Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 Y_RNA.274-201ENST00000364714 101 ntBASIC1.38□□□□□ -2.19
MSH3P20585 RNU6-200P-201ENST00000364743 107 ntBASIC1.38□□□□□ -2.19
MSH3P20585 Y_RNA.336-201ENST00000365307 109 ntBASIC1.38□□□□□ -2.19
MSH3P20585 RNU6-1138P-201ENST00000365359 106 ntBASIC1.38□□□□□ -2.19
MSH3P20585 RNY3P5-201ENST00000384127 102 ntBASIC1.38□□□□□ -2.19
MSH3P20585 MIR513A1-201ENST00000385138 129 ntBASIC1.38□□□□□ -2.19
MSH3P20585 MT-TT-201ENST00000387460 66 ntBASIC1.38□□□□□ -2.19
MSH3P20585 SNORD72-201ENST00000390994 80 ntBASIC1.38□□□□□ -2.19
MSH3P20585 Y_RNA.587-201ENST00000391210 103 ntBASIC1.38□□□□□ -2.19
MSH3P20585 RNU6-237P-201ENST00000515985 71 ntBASIC1.38□□□□□ -2.19
MSH3P20585 SNORD77.4-201ENST00000516158 81 ntBASIC1.38□□□□□ -2.19
MSH3P20585 RNA5SP458-201ENST00000516188 119 ntBASIC1.38□□□□□ -2.19
MSH3P20585 RNU7-149P-201ENST00000516739 59 ntBASIC1.38□□□□□ -2.19
MSH3P20585 DNAJC19P9-201ENST00000555084 351 ntBASIC1.38□□□□□ -2.19
MSH3P20585 MIR3124-201ENST00000582636 67 ntBASIC1.38□□□□□ -2.19
MSH3P20585 AL391903.3-201ENST00000612158 163 ntBASIC1.38□□□□□ -2.19
MSH3P20585 MIR7974-201ENST00000615835 79 ntBASIC1.38□□□□□ -2.19
MSH3P20585 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
MSH3P20585 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
MSH3P20585 RNU6-199P-201ENST00000362954 107 ntBASIC1.37□□□□□ -2.19
MSH3P20585 RNU6-103P-201ENST00000363686 107 ntBASIC1.37□□□□□ -2.19
MSH3P20585 SNORD14E-201ENST00000364009 85 ntBASIC1.37□□□□□ -2.19
MSH3P20585 Y_RNA.297-201ENST00000364950 91 ntBASIC1.37□□□□□ -2.19
MSH3P20585 SNORD1A-201ENST00000364968 72 ntBASIC1.37□□□□□ -2.19
MSH3P20585 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.37□□□□□ -2.19
MSH3P20585 RNU6-1228P-201ENST00000391014 107 ntBASIC1.37□□□□□ -2.19
MSH3P20585 RNU6-918P-201ENST00000391219 106 ntBASIC1.37□□□□□ -2.19
MSH3P20585 SNRPGP14-201ENST00000435400 219 ntBASIC1.37□□□□□ -2.19
MSH3P20585 HMGN2P32-201ENST00000444648 269 ntBASIC1.37□□□□□ -2.19
MSH3P20585 AC009474.2-201ENST00000451383 136 ntBASIC1.37□□□□□ -2.19
MSH3P20585 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.37□□□□□ -2.19
MSH3P20585 MIR8063-201ENST00000621930 81 ntBASIC1.37□□□□□ -2.19
MSH3P20585 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.37□□□□□ -2.19
MSH3P20585 MIR378A-201ENST00000362177 66 ntBASIC1.36□□□□□ -2.19
MSH3P20585 Y_RNA.7-201ENST00000362352 102 ntBASIC1.36□□□□□ -2.19
MSH3P20585 Y_RNA.121-201ENST00000363309 113 ntBASIC1.36□□□□□ -2.19
MSH3P20585 RNA5SP259-201ENST00000365541 109 ntBASIC1.36□□□□□ -2.19
MSH3P20585 AL606845.1-201ENST00000404881 255 ntBASIC1.36□□□□□ -2.19
MSH3P20585 RNU2-55P-201ENST00000411146 174 ntBASIC1.36□□□□□ -2.19
MSH3P20585 SNRPGP8-201ENST00000454064 226 ntBASIC1.36□□□□□ -2.19
MSH3P20585 RNU7-95P-201ENST00000459222 64 ntBASIC1.36□□□□□ -2.19
MSH3P20585 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.36□□□□□ -2.19
MSH3P20585 RNA5SP61-201ENST00000516453 100 ntBASIC1.36□□□□□ -2.19
MSH3P20585 AL160236.1-201ENST00000556317 195 ntBASIC1.36□□□□□ -2.19
MSH3P20585 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.36□□□□□ -2.19
MSH3P20585 Z83818.1-201ENST00000603584 150 ntBASIC1.36□□□□□ -2.19
MSH3P20585 Pinc.1-201ENST00000616452 154 ntBASIC1.36□□□□□ -2.19
MSH3P20585 Y_RNA.238-201ENST00000364441 102 ntBASIC1.35□□□□□ -2.19
MSH3P20585 Y_RNA.242-201ENST00000364473 110 ntBASIC1.35□□□□□ -2.19
MSH3P20585 RNU6-1318P-201ENST00000365389 103 ntBASIC1.35□□□□□ -2.19
MSH3P20585 RNU6-47P-201ENST00000383866 107 ntBASIC1.35□□□□□ -2.19
MSH3P20585 RNU6-442P-201ENST00000383968 104 ntBASIC1.35□□□□□ -2.19
MSH3P20585 Y_RNA.435-201ENST00000384095 112 ntBASIC1.35□□□□□ -2.19
MSH3P20585 Y_RNA.571-201ENST00000384753 98 ntBASIC1.35□□□□□ -2.19
MSH3P20585 MIR452-201ENST00000385020 85 ntBASIC1.35□□□□□ -2.19
MSH3P20585 MIR653-201ENST00000385279 96 ntBASIC1.35□□□□□ -2.19
MSH3P20585 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.35□□□□□ -2.19
MSH3P20585 BTF3P4-201ENST00000418852 495 ntBASIC1.35□□□□□ -2.19
MSH3P20585 AC245517.4-201ENST00000448601 281 ntBASIC1.35□□□□□ -2.19
MSH3P20585 RPS29P23-201ENST00000458635 123 ntBASIC1.35□□□□□ -2.19
MSH3P20585 Y_RNA.644-201ENST00000459006 113 ntBASIC1.35□□□□□ -2.19
MSH3P20585 RNA5SP445-201ENST00000515889 115 ntBASIC1.35□□□□□ -2.19
MSH3P20585 RNU6-138P-201ENST00000515952 107 ntBASIC1.35□□□□□ -2.19
MSH3P20585 Y_RNA.674-201ENST00000516362 113 ntBASIC1.35□□□□□ -2.19
MSH3P20585 MIR4421-201ENST00000578133 69 ntBASIC1.35□□□□□ -2.19
MSH3P20585 MIR4662B-201ENST00000579498 81 ntBASIC1.35□□□□□ -2.19
MSH3P20585 MIR4744-201ENST00000581563 82 ntBASIC1.35□□□□□ -2.19
MSH3P20585 RNU2-4P-201ENST00000606190 192 ntBASIC1.35□□□□□ -2.19
MSH3P20585 AC090425.1-201ENST00000610007 140 ntBASIC1.35□□□□□ -2.19
MSH3P20585 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.35□□□□□ -2.19
MSH3P20585 AC106754.2-201ENST00000623006 233 ntBASIC1.35□□□□□ -2.19
MSH3P20585 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.35□□□□□ -2.19
MSH3P20585 AL442644.1-201ENST00000454390 3105 ntBASIC1.34□□□□□ -2.19
MSH3P20585 RNU6-268P-201ENST00000364174 107 ntBASIC1.34□□□□□ -2.19
MSH3P20585 Y_RNA.486-201ENST00000384398 107 ntBASIC1.34□□□□□ -2.19
MSH3P20585 MIR526A1-201ENST00000384897 85 ntBASIC1.34□□□□□ -2.19
MSH3P20585 MIR758-201ENST00000390227 88 ntBASIC1.34□□□□□ -2.19
MSH3P20585 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.34□□□□□ -2.19
MSH3P20585 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.34□□□□□ -2.19
MSH3P20585 AC092991.1-201ENST00000477176 376 ntBASIC1.34□□□□□ -2.19
MSH3P20585 RNU6-917P-201ENST00000516294 104 ntBASIC1.34□□□□□ -2.19
MSH3P20585 Y_RNA.700-201ENST00000516806 100 ntBASIC1.34□□□□□ -2.19
MSH3P20585 RNU6-794P-201ENST00000517261 64 ntBASIC1.34□□□□□ -2.19
MSH3P20585 AC006441.5-201ENST00000612680 209 ntBASIC1.34□□□□□ -2.19
MSH3P20585 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.34□□□□□ -2.2
MSH3P20585 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.33□□□□□ -2.2
MSH3P20585 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
MSH3P20585 SNORD33-201ENST00000362761 85 ntBASIC1.33□□□□□ -2.2
MSH3P20585 RNU6-1020P-201ENST00000363684 107 ntBASIC1.33□□□□□ -2.2
MSH3P20585 SNORA7.1-201ENST00000363750 139 ntBASIC1.33□□□□□ -2.2
MSH3P20585 SNORA2.2-201ENST00000365473 135 ntBASIC1.33□□□□□ -2.2
MSH3P20585 RNU6-484P-201ENST00000384016 107 ntBASIC1.33□□□□□ -2.2
MSH3P20585 MIR802-201ENST00000390235 94 ntBASIC1.33□□□□□ -2.2
MSH3P20585 RNU6-578P-201ENST00000390980 103 ntBASIC1.33□□□□□ -2.2
MSH3P20585 AP1B1P2-201ENST00000416196 106 ntBASIC1.33□□□□□ -2.2
MSH3P20585 AC108059.2-201ENST00000434626 151 ntBASIC1.33□□□□□ -2.2
MSH3P20585 AC015922.2-201ENST00000435593 184 ntBASIC1.33□□□□□ -2.2
MSH3P20585 AC027119.1-201ENST00000440877 241 ntBASIC1.33□□□□□ -2.2
MSH3P20585 AL138752.1-201ENST00000452964 351 ntBASIC1.33□□□□□ -2.2
MSH3P20585 AC079140.2-201ENST00000506193 142 ntBASIC1.33□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 168 ms