Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 AC100767.1-201ENST00000528178 123 ntBASIC1.27□□□□□ -2.21
MSH2P43246 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.27□□□□□ -2.21
MSH2P43246 MIR4421-201ENST00000578133 69 ntBASIC1.27□□□□□ -2.21
MSH2P43246 AC006006.1-201ENST00000603082 144 ntBASIC1.27□□□□□ -2.21
MSH2P43246 AL022345.2-201ENST00000606307 135 ntBASIC1.27□□□□□ -2.21
MSH2P43246 BX284668.6-201ENST00000606899 438 ntBASIC1.27□□□□□ -2.21
MSH2P43246 Y_RNA.122-201ENST00000363331 96 ntBASIC1.26□□□□□ -2.21
MSH2P43246 SNORA7.1-201ENST00000363750 139 ntBASIC1.26□□□□□ -2.21
MSH2P43246 Y_RNA.562-201ENST00000384695 113 ntBASIC1.26□□□□□ -2.21
MSH2P43246 MIR626-201ENST00000385032 94 ntBASIC1.26□□□□□ -2.21
MSH2P43246 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.26□□□□□ -2.21
MSH2P43246 RPL39P39-201ENST00000455840 151 ntBASIC1.26□□□□□ -2.21
MSH2P43246 RNU6-1132P-201ENST00000459214 107 ntBASIC1.26□□□□□ -2.21
MSH2P43246 Y_RNA.668-201ENST00000516233 93 ntBASIC1.26□□□□□ -2.21
MSH2P43246 SNORD111.1-201ENST00000516421 86 ntBASIC1.26□□□□□ -2.21
MSH2P43246 SNORA74.3-201ENST00000517108 154 ntBASIC1.26□□□□□ -2.21
MSH2P43246 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.26□□□□□ -2.21
MSH2P43246 MIR4643-201ENST00000577473 78 ntBASIC1.26□□□□□ -2.21
MSH2P43246 AL049861.1-201ENST00000603130 150 ntBASIC1.26□□□□□ -2.21
MSH2P43246 AC006441.5-201ENST00000612680 209 ntBASIC1.26□□□□□ -2.21
MSH2P43246 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
MSH2P43246 Y_RNA.24-201ENST00000362508 103 ntBASIC1.25□□□□□ -2.21
MSH2P43246 Y_RNA.572-201ENST00000384757 98 ntBASIC1.25□□□□□ -2.21
MSH2P43246 RNU6-1054P-201ENST00000411293 104 ntBASIC1.25□□□□□ -2.21
MSH2P43246 RNU6-830P-201ENST00000516353 107 ntBASIC1.25□□□□□ -2.21
MSH2P43246 Y_RNA.679-201ENST00000516416 91 ntBASIC1.25□□□□□ -2.21
MSH2P43246 RNU7-149P-201ENST00000516739 59 ntBASIC1.25□□□□□ -2.21
MSH2P43246 SNORA18.7-201ENST00000516910 131 ntBASIC1.25□□□□□ -2.21
MSH2P43246 AL096861.1-201ENST00000610899 123 ntBASIC1.25□□□□□ -2.21
MSH2P43246 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.25□□□□□ -2.21
MSH2P43246 Y_RNA.54-201ENST00000362766 105 ntBASIC1.24□□□□□ -2.21
MSH2P43246 Y_RNA.277-201ENST00000364754 102 ntBASIC1.24□□□□□ -2.21
MSH2P43246 RNU6-1138P-201ENST00000365359 106 ntBASIC1.24□□□□□ -2.21
MSH2P43246 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
MSH2P43246 MIR548H3-201ENST00000408771 118 ntBASIC1.24□□□□□ -2.21
MSH2P43246 AL603825.1-201ENST00000438481 80 ntBASIC1.24□□□□□ -2.21
MSH2P43246 Y_RNA.638-201ENST00000459374 113 ntBASIC1.24□□□□□ -2.21
MSH2P43246 SNORD123-201ENST00000459473 70 ntBASIC1.24□□□□□ -2.21
MSH2P43246 AC004223.1-201ENST00000479840 271 ntBASIC1.24□□□□□ -2.21
MSH2P43246 AC108729.3-201ENST00000513484 108 ntBASIC1.24□□□□□ -2.21
MSH2P43246 SNORA31.2-201ENST00000516019 134 ntBASIC1.24□□□□□ -2.21
MSH2P43246 SNORD77.4-201ENST00000516158 81 ntBASIC1.24□□□□□ -2.21
MSH2P43246 RNA5SP404-201ENST00000517118 132 ntBASIC1.24□□□□□ -2.21
MSH2P43246 SNORA70.22-201ENST00000517160 124 ntBASIC1.24□□□□□ -2.21
MSH2P43246 snoU13.31-201ENST00000607291 104 ntBASIC1.24□□□□□ -2.21
MSH2P43246 AL157834.3-201ENST00000615543 103 ntBASIC1.24□□□□□ -2.21
MSH2P43246 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
MSH2P43246 Y_RNA.229-201ENST00000364347 113 ntBASIC1.23□□□□□ -2.21
MSH2P43246 Y_RNA.304-201ENST00000365011 112 ntBASIC1.23□□□□□ -2.21
MSH2P43246 Y_RNA.338-201ENST00000365320 114 ntBASIC1.23□□□□□ -2.21
MSH2P43246 SNORA40.6-201ENST00000391153 128 ntBASIC1.23□□□□□ -2.21
MSH2P43246 MIR1285-1-201ENST00000408593 84 ntBASIC1.23□□□□□ -2.21
MSH2P43246 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.23□□□□□ -2.21
MSH2P43246 AC048334.1-201ENST00000477975 159 ntBASIC1.23□□□□□ -2.21
MSH2P43246 RN7SKP164-201ENST00000516138 266 ntBASIC1.23□□□□□ -2.21
MSH2P43246 MIR3192-201ENST00000584920 77 ntBASIC1.23□□□□□ -2.21
MSH2P43246 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.23□□□□□ -2.21
MSH2P43246 Pinc.1-201ENST00000616452 154 ntBASIC1.23□□□□□ -2.21
MSH2P43246 U4.1-201ENST00000620349 87 ntBASIC1.23□□□□□ -2.21
MSH2P43246 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.23□□□□□ -2.21
MSH2P43246 Y_RNA.416-201ENST00000384014 113 ntBASIC1.22□□□□□ -2.21
MSH2P43246 RNU6-196P-201ENST00000384315 107 ntBASIC1.22□□□□□ -2.21
MSH2P43246 MIR520C-201ENST00000385005 87 ntBASIC1.22□□□□□ -2.21
MSH2P43246 Y_RNA.587-201ENST00000391210 103 ntBASIC1.22□□□□□ -2.21
MSH2P43246 AC245047.7-201ENST00000440265 293 ntBASIC1.22□□□□□ -2.21
MSH2P43246 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.22□□□□□ -2.21
MSH2P43246 SNORA31.4-201ENST00000516049 129 ntBASIC1.22□□□□□ -2.21
MSH2P43246 RNU7-43P-201ENST00000516554 64 ntBASIC1.22□□□□□ -2.21
MSH2P43246 MIR4764-201ENST00000580680 88 ntBASIC1.22□□□□□ -2.21
MSH2P43246 MIR4503-201ENST00000582187 83 ntBASIC1.22□□□□□ -2.21
MSH2P43246 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.22□□□□□ -2.21
MSH2P43246 AL353770.2-201ENST00000620024 78 ntBASIC1.22□□□□□ -2.21
MSH2P43246 AL365265.1-201ENST00000621045 234 ntBASIC1.22□□□□□ -2.21
MSH2P43246 AC027335.2-201ENST00000624030 375 ntBASIC1.22□□□□□ -2.21
MSH2P43246 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
MSH2P43246 Y_RNA.76-201ENST00000362931 109 ntBASIC1.21□□□□□ -2.22
MSH2P43246 RNU6-910P-201ENST00000390844 107 ntBASIC1.21□□□□□ -2.22
MSH2P43246 snoU13.25-201ENST00000458945 104 ntBASIC1.21□□□□□ -2.22
MSH2P43246 COX6CP14-201ENST00000469580 174 ntBASIC1.21□□□□□ -2.22
MSH2P43246 MIR4662B-201ENST00000579498 81 ntBASIC1.21□□□□□ -2.22
MSH2P43246 MIR3660-201ENST00000584845 100 ntBASIC1.21□□□□□ -2.22
MSH2P43246 AC062037.2-201ENST00000610137 73 ntBASIC1.21□□□□□ -2.22
MSH2P43246 AC015726.2-201ENST00000620112 122 ntBASIC1.21□□□□□ -2.22
MSH2P43246 SNORA70.7-201ENST00000384159 133 ntBASIC1.2□□□□□ -2.22
MSH2P43246 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.2□□□□□ -2.22
MSH2P43246 OR2A41P-201ENST00000473586 105 ntBASIC1.2□□□□□ -2.22
MSH2P43246 RNU7-41P-201ENST00000515917 61 ntBASIC1.2□□□□□ -2.22
MSH2P43246 SNORD116-28-201ENST00000516123 91 ntBASIC1.2□□□□□ -2.22
MSH2P43246 MIR4498-201ENST00000577599 66 ntBASIC1.2□□□□□ -2.22
MSH2P43246 AC011921.3-201ENST00000605540 361 ntBASIC1.2□□□□□ -2.22
MSH2P43246 AL162730.1-201ENST00000605734 292 ntBASIC1.2□□□□□ -2.22
MSH2P43246 AL391903.3-201ENST00000612158 163 ntBASIC1.2□□□□□ -2.22
MSH2P43246 AL442067.1-201ENST00000613261 223 ntBASIC1.2□□□□□ -2.22
MSH2P43246 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.19□□□□□ -2.22
MSH2P43246 RNU6-653P-201ENST00000363074 106 ntBASIC1.19□□□□□ -2.22
MSH2P43246 snoU2_19.4-201ENST00000364329 80 ntBASIC1.19□□□□□ -2.22
MSH2P43246 Y_RNA.292-201ENST00000364904 97 ntBASIC1.19□□□□□ -2.22
MSH2P43246 Y_RNA.350-201ENST00000365409 98 ntBASIC1.19□□□□□ -2.22
MSH2P43246 Y_RNA.452-201ENST00000384202 108 ntBASIC1.19□□□□□ -2.22
MSH2P43246 Y_RNA.486-201ENST00000384398 107 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 172.4 ms