Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNA5SP282-201ENST00000516355 108 ntBASIC2.6□□□□□ -1.99
LIG3P49916 SCARNA16.3-201ENST00000516595 184 ntBASIC2.6□□□□□ -1.99
LIG3P49916 AC108081.1-201ENST00000604358 221 ntBASIC2.6□□□□□ -1.99
LIG3P49916 MIR6817-201ENST00000615588 66 ntBASIC2.6□□□□□ -1.99
LIG3P49916 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.6□□□□□ -1.99
LIG3P49916 AC007336.1-201ENST00000576365 3828 ntBASIC2.59□□□□□ -1.99
LIG3P49916 MIR449A-201ENST00000362113 91 ntBASIC2.59□□□□□ -1.99
LIG3P49916 MIR144-201ENST00000384886 86 ntBASIC2.59□□□□□ -1.99
LIG3P49916 RPL23AP94-201ENST00000512518 302 ntBASIC2.59□□□□□ -1.99
LIG3P49916 RNU6-830P-201ENST00000516353 107 ntBASIC2.59□□□□□ -1.99
LIG3P49916 RNA5SP148-201ENST00000516527 94 ntBASIC2.59□□□□□ -1.99
LIG3P49916 RNU7-193P-201ENST00000516723 65 ntBASIC2.59□□□□□ -1.99
LIG3P49916 AL670379.3-201ENST00000605040 251 ntBASIC2.59□□□□□ -1.99
LIG3P49916 MIR6129-201ENST00000616087 109 ntBASIC2.59□□□□□ -1.99
LIG3P49916 ZNF720P1-201ENST00000562403 1939 ntBASIC2.59□□□□□ -1.99
LIG3P49916 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.58□□□□□ -2
LIG3P49916 Y_RNA.440-201ENST00000384120 114 ntBASIC2.58□□□□□ -2
LIG3P49916 RNU6-938P-201ENST00000411285 103 ntBASIC2.58□□□□□ -2
LIG3P49916 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC2.58□□□□□ -2
LIG3P49916 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.58□□□□□ -2
LIG3P49916 IGLV3-17-201ENST00000519099 244 ntBASIC2.58□□□□□ -2
LIG3P49916 AC021506.2-201ENST00000612354 169 ntBASIC2.58□□□□□ -2
LIG3P49916 AC025166.1-201ENST00000612411 163 ntBASIC2.58□□□□□ -2
LIG3P49916 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.58□□□□□ -2
LIG3P49916 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
LIG3P49916 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
LIG3P49916 RNU6-44P-201ENST00000384045 107 ntBASIC2.57□□□□□ -2
LIG3P49916 MIR452-201ENST00000385020 85 ntBASIC2.57□□□□□ -2
LIG3P49916 MIRLET7F2-201ENST00000385277 83 ntBASIC2.57□□□□□ -2
LIG3P49916 MIR548A3-201ENST00000385297 97 ntBASIC2.57□□□□□ -2
LIG3P49916 AL627390.1-201ENST00000396055 340 ntBASIC2.57□□□□□ -2
LIG3P49916 RNU7-80P-201ENST00000459562 61 ntBASIC2.57□□□□□ -2
LIG3P49916 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.57□□□□□ -2
LIG3P49916 AL121890.5-201ENST00000620848 304 ntBASIC2.57□□□□□ -2
LIG3P49916 AL513423.1-201ENST00000621695 132 ntBASIC2.57□□□□□ -2
LIG3P49916 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.57□□□□□ -2
LIG3P49916 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
LIG3P49916 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.56□□□□□ -2
LIG3P49916 RNU1-133P-201ENST00000364867 167 ntBASIC2.56□□□□□ -2
LIG3P49916 Y_RNA.454-201ENST00000384224 113 ntBASIC2.56□□□□□ -2
LIG3P49916 RNU6-429P-201ENST00000384582 108 ntBASIC2.56□□□□□ -2
LIG3P49916 RPS26P48-201ENST00000491713 339 ntBASIC2.56□□□□□ -2
LIG3P49916 MIR5092-201ENST00000583139 88 ntBASIC2.56□□□□□ -2
LIG3P49916 AL137067.1-201ENST00000615933 120 ntBASIC2.56□□□□□ -2
LIG3P49916 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.56□□□□□ -2
LIG3P49916 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
LIG3P49916 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
LIG3P49916 Y_RNA.241-201ENST00000364470 117 ntBASIC2.55□□□□□ -2
LIG3P49916 MIR27B-201ENST00000385129 97 ntBASIC2.55□□□□□ -2
LIG3P49916 MIR1263-201ENST00000408324 86 ntBASIC2.55□□□□□ -2
LIG3P49916 RNA5SP100-201ENST00000410903 110 ntBASIC2.55□□□□□ -2
LIG3P49916 RNA5SP59-201ENST00000410922 110 ntBASIC2.55□□□□□ -2
LIG3P49916 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.55□□□□□ -2
LIG3P49916 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.55□□□□□ -2
LIG3P49916 IGKV1-22-201ENST00000524313 326 ntBASIC2.55□□□□□ -2
LIG3P49916 AC078899.2-201ENST00000595282 212 ntBASIC2.55□□□□□ -2
LIG3P49916 DLEU2_5.2-201ENST00000610606 84 ntBASIC2.55□□□□□ -2
LIG3P49916 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.55□□□□□ -2
LIG3P49916 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.55□□□□□ -2
LIG3P49916 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
LIG3P49916 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.54□□□□□ -2
LIG3P49916 RNU4-82P-201ENST00000362443 140 ntBASIC2.54□□□□□ -2
LIG3P49916 RNU6-690P-201ENST00000365242 106 ntBASIC2.54□□□□□ -2
LIG3P49916 Y_RNA.351-201ENST00000365436 96 ntBASIC2.54□□□□□ -2
LIG3P49916 Y_RNA.366-201ENST00000365540 102 ntBASIC2.54□□□□□ -2
LIG3P49916 RNA5SP136-201ENST00000410906 107 ntBASIC2.54□□□□□ -2
LIG3P49916 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.54□□□□□ -2
LIG3P49916 RNU6-240P-201ENST00000516098 97 ntBASIC2.54□□□□□ -2
LIG3P49916 RNA5SP320-201ENST00000516263 124 ntBASIC2.54□□□□□ -2
LIG3P49916 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.54□□□□□ -2
LIG3P49916 AC121758.2-201ENST00000553271 193 ntBASIC2.54□□□□□ -2
LIG3P49916 MIR4778-201ENST00000577635 80 ntBASIC2.54□□□□□ -2
LIG3P49916 AC245884.12-201ENST00000615364 59 ntBASIC2.54□□□□□ -2
LIG3P49916 MTND5P18-201ENST00000445624 1801 ntBASIC2.54□□□□□ -2
LIG3P49916 AL442644.1-201ENST00000454390 3105 ntBASIC2.53□□□□□ -2
LIG3P49916 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
LIG3P49916 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
LIG3P49916 SNORA67.1-201ENST00000364749 141 ntBASIC2.53□□□□□ -2
LIG3P49916 RNY1P6-201ENST00000384193 109 ntBASIC2.53□□□□□ -2
LIG3P49916 MIR660-201ENST00000385235 97 ntBASIC2.53□□□□□ -2
LIG3P49916 PGBD4P5-201ENST00000445958 426 ntBASIC2.53□□□□□ -2
LIG3P49916 AL513328.1-201ENST00000446460 224 ntBASIC2.53□□□□□ -2
LIG3P49916 MIR4298-201ENST00000584380 73 ntBASIC2.53□□□□□ -2
LIG3P49916 U4.3-201ENST00000621047 82 ntBASIC2.53□□□□□ -2
LIG3P49916 SNORD3E-202ENST00000627253 216 ntBASIC2.53□□□□□ -2
LIG3P49916 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.53□□□□□ -2
LIG3P49916 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
LIG3P49916 AL391516.1-201ENST00000554380 2449 ntBASIC2.52□□□□□ -2.01
LIG3P49916 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
LIG3P49916 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
LIG3P49916 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
LIG3P49916 SNORD115-34-201ENST00000362441 82 ntBASIC2.52□□□□□ -2.01
LIG3P49916 SNORD115-12-201ENST00000362583 82 ntBASIC2.52□□□□□ -2.01
LIG3P49916 SNORD115-29-201ENST00000362834 82 ntBASIC2.52□□□□□ -2.01
LIG3P49916 SNORD115-9-201ENST00000362912 82 ntBASIC2.52□□□□□ -2.01
LIG3P49916 SNORD115-21-201ENST00000362963 81 ntBASIC2.52□□□□□ -2.01
LIG3P49916 SNORD115-14-201ENST00000363090 81 ntBASIC2.52□□□□□ -2.01
LIG3P49916 SNORD115-13-201ENST00000363358 82 ntBASIC2.52□□□□□ -2.01
LIG3P49916 SNORD115-41-201ENST00000363608 82 ntBASIC2.52□□□□□ -2.01
LIG3P49916 SNORD115-11-201ENST00000363616 82 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms