Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 RNU1-51P-201ENST00000365345 176 ntBASIC2.82□□□□□ -1.96
LIG1P18858 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.82□□□□□ -1.96
LIG1P18858 AC245047.3-201ENST00000429428 127 ntBASIC2.82□□□□□ -1.96
LIG1P18858 AL445646.1-201ENST00000431784 216 ntBASIC2.82□□□□□ -1.96
LIG1P18858 AL606517.2-201ENST00000442855 241 ntBASIC2.82□□□□□ -1.96
LIG1P18858 SNORA72.7-201ENST00000516349 94 ntBASIC2.82□□□□□ -1.96
LIG1P18858 MIR5582-201ENST00000579697 68 ntBASIC2.82□□□□□ -1.96
LIG1P18858 MIR3162-201ENST00000581818 82 ntBASIC2.82□□□□□ -1.96
LIG1P18858 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.82□□□□□ -1.96
LIG1P18858 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.82□□□□□ -1.96
LIG1P18858 AC106754.2-201ENST00000623006 233 ntBASIC2.82□□□□□ -1.96
LIG1P18858 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
LIG1P18858 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
LIG1P18858 RNU6-766P-201ENST00000362478 107 ntBASIC2.81□□□□□ -1.96
LIG1P18858 RNU6-23P-201ENST00000363283 107 ntBASIC2.81□□□□□ -1.96
LIG1P18858 RNA5SP456-201ENST00000364002 114 ntBASIC2.81□□□□□ -1.96
LIG1P18858 Y_RNA.440-201ENST00000384120 114 ntBASIC2.81□□□□□ -1.96
LIG1P18858 Y_RNA.549-201ENST00000384657 102 ntBASIC2.81□□□□□ -1.96
LIG1P18858 RNU6-938P-201ENST00000411285 103 ntBASIC2.81□□□□□ -1.96
LIG1P18858 HMGN2P32-201ENST00000444648 269 ntBASIC2.81□□□□□ -1.96
LIG1P18858 AC087499.4-201ENST00000448505 178 ntBASIC2.81□□□□□ -1.96
LIG1P18858 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.81□□□□□ -1.96
LIG1P18858 Y_RNA.677-201ENST00000516401 85 ntBASIC2.81□□□□□ -1.96
LIG1P18858 AC026271.5-201ENST00000577873 130 ntBASIC2.81□□□□□ -1.96
LIG1P18858 MIR4298-201ENST00000584380 73 ntBASIC2.81□□□□□ -1.96
LIG1P18858 RNU6-94P-201ENST00000607728 107 ntBASIC2.81□□□□□ -1.96
LIG1P18858 AC009831.4-201ENST00000620744 325 ntBASIC2.81□□□□□ -1.96
LIG1P18858 AC022513.1-201ENST00000624512 117 ntBASIC2.81□□□□□ -1.96
LIG1P18858 AL596028.1-201ENST00000326971 197 ntBASIC2.8□□□□□ -1.96
LIG1P18858 RNY4P6-201ENST00000363667 96 ntBASIC2.8□□□□□ -1.96
LIG1P18858 Y_RNA.265-201ENST00000364677 108 ntBASIC2.8□□□□□ -1.96
LIG1P18858 Y_RNA.369-201ENST00000365568 117 ntBASIC2.8□□□□□ -1.96
LIG1P18858 SNORA11.4-201ENST00000408823 129 ntBASIC2.8□□□□□ -1.96
LIG1P18858 RNA5SP320-201ENST00000516263 124 ntBASIC2.8□□□□□ -1.96
LIG1P18858 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
LIG1P18858 Y_RNA.49-201ENST00000362714 112 ntBASIC2.79□□□□□ -1.96
LIG1P18858 Y_RNA.163-201ENST00000363702 113 ntBASIC2.79□□□□□ -1.96
LIG1P18858 RNU6-690P-201ENST00000365242 106 ntBASIC2.79□□□□□ -1.96
LIG1P18858 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC2.79□□□□□ -1.96
LIG1P18858 RNY4P20-201ENST00000516678 93 ntBASIC2.79□□□□□ -1.96
LIG1P18858 SNORD36C-201ENST00000516733 66 ntBASIC2.79□□□□□ -1.96
LIG1P18858 RNU7-70P-201ENST00000516941 66 ntBASIC2.79□□□□□ -1.96
LIG1P18858 RNU6-537P-201ENST00000517277 103 ntBASIC2.79□□□□□ -1.96
LIG1P18858 AC005786.1-201ENST00000588553 154 ntBASIC2.79□□□□□ -1.96
LIG1P18858 MIR6840-201ENST00000611937 71 ntBASIC2.79□□□□□ -1.96
LIG1P18858 AL589743.1-201ENST00000551932 2712 ntBASIC2.78□□□□□ -1.96
LIG1P18858 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
LIG1P18858 Y_RNA.213-201ENST00000364178 111 ntBASIC2.78□□□□□ -1.96
LIG1P18858 Y_RNA.323-201ENST00000365157 109 ntBASIC2.78□□□□□ -1.96
LIG1P18858 Y_RNA.328-201ENST00000365208 113 ntBASIC2.78□□□□□ -1.96
LIG1P18858 RNY1P6-201ENST00000384193 109 ntBASIC2.78□□□□□ -1.96
LIG1P18858 MIR29C-201ENST00000385231 88 ntBASIC2.78□□□□□ -1.96
LIG1P18858 MIR1302-5-201ENST00000408164 150 ntBASIC2.78□□□□□ -1.96
LIG1P18858 AP003484.1-201ENST00000530974 250 ntBASIC2.78□□□□□ -1.96
LIG1P18858 AC078899.2-201ENST00000595282 212 ntBASIC2.78□□□□□ -1.96
LIG1P18858 MIR8054-201ENST00000620877 86 ntBASIC2.78□□□□□ -1.96
LIG1P18858 AC245060.5-201ENST00000610778 3293 ntBASIC2.77□□□□□ -1.97
LIG1P18858 RNU4-82P-201ENST00000362443 140 ntBASIC2.77□□□□□ -1.97
LIG1P18858 RNU1-133P-201ENST00000364867 167 ntBASIC2.77□□□□□ -1.97
LIG1P18858 RNU6-1014P-201ENST00000383940 103 ntBASIC2.77□□□□□ -1.97
LIG1P18858 MIR759-201ENST00000390224 91 ntBASIC2.77□□□□□ -1.97
LIG1P18858 RNU6-440P-201ENST00000390882 105 ntBASIC2.77□□□□□ -1.97
LIG1P18858 RNA5SP109-201ENST00000391010 116 ntBASIC2.77□□□□□ -1.97
LIG1P18858 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.77□□□□□ -1.97
LIG1P18858 RNU7-80P-201ENST00000459562 61 ntBASIC2.77□□□□□ -1.97
LIG1P18858 SNORA28-201ENST00000606769 126 ntBASIC2.77□□□□□ -1.97
LIG1P18858 AL035470.1-201ENST00000622571 220 ntBASIC2.77□□□□□ -1.97
LIG1P18858 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.77□□□□□ -1.97
LIG1P18858 RNU1-58P-201ENST00000362413 163 ntBASIC2.76□□□□□ -1.97
LIG1P18858 RNU6-1019P-201ENST00000364424 107 ntBASIC2.76□□□□□ -1.97
LIG1P18858 SNORD114-30-201ENST00000364448 72 ntBASIC2.76□□□□□ -1.97
LIG1P18858 SNORA16B-201ENST00000364674 135 ntBASIC2.76□□□□□ -1.97
LIG1P18858 Y_RNA.298-201ENST00000364960 107 ntBASIC2.76□□□□□ -1.97
LIG1P18858 RNU6-756P-201ENST00000383997 107 ntBASIC2.76□□□□□ -1.97
LIG1P18858 AL627390.1-201ENST00000396055 340 ntBASIC2.76□□□□□ -1.97
LIG1P18858 MIR4778-201ENST00000577635 80 ntBASIC2.76□□□□□ -1.97
LIG1P18858 MIR4529-201ENST00000578110 78 ntBASIC2.76□□□□□ -1.97
LIG1P18858 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC2.76□□□□□ -1.97
LIG1P18858 AC021443.1-201ENST00000604478 211 ntBASIC2.76□□□□□ -1.97
LIG1P18858 AC027279.3-201ENST00000625055 122 ntBASIC2.76□□□□□ -1.97
LIG1P18858 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
LIG1P18858 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
LIG1P18858 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.76□□□□□ -1.97
LIG1P18858 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.75□□□□□ -1.97
LIG1P18858 MIRLET7C-201ENST00000362160 84 ntBASIC2.75□□□□□ -1.97
LIG1P18858 Y_RNA.348-201ENST00000365403 103 ntBASIC2.75□□□□□ -1.97
LIG1P18858 Y_RNA.351-201ENST00000365436 96 ntBASIC2.75□□□□□ -1.97
LIG1P18858 Y_RNA.362-201ENST00000365518 110 ntBASIC2.75□□□□□ -1.97
LIG1P18858 Y_RNA.454-201ENST00000384224 113 ntBASIC2.75□□□□□ -1.97
LIG1P18858 MIR27B-201ENST00000385129 97 ntBASIC2.75□□□□□ -1.97
LIG1P18858 RPL39P34-201ENST00000477141 156 ntBASIC2.75□□□□□ -1.97
LIG1P18858 SNORA18.7-201ENST00000516910 131 ntBASIC2.75□□□□□ -1.97
LIG1P18858 SNORA31.25-201ENST00000517242 134 ntBASIC2.75□□□□□ -1.97
LIG1P18858 AC084364.2-201ENST00000546924 395 ntBASIC2.75□□□□□ -1.97
LIG1P18858 AC015726.2-201ENST00000620112 122 ntBASIC2.75□□□□□ -1.97
LIG1P18858 AL442644.1-201ENST00000454390 3105 ntBASIC2.75□□□□□ -1.97
LIG1P18858 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
LIG1P18858 SNORA63.5-201ENST00000363548 123 ntBASIC2.74□□□□□ -1.97
LIG1P18858 SNORA51.5-201ENST00000384126 131 ntBASIC2.74□□□□□ -1.97
LIG1P18858 RNU6-905P-201ENST00000384434 107 ntBASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms