Protein–RNA interactions for Protein: P48059

LIMS1, LIM and senescent cell antigen-like-containing domain protein 1, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1P48059 RNY4P29-201ENST00000410801 97 ntBASIC2.42□□□□□ -2.02
LIMS1P48059 RNU7-164P-201ENST00000459221 62 ntBASIC2.42□□□□□ -2.02
LIMS1P48059 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.42□□□□□ -2.02
LIMS1P48059 RNA5SP282-201ENST00000516355 108 ntBASIC2.42□□□□□ -2.02
LIMS1P48059 MIR4305-201ENST00000583252 102 ntBASIC2.42□□□□□ -2.02
LIMS1P48059 AC091932.4-201ENST00000623386 200 ntBASIC2.42□□□□□ -2.02
LIMS1P48059 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
LIMS1P48059 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
LIMS1P48059 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.42□□□□□ -2.02
LIMS1P48059 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
LIMS1P48059 U8.17-201ENST00000391292 132 ntBASIC2.41□□□□□ -2.02
LIMS1P48059 SNORA19.1-201ENST00000410656 129 ntBASIC2.41□□□□□ -2.02
LIMS1P48059 AC245047.3-201ENST00000429428 127 ntBASIC2.41□□□□□ -2.02
LIMS1P48059 AL135938.1-201ENST00000443141 297 ntBASIC2.41□□□□□ -2.02
LIMS1P48059 RNU7-80P-201ENST00000459562 61 ntBASIC2.41□□□□□ -2.02
LIMS1P48059 RNU6-970P-201ENST00000516312 107 ntBASIC2.41□□□□□ -2.02
LIMS1P48059 RNU7-70P-201ENST00000516941 66 ntBASIC2.41□□□□□ -2.02
LIMS1P48059 RNU6-762P-201ENST00000517107 102 ntBASIC2.41□□□□□ -2.02
LIMS1P48059 AC079600.2-201ENST00000550076 130 ntBASIC2.41□□□□□ -2.02
LIMS1P48059 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.41□□□□□ -2.02
LIMS1P48059 AC022523.2-201ENST00000561045 150 ntBASIC2.41□□□□□ -2.02
LIMS1P48059 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.41□□□□□ -2.02
LIMS1P48059 MIR4319-201ENST00000577285 85 ntBASIC2.41□□□□□ -2.02
LIMS1P48059 MIR3163-201ENST00000581592 73 ntBASIC2.41□□□□□ -2.02
LIMS1P48059 MIR5092-201ENST00000583139 88 ntBASIC2.41□□□□□ -2.02
LIMS1P48059 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
LIMS1P48059 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
LIMS1P48059 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.41□□□□□ -2.02
LIMS1P48059 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
LIMS1P48059 Y_RNA.388-201ENST00000383919 113 ntBASIC2.4□□□□□ -2.03
LIMS1P48059 Y_RNA.454-201ENST00000384224 113 ntBASIC2.4□□□□□ -2.03
LIMS1P48059 SNORA26.2-201ENST00000390922 122 ntBASIC2.4□□□□□ -2.03
LIMS1P48059 AL627390.1-201ENST00000396055 340 ntBASIC2.4□□□□□ -2.03
LIMS1P48059 ATP6V0E1P1-201ENST00000412537 226 ntBASIC2.4□□□□□ -2.03
LIMS1P48059 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.4□□□□□ -2.03
LIMS1P48059 RNU6-109P-201ENST00000516364 107 ntBASIC2.4□□□□□ -2.03
LIMS1P48059 RNU2-35P-201ENST00000516446 142 ntBASIC2.4□□□□□ -2.03
LIMS1P48059 RNU6-184P-201ENST00000516514 107 ntBASIC2.4□□□□□ -2.03
LIMS1P48059 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
LIMS1P48059 MIR6715A-201ENST00000615929 79 ntBASIC2.4□□□□□ -2.03
LIMS1P48059 AC015726.2-201ENST00000620112 122 ntBASIC2.4□□□□□ -2.03
LIMS1P48059 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
LIMS1P48059 MIRLET7C-201ENST00000362160 84 ntBASIC2.39□□□□□ -2.03
LIMS1P48059 SNORA67.1-201ENST00000364749 141 ntBASIC2.39□□□□□ -2.03
LIMS1P48059 RNA5SP508-201ENST00000411327 119 ntBASIC2.39□□□□□ -2.03
LIMS1P48059 AC087499.2-201ENST00000432861 149 ntBASIC2.39□□□□□ -2.03
LIMS1P48059 MTATP8P2-201ENST00000435212 202 ntBASIC2.39□□□□□ -2.03
LIMS1P48059 RPS12P2-201ENST00000439728 269 ntBASIC2.39□□□□□ -2.03
LIMS1P48059 SNORA18.7-201ENST00000516910 131 ntBASIC2.39□□□□□ -2.03
LIMS1P48059 MIR4446-201ENST00000578505 67 ntBASIC2.39□□□□□ -2.03
LIMS1P48059 AC078899.2-201ENST00000595282 212 ntBASIC2.39□□□□□ -2.03
LIMS1P48059 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.39□□□□□ -2.03
LIMS1P48059 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.39□□□□□ -2.03
LIMS1P48059 AL162726.3-218ENST00000636401 95 ntBASIC2.39□□□□□ -2.03
LIMS1P48059 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.39□□□□□ -2.03
LIMS1P48059 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
LIMS1P48059 AC062016.1-201ENST00000355719 319 ntBASIC2.38□□□□□ -2.03
LIMS1P48059 Y_RNA.351-201ENST00000365436 96 ntBASIC2.38□□□□□ -2.03
LIMS1P48059 SNORA31.4-201ENST00000516049 129 ntBASIC2.38□□□□□ -2.03
LIMS1P48059 MIR4778-201ENST00000577635 80 ntBASIC2.38□□□□□ -2.03
LIMS1P48059 MIR8054-201ENST00000620877 86 ntBASIC2.38□□□□□ -2.03
LIMS1P48059 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.38□□□□□ -2.03
LIMS1P48059 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
LIMS1P48059 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
LIMS1P48059 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
LIMS1P48059 MIR302B-201ENST00000362188 73 ntBASIC2.37□□□□□ -2.03
LIMS1P48059 RNU4-82P-201ENST00000362443 140 ntBASIC2.37□□□□□ -2.03
LIMS1P48059 RNU6-23P-201ENST00000363283 107 ntBASIC2.37□□□□□ -2.03
LIMS1P48059 Y_RNA.265-201ENST00000364677 108 ntBASIC2.37□□□□□ -2.03
LIMS1P48059 RNA5SP109-201ENST00000391010 116 ntBASIC2.37□□□□□ -2.03
LIMS1P48059 AC114811.1-201ENST00000507207 168 ntBASIC2.37□□□□□ -2.03
LIMS1P48059 AL442128.1-201ENST00000615151 90 ntBASIC2.37□□□□□ -2.03
LIMS1P48059 AC027279.3-201ENST00000625055 122 ntBASIC2.37□□□□□ -2.03
LIMS1P48059 MIR2052-201ENST00000636055 55 ntBASIC2.37□□□□□ -2.03
LIMS1P48059 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.37□□□□□ -2.03
LIMS1P48059 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
LIMS1P48059 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.37□□□□□ -2.03
LIMS1P48059 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.36□□□□□ -2.03
LIMS1P48059 Y_RNA.466-201ENST00000384294 113 ntBASIC2.36□□□□□ -2.03
LIMS1P48059 MIR196B-201ENST00000384852 84 ntBASIC2.36□□□□□ -2.03
LIMS1P48059 MIR9-1-201ENST00000385198 89 ntBASIC2.36□□□□□ -2.03
LIMS1P48059 SNORA11.4-201ENST00000408823 129 ntBASIC2.36□□□□□ -2.03
LIMS1P48059 RNA5SP181-201ENST00000410246 98 ntBASIC2.36□□□□□ -2.03
LIMS1P48059 MIR1912-201ENST00000410389 80 ntBASIC2.36□□□□□ -2.03
LIMS1P48059 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.36□□□□□ -2.03
LIMS1P48059 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.36□□□□□ -2.03
LIMS1P48059 HSPE1P19-201ENST00000603327 295 ntBASIC2.36□□□□□ -2.03
LIMS1P48059 AL596211.1-201ENST00000569873 2277 ntBASIC2.36□□□□□ -2.03
LIMS1P48059 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
LIMS1P48059 AP006437.1-201ENST00000641440 3685 ntBASIC2.36□□□□□ -2.03
LIMS1P48059 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.35□□□□□ -2.03
LIMS1P48059 Y_RNA.93-201ENST00000363066 109 ntBASIC2.35□□□□□ -2.03
LIMS1P48059 SNORD38C-201ENST00000384381 69 ntBASIC2.35□□□□□ -2.03
LIMS1P48059 RNA5SP144-201ENST00000410846 116 ntBASIC2.35□□□□□ -2.03
LIMS1P48059 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC2.35□□□□□ -2.03
LIMS1P48059 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.35□□□□□ -2.03
LIMS1P48059 AL445687.1-201ENST00000439946 251 ntBASIC2.35□□□□□ -2.03
LIMS1P48059 STAG3L5P-204ENST00000443759 179 ntBASIC2.35□□□□□ -2.03
LIMS1P48059 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.35□□□□□ -2.03
LIMS1P48059 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 211.1 ms