Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RNU6-191P-201ENST00000516295 94 ntBASIC0.56□□□□□ -2.32
SHMT2P34897 RNU7-181P-201ENST00000517234 74 ntBASIC0.56□□□□□ -2.32
SHMT2P34897 MIR4300-201ENST00000581016 96 ntBASIC0.56□□□□□ -2.32
SHMT2P34897 AC025627.3-201ENST00000582078 182 ntBASIC0.56□□□□□ -2.32
SHMT2P34897 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.56□□□□□ -2.32
SHMT2P34897 AL133255.1-201ENST00000606374 441 ntBASIC0.56□□□□□ -2.32
SHMT2P34897 AC015726.2-201ENST00000620112 122 ntBASIC0.56□□□□□ -2.32
SHMT2P34897 Y_RNA.354-201ENST00000365448 111 ntBASIC0.55□□□□□ -2.32
SHMT2P34897 RNU6-110P-201ENST00000384508 104 ntBASIC0.55□□□□□ -2.32
SHMT2P34897 RNU6-1248P-201ENST00000391096 64 ntBASIC0.55□□□□□ -2.32
SHMT2P34897 MIR1827-201ENST00000408549 66 ntBASIC0.55□□□□□ -2.32
SHMT2P34897 AC005534.2-201ENST00000431047 433 ntBASIC0.55□□□□□ -2.32
SHMT2P34897 MTND4P19-201ENST00000446659 478 ntBASIC0.55□□□□□ -2.32
SHMT2P34897 AC067940.1-201ENST00000458411 300 ntBASIC0.55□□□□□ -2.32
SHMT2P34897 MIR2115-201ENST00000516657 100 ntBASIC0.55□□□□□ -2.32
SHMT2P34897 MIR548AO-201ENST00000579992 96 ntBASIC0.55□□□□□ -2.32
SHMT2P34897 Y_RNA.804-201ENST00000615262 101 ntBASIC0.55□□□□□ -2.32
SHMT2P34897 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.54□□□□□ -2.32
SHMT2P34897 RNA5SP347-201ENST00000362445 119 ntBASIC0.54□□□□□ -2.32
SHMT2P34897 Y_RNA.136-201ENST00000363444 102 ntBASIC0.54□□□□□ -2.32
SHMT2P34897 SNORD113-8-201ENST00000363497 74 ntBASIC0.54□□□□□ -2.32
SHMT2P34897 SNORA51.10-201ENST00000384418 136 ntBASIC0.54□□□□□ -2.32
SHMT2P34897 SNORA2B-201ENST00000384583 137 ntBASIC0.54□□□□□ -2.32
SHMT2P34897 Y_RNA.537-201ENST00000384626 109 ntBASIC0.54□□□□□ -2.32
SHMT2P34897 HSPE1P25-201ENST00000455484 251 ntBASIC0.54□□□□□ -2.32
SHMT2P34897 RNU2-13P-201ENST00000515909 113 ntBASIC0.54□□□□□ -2.32
SHMT2P34897 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.54□□□□□ -2.32
SHMT2P34897 AC012433.1-201ENST00000588916 398 ntBASIC0.54□□□□□ -2.32
SHMT2P34897 AC104695.3-201ENST00000604052 296 ntBASIC0.54□□□□□ -2.32
SHMT2P34897 MIR376A1-201ENST00000616574 68 ntBASIC0.54□□□□□ -2.32
SHMT2P34897 uc_338.17-201ENST00000619633 179 ntBASIC0.54□□□□□ -2.32
SHMT2P34897 Y_RNA.168-201ENST00000363740 102 ntBASIC0.53□□□□□ -2.32
SHMT2P34897 MT-TD-201ENST00000387419 68 ntBASIC0.53□□□□□ -2.32
SHMT2P34897 RNU6-763P-201ENST00000390865 106 ntBASIC0.53□□□□□ -2.32
SHMT2P34897 RNU6-308P-201ENST00000390957 107 ntBASIC0.53□□□□□ -2.32
SHMT2P34897 AC244098.3-201ENST00000424803 96 ntBASIC0.53□□□□□ -2.32
SHMT2P34897 AL157398.1-201ENST00000452981 186 ntBASIC0.53□□□□□ -2.32
SHMT2P34897 RNU6-496P-201ENST00000516145 99 ntBASIC0.53□□□□□ -2.32
SHMT2P34897 RNU6-764P-201ENST00000516396 105 ntBASIC0.53□□□□□ -2.32
SHMT2P34897 Y_RNA.715-201ENST00000517082 110 ntBASIC0.53□□□□□ -2.32
SHMT2P34897 RAC1P9-201ENST00000604990 392 ntBASIC0.53□□□□□ -2.32
SHMT2P34897 LARP7P1-201ENST00000605576 316 ntBASIC0.53□□□□□ -2.32
SHMT2P34897 MIR4791-201ENST00000607666 84 ntBASIC0.53□□□□□ -2.32
SHMT2P34897 MTND1P7-201ENST00000632801 297 ntBASIC0.53□□□□□ -2.32
SHMT2P34897 MIR377-201ENST00000362145 69 ntBASIC0.52□□□□□ -2.33
SHMT2P34897 RNU6-899P-201ENST00000363947 107 ntBASIC0.52□□□□□ -2.33
SHMT2P34897 SNORD42.2-201ENST00000365570 69 ntBASIC0.52□□□□□ -2.33
SHMT2P34897 Y_RNA.445-201ENST00000384168 102 ntBASIC0.52□□□□□ -2.33
SHMT2P34897 Y_RNA.645-201ENST00000391229 102 ntBASIC0.52□□□□□ -2.33
SHMT2P34897 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.52□□□□□ -2.33
SHMT2P34897 Y_RNA.639-201ENST00000458981 102 ntBASIC0.52□□□□□ -2.33
SHMT2P34897 RNU6-397P-201ENST00000516226 104 ntBASIC0.52□□□□□ -2.33
SHMT2P34897 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.52□□□□□ -2.33
SHMT2P34897 C8orf59P2-201ENST00000603441 271 ntBASIC0.52□□□□□ -2.33
SHMT2P34897 AL021707.8-201ENST00000609428 183 ntBASIC0.52□□□□□ -2.33
SHMT2P34897 AL136317.1-201ENST00000612653 226 ntBASIC0.52□□□□□ -2.33
SHMT2P34897 MIR6513-201ENST00000621188 64 ntBASIC0.52□□□□□ -2.33
SHMT2P34897 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.51□□□□□ -2.33
SHMT2P34897 MIR369-201ENST00000362155 70 ntBASIC0.51□□□□□ -2.33
SHMT2P34897 RNU6-369P-201ENST00000362515 102 ntBASIC0.51□□□□□ -2.33
SHMT2P34897 SNORD45.3-201ENST00000363836 72 ntBASIC0.51□□□□□ -2.33
SHMT2P34897 Y_RNA.242-201ENST00000364473 110 ntBASIC0.51□□□□□ -2.33
SHMT2P34897 SNORA1.2-201ENST00000365189 134 ntBASIC0.51□□□□□ -2.33
SHMT2P34897 RNU6-396P-201ENST00000365369 105 ntBASIC0.51□□□□□ -2.33
SHMT2P34897 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.51□□□□□ -2.33
SHMT2P34897 Y_RNA.424-201ENST00000384063 103 ntBASIC0.51□□□□□ -2.33
SHMT2P34897 RNU6-1067P-201ENST00000384752 107 ntBASIC0.51□□□□□ -2.33
SHMT2P34897 SNORD105-201ENST00000386910 85 ntBASIC0.51□□□□□ -2.33
SHMT2P34897 MT-TN-201ENST00000387400 73 ntBASIC0.51□□□□□ -2.33
SHMT2P34897 SNORD115-46-201ENST00000390982 71 ntBASIC0.51□□□□□ -2.33
SHMT2P34897 Y_RNA.602-201ENST00000410535 92 ntBASIC0.51□□□□□ -2.33
SHMT2P34897 MTCO1P5-201ENST00000433573 344 ntBASIC0.51□□□□□ -2.33
SHMT2P34897 RNU6-1170P-201ENST00000515974 106 ntBASIC0.51□□□□□ -2.33
SHMT2P34897 RNU7-25P-201ENST00000516544 62 ntBASIC0.51□□□□□ -2.33
SHMT2P34897 RNU6-1007P-201ENST00000516586 107 ntBASIC0.51□□□□□ -2.33
SHMT2P34897 AL512605.2-201ENST00000592972 256 ntBASIC0.51□□□□□ -2.33
SHMT2P34897 AC090574.1-201ENST00000623186 233 ntBASIC0.51□□□□□ -2.33
SHMT2P34897 AC022140.2-201ENST00000623500 188 ntBASIC0.51□□□□□ -2.33
SHMT2P34897 Y_RNA.31-201ENST00000362574 102 ntBASIC0.5□□□□□ -2.33
SHMT2P34897 Y_RNA.183-201ENST00000363882 113 ntBASIC0.5□□□□□ -2.33
SHMT2P34897 SNORA63.7-201ENST00000365579 123 ntBASIC0.5□□□□□ -2.33
SHMT2P34897 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.5□□□□□ -2.33
SHMT2P34897 RNU1-119P-201ENST00000391122 165 ntBASIC0.5□□□□□ -2.33
SHMT2P34897 RNU6-847P-201ENST00000411115 108 ntBASIC0.5□□□□□ -2.33
SHMT2P34897 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.5□□□□□ -2.33
SHMT2P34897 AC092628.1-201ENST00000436250 252 ntBASIC0.5□□□□□ -2.33
SHMT2P34897 MRPS35P2-201ENST00000508242 191 ntBASIC0.5□□□□□ -2.33
SHMT2P34897 RNA5SP121-201ENST00000516537 101 ntBASIC0.5□□□□□ -2.33
SHMT2P34897 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.5□□□□□ -2.33
SHMT2P34897 AC124312.5-201ENST00000604451 268 ntBASIC0.5□□□□□ -2.33
SHMT2P34897 MIR6515-201ENST00000619843 57 ntBASIC0.5□□□□□ -2.33
SHMT2P34897 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.49□□□□□ -2.33
SHMT2P34897 RNU4-90P-201ENST00000362773 141 ntBASIC0.49□□□□□ -2.33
SHMT2P34897 Y_RNA.105-201ENST00000363182 111 ntBASIC0.49□□□□□ -2.33
SHMT2P34897 RNU6-1205P-201ENST00000363625 106 ntBASIC0.49□□□□□ -2.33
SHMT2P34897 RNA5SP499-201ENST00000363982 119 ntBASIC0.49□□□□□ -2.33
SHMT2P34897 RNU6-450P-201ENST00000364654 107 ntBASIC0.49□□□□□ -2.33
SHMT2P34897 RNU6-580P-201ENST00000365159 107 ntBASIC0.49□□□□□ -2.33
SHMT2P34897 Y_RNA.419-201ENST00000384041 102 ntBASIC0.49□□□□□ -2.33
SHMT2P34897 Y_RNA.547-201ENST00000384654 119 ntBASIC0.49□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 179.7 ms