Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RPS26P48-201ENST00000491713 339 ntBASIC2.22□□□□□ -2.05
MSX2P35548 AC026436.1-201ENST00000510537 270 ntBASIC2.22□□□□□ -2.05
MSX2P35548 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.22□□□□□ -2.05
MSX2P35548 MIR4679-2-201ENST00000578358 77 ntBASIC2.22□□□□□ -2.05
MSX2P35548 MIR3945-201ENST00000581853 98 ntBASIC2.22□□□□□ -2.05
MSX2P35548 AC005786.1-201ENST00000588553 154 ntBASIC2.22□□□□□ -2.05
MSX2P35548 MIR6715A-201ENST00000615929 79 ntBASIC2.22□□□□□ -2.05
MSX2P35548 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
MSX2P35548 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
MSX2P35548 AP006437.1-201ENST00000641440 3685 ntBASIC2.22□□□□□ -2.05
MSX2P35548 RNU6-1084P-201ENST00000362498 107 ntBASIC2.21□□□□□ -2.06
MSX2P35548 SNORD115-28-201ENST00000363931 81 ntBASIC2.21□□□□□ -2.06
MSX2P35548 Y_RNA.336-201ENST00000365307 109 ntBASIC2.21□□□□□ -2.06
MSX2P35548 RNU6-1189P-201ENST00000383958 107 ntBASIC2.21□□□□□ -2.06
MSX2P35548 RNA5SP136-201ENST00000410906 107 ntBASIC2.21□□□□□ -2.06
MSX2P35548 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.21□□□□□ -2.06
MSX2P35548 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.21□□□□□ -2.06
MSX2P35548 AC055731.1-201ENST00000474387 401 ntBASIC2.21□□□□□ -2.06
MSX2P35548 RNU7-28P-201ENST00000516759 62 ntBASIC2.21□□□□□ -2.06
MSX2P35548 RNU2-19P-201ENST00000517288 84 ntBASIC2.21□□□□□ -2.06
MSX2P35548 MIR4529-201ENST00000578110 78 ntBASIC2.21□□□□□ -2.06
MSX2P35548 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
MSX2P35548 AL137067.1-201ENST00000615933 120 ntBASIC2.21□□□□□ -2.06
MSX2P35548 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
MSX2P35548 AC008555.8-201ENST00000623602 2168 ntBASIC2.2□□□□□ -2.06
MSX2P35548 SNORD114-30-201ENST00000364448 72 ntBASIC2.2□□□□□ -2.06
MSX2P35548 Y_RNA.265-201ENST00000364677 108 ntBASIC2.2□□□□□ -2.06
MSX2P35548 SNORA2.2-201ENST00000365473 135 ntBASIC2.2□□□□□ -2.06
MSX2P35548 SNORA11.4-201ENST00000408823 129 ntBASIC2.2□□□□□ -2.06
MSX2P35548 BX510359.4-201ENST00000423750 193 ntBASIC2.2□□□□□ -2.06
MSX2P35548 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.2□□□□□ -2.06
MSX2P35548 RNU6-240P-201ENST00000516098 97 ntBASIC2.2□□□□□ -2.06
MSX2P35548 SNORA31.10-201ENST00000516482 106 ntBASIC2.2□□□□□ -2.06
MSX2P35548 SNORD36C-201ENST00000516733 66 ntBASIC2.2□□□□□ -2.06
MSX2P35548 AC084364.2-201ENST00000546924 395 ntBASIC2.2□□□□□ -2.06
MSX2P35548 MIR8054-201ENST00000620877 86 ntBASIC2.2□□□□□ -2.06
MSX2P35548 AC245060.5-201ENST00000610778 3293 ntBASIC2.2□□□□□ -2.06
MSX2P35548 MIRLET7C-201ENST00000362160 84 ntBASIC2.19□□□□□ -2.06
MSX2P35548 RNU6-859P-201ENST00000362728 107 ntBASIC2.19□□□□□ -2.06
MSX2P35548 Y_RNA.281-201ENST00000364774 94 ntBASIC2.19□□□□□ -2.06
MSX2P35548 MIR570-201ENST00000384917 97 ntBASIC2.19□□□□□ -2.06
MSX2P35548 RNU6-440P-201ENST00000390882 105 ntBASIC2.19□□□□□ -2.06
MSX2P35548 MIR1283-2-201ENST00000408621 87 ntBASIC2.19□□□□□ -2.06
MSX2P35548 RNA5SP89-201ENST00000410300 108 ntBASIC2.19□□□□□ -2.06
MSX2P35548 AL445646.1-201ENST00000431784 216 ntBASIC2.19□□□□□ -2.06
MSX2P35548 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.19□□□□□ -2.06
MSX2P35548 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.19□□□□□ -2.06
MSX2P35548 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
MSX2P35548 RNU6-349P-201ENST00000362402 107 ntBASIC2.18□□□□□ -2.06
MSX2P35548 Y_RNA.43-201ENST00000362670 111 ntBASIC2.18□□□□□ -2.06
MSX2P35548 RNU6-1019P-201ENST00000364424 107 ntBASIC2.18□□□□□ -2.06
MSX2P35548 SNORA16B-201ENST00000364674 135 ntBASIC2.18□□□□□ -2.06
MSX2P35548 Y_RNA.440-201ENST00000384120 114 ntBASIC2.18□□□□□ -2.06
MSX2P35548 AL359511.1-201ENST00000402970 211 ntBASIC2.18□□□□□ -2.06
MSX2P35548 STAG3L5P-204ENST00000443759 179 ntBASIC2.18□□□□□ -2.06
MSX2P35548 COX6CP6-201ENST00000490840 228 ntBASIC2.18□□□□□ -2.06
MSX2P35548 RNA5SP170-201ENST00000517150 101 ntBASIC2.18□□□□□ -2.06
MSX2P35548 AC007012.1-201ENST00000567192 175 ntBASIC2.18□□□□□ -2.06
MSX2P35548 AC002984.1-201ENST00000591692 448 ntBASIC2.18□□□□□ -2.06
MSX2P35548 AC069114.2-201ENST00000604699 304 ntBASIC2.18□□□□□ -2.06
MSX2P35548 AC046143.2-201ENST00000609789 160 ntBASIC2.18□□□□□ -2.06
MSX2P35548 MIR6840-201ENST00000611937 71 ntBASIC2.18□□□□□ -2.06
MSX2P35548 uc_338.28-201ENST00000612082 187 ntBASIC2.18□□□□□ -2.06
MSX2P35548 AP000553.5-201ENST00000641933 54 ntBASIC2.18□□□□□ -2.06
MSX2P35548 AL442644.1-201ENST00000454390 3105 ntBASIC2.18□□□□□ -2.06
MSX2P35548 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
MSX2P35548 Y_RNA.116-201ENST00000363292 103 ntBASIC2.17□□□□□ -2.06
MSX2P35548 RNA5SP450-201ENST00000411206 102 ntBASIC2.17□□□□□ -2.06
MSX2P35548 HMGN2P32-201ENST00000444648 269 ntBASIC2.17□□□□□ -2.06
MSX2P35548 AC114811.1-201ENST00000507207 168 ntBASIC2.17□□□□□ -2.06
MSX2P35548 RNU6-168P-201ENST00000516189 101 ntBASIC2.17□□□□□ -2.06
MSX2P35548 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.17□□□□□ -2.06
MSX2P35548 RNU6-1116P-201ENST00000517269 99 ntBASIC2.17□□□□□ -2.06
MSX2P35548 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.17□□□□□ -2.06
MSX2P35548 U4.3-201ENST00000621047 82 ntBASIC2.17□□□□□ -2.06
MSX2P35548 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
MSX2P35548 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.16□□□□□ -2.06
MSX2P35548 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.16□□□□□ -2.06
MSX2P35548 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.16□□□□□ -2.06
MSX2P35548 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
MSX2P35548 MIR450A1-201ENST00000362262 91 ntBASIC2.16□□□□□ -2.06
MSX2P35548 Y_RNA.309-201ENST00000365046 111 ntBASIC2.16□□□□□ -2.06
MSX2P35548 RNU6-106P-201ENST00000384405 107 ntBASIC2.16□□□□□ -2.06
MSX2P35548 Y_RNA.549-201ENST00000384657 102 ntBASIC2.16□□□□□ -2.06
MSX2P35548 MIR597-201ENST00000384968 97 ntBASIC2.16□□□□□ -2.06
MSX2P35548 RNU11-3P-201ENST00000391111 133 ntBASIC2.16□□□□□ -2.06
MSX2P35548 RNA5SP465-201ENST00000391195 109 ntBASIC2.16□□□□□ -2.06
MSX2P35548 MIR1261-201ENST00000408659 82 ntBASIC2.16□□□□□ -2.06
MSX2P35548 HMGN2P3-201ENST00000433603 273 ntBASIC2.16□□□□□ -2.06
MSX2P35548 HMGN2P5-201ENST00000436882 273 ntBASIC2.16□□□□□ -2.06
MSX2P35548 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.16□□□□□ -2.06
MSX2P35548 HSPE1P9-201ENST00000440046 311 ntBASIC2.16□□□□□ -2.06
MSX2P35548 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.16□□□□□ -2.06
MSX2P35548 MIR5094-201ENST00000578766 85 ntBASIC2.16□□□□□ -2.06
MSX2P35548 AC078899.2-201ENST00000595282 212 ntBASIC2.16□□□□□ -2.06
MSX2P35548 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.16□□□□□ -2.06
MSX2P35548 AC015726.2-201ENST00000620112 122 ntBASIC2.16□□□□□ -2.06
MSX2P35548 MIR1291-201ENST00000627649 87 ntBASIC2.16□□□□□ -2.06
MSX2P35548 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
MSX2P35548 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.15□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms