 ntBASIC0.23□□□□□ -2.37
FOXA1P55317 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.23□□□□□ -2.37
FOXA1P55317 MIRLET7D-201ENST00000362263 87 ntBASIC0.22□□□□□ -2.37
FOXA1P55317 MIR18A-201ENST00000362310 71 ntBASIC0.22□□□□□ -2.37
FOXA1P55317 RNU6-674P-201ENST00000363831 107 ntBASIC0.22□□□□□ -2.37
FOXA1P55317 RNU6-1048P-201ENST00000364054 107 ntBASIC0.22□□□□□ -2.37
FOXA1P55317 Y_RNA.251-201ENST00000364551 99 ntBASIC0.22□□□□□ -2.37
FOXA1P55317 Y_RNA.428-201ENST00000384078 102 ntBASIC0.22□□□□□ -2.37
FOXA1P55317 Y_RNA.463-201ENST00000384271 102 ntBASIC0.22□□□□□ -2.37
FOXA1P55317 RNY4P36-201ENST00000391116 96 ntBASIC0.22□□□□□ -2.37
FOXA1P55317 RNU6ATAC25P-201ENST00000408798 117 ntBASIC0.22□□□□□ -2.37
FOXA1P55317 RNU4-30P-201ENST00000410245 143 ntBASIC0.22□□□□□ -2.37
FOXA1P55317 RNU2-14P-201ENST00000411053 191 ntBASIC0.22□□□□□ -2.37
FOXA1P55317 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.22□□□□□ -2.37
FOXA1P55317 SNORD11-201ENST00000459124 84 ntBASIC0.22□□□□□ -2.37
FOXA1P55317 RNU7-141P-201ENST00000459304 62 ntBASIC0.22□□□□□ -2.37
FOXA1P55317 AC010655.3-201ENST00000478818 450 ntBASIC0.22□□□□□ -2.37
FOXA1P55317 SCARNA8-201ENST00000515924 131 ntBASIC0.22□□□□□ -2.37
FOXA1P55317 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.22□□□□□ -2.37
FOXA1P55317 MIR4771-2-201ENST00000577758 74 ntBASIC0.22□□□□□ -2.37
FOXA1P55317 MIR4771-1-201ENST00000582617 74 ntBASIC0.22□□□□□ -2.37
FOXA1P55317 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.22□□□□□ -2.37
FOXA1P55317 U6atac.1-201ENST00000616025 117 ntBASIC0.22□□□□□ -2.37
FOXA1P55317 RNU4-50P-201ENST00000364361 141 ntBASIC0.21□□□□□ -2.38
FOXA1P55317 Y_RNA.387-201ENST00000383918 102 ntBASIC0.21□□□□□ -2.38
FOXA1P55317 RNU6-937P-201ENST00000384325 106 ntBASIC0.21□□□□□ -2.38
FOXA1P55317 Y_RNA.551-201ENST00000384661 102 ntBASIC0.21□□□□□ -2.38
FOXA1P55317 Y_RNA.681-201ENST00000516445 113 ntBASIC0.21□□□□□ -2.38
FOXA1P55317 RNA5SP134-201ENST00000516492 96 ntBASIC0.21□□□□□ -2.38
FOXA1P55317 SNORA62.5-201ENST00000516634 120 ntBASIC0.21□□□□□ -2.38
FOXA1P55317 Y_RNA.718-201ENST00000517110 102 ntBASIC0.21□□□□□ -2.38
FOXA1P55317 SNORD116.3-201ENST00000517176 78 ntBASIC0.21□□□□□ -2.38
FOXA1P55317 MIR3612-201ENST00000579753 87 ntBASIC0.21□□□□□ -2.38
FOXA1P55317 MIR5093-201ENST00000583199 100 ntBASIC0.21□□□□□ -2.38
FOXA1P55317 MIR4264-201ENST00000583520 66 ntBASIC0.21□□□□□ -2.38
FOXA1P55317 AC005357.1-201ENST00000588399 301 ntBASIC0.21□□□□□ -2.38
FOXA1P55317 AC023932.2-201ENST00000603176 175 ntBASIC0.21□□□□□ -2.38
FOXA1P55317 LARP7P1-201ENST00000605576 316 ntBASIC0.21□□□□□ -2.38
FOXA1P55317 AL162730.1-201ENST00000605734 292 ntBASIC0.21□□□□□ -2.38
FOXA1P55317 uc_338.4-201ENST00000616635 176 ntBASIC0.21□□□□□ -2.38
FOXA1P55317 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.21□□□□□ -2.38
FOXA1P55317 RNU6-801P-201ENST00000364087 105 ntBASIC0.2□□□□□ -2.38
FOXA1P55317 SNORA72.4-201ENST00000384174 132 ntBASIC0.2□□□□□ -2.38
FOXA1P55317 Y_RNA.496-201ENST00000384444 101 ntBASIC0.2□□□□□ -2.38
FOXA1P55317 RNU6-21P-201ENST00000384710 107 ntBASIC0.2□□□□□ -2.38
FOXA1P55317 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.2□□□□□ -2.38
FOXA1P55317 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.2□□□□□ -2.38
FOXA1P55317 AC090844.1-201ENST00000422019 156 ntBASIC0.2□□□□□ -2.38
FOXA1P55317 MTND1P14-201ENST00000427400 950 ntBASIC0.2□□□□□ -2.38
FOXA1P55317 RNU6-277P-201ENST00000516272 106 ntBASIC0.2□□□□□ -2.38
FOXA1P55317 RNU6-1007P-201ENST00000516586 107 ntBASIC0.2□□□□□ -2.38
FOXA1P55317 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.2□□□□□ -2.38
FOXA1P55317 MIR4804-201ENST00000581683 73 ntBASIC0.2□□□□□ -2.38
FOXA1P55317 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.2□□□□□ -2.38
FOXA1P55317 MIR4676-201ENST00000583078 72 ntBASIC0.2□□□□□ -2.38
FOXA1P55317 AC020891.4-201ENST00000605745 93 ntBASIC0.2□□□□□ -2.38
FOXA1P55317 AL121655.1-201ENST00000605811 308 ntBASIC0.2□□□□□ -2.38
FOXA1P55317 RNU4-80P-201ENST00000363200 141 ntBASIC0.19□□□□□ -2.38
FOXA1P55317 Y_RNA.242-201ENST00000364473 110 ntBASIC0.19□□□□□ -2.38
FOXA1P55317 RNU4-45P-201ENST00000365469 141 ntBASIC0.19□□□□□ -2.38
FOXA1P55317 Y_RNA.383-201ENST00000383855 97 ntBASIC0.19□□□□□ -2.38
FOXA1P55317 SNORD63-201ENST00000384262 68 ntBASIC0.19□□□□□ -2.38
FOXA1P55317 RNA5SP63-201ENST00000391225 112 ntBASIC0.19□□□□□ -2.38
FOXA1P55317 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.19□□□□□ -2.38
FOXA1P55317 AC098614.3-201ENST00000438957 440 ntBASIC0.19□□□□□ -2.38
FOXA1P55317 RNU7-25P-201ENST00000516544 62 ntBASIC0.19□□□□□ -2.38
FOXA1P55317 RPS29P30-201ENST00000600975 111 ntBASIC0.19□□□□□ -2.38
FOXA1P55317 AC092447.9-201ENST00000603395 144 ntBASIC0.19□□□□□ -2.38
FOXA1P55317 AC084781.2-201ENST00000615568 161 ntBASIC0.19□□□□□ -2.38
FOXA1P55317 MIR6718-201ENST00000616153 80 ntBASIC0.19□□□□□ -2.38
FOXA1P55317 AC104985.2-201ENST00000620598 500 ntBASIC0.19□□□□□ -2.38
FOXA1P55317 AC139792.2-201ENST00000624218 587 ntBASIC0.19□□□□□ -2.38
FOXA1P55317 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.19□□□□□ -2.38
FOXA1P55317 AC090625.1-201ENST00000357130 210 ntBASIC0.18□□□□□ -2.38
FOXA1P55317 Y_RNA.143-201ENST00000363520 106 ntBASIC0.18□□□□□ -2.38
FOXA1P55317 RNU4-67P-201ENST00000364569 141 ntBASIC0.18□□□□□ -2.38
FOXA1P55317 Y_RNA.384-201ENST00000383909 102 ntBASIC0.18□□□□□ -2.38
FOXA1P55317 Y_RNA.439-201ENST00000384119 94 ntBASIC0.18□□□□□ -2.38
FOXA1P55317 Y_RNA.547-201ENST00000384654 119 ntBASIC0.18□□□□□ -2.38
FOXA1P55317 SNORA26.5-201ENST00000391215 123 ntBASIC0.18□□□□□ -2.38
FOXA1P55317 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.18□□□□□ -2.38
FOXA1P55317 BTF3P11-201ENST00000426582 477 ntBASIC0.18□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 169.2 ms