Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 RNU6-1007P-201ENST00000516586 107 ntBASIC0.2□□□□□ -2.38
MT-ND4P03905 Y_RNA.718-201ENST00000517110 102 ntBASIC0.2□□□□□ -2.38
MT-ND4P03905 SNORD116.3-201ENST00000517176 78 ntBASIC0.2□□□□□ -2.38
MT-ND4P03905 AC104985.2-201ENST00000620598 500 ntBASIC0.2□□□□□ -2.38
MT-ND4P03905 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.2□□□□□ -2.38
MT-ND4P03905 AC092634.7-201ENST00000621022 103 ntBASIC0.2□□□□□ -2.38
MT-ND4P03905 MIR103A1-201ENST00000362165 78 ntBASIC0.19□□□□□ -2.38
MT-ND4P03905 RNU4-80P-201ENST00000363200 141 ntBASIC0.19□□□□□ -2.38
MT-ND4P03905 Y_RNA.383-201ENST00000383855 97 ntBASIC0.19□□□□□ -2.38
MT-ND4P03905 SNORA24-201ENST00000384096 131 ntBASIC0.19□□□□□ -2.38
MT-ND4P03905 SNORD63-201ENST00000384262 68 ntBASIC0.19□□□□□ -2.38
MT-ND4P03905 RNU6-679P-201ENST00000391003 106 ntBASIC0.19□□□□□ -2.38
MT-ND4P03905 RNU6ATAC25P-201ENST00000408798 117 ntBASIC0.19□□□□□ -2.38
MT-ND4P03905 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.19□□□□□ -2.38
MT-ND4P03905 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.19□□□□□ -2.38
MT-ND4P03905 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.19□□□□□ -2.38
MT-ND4P03905 RNU6-1132P-201ENST00000459214 107 ntBASIC0.19□□□□□ -2.38
MT-ND4P03905 snoU13.16-201ENST00000459350 104 ntBASIC0.19□□□□□ -2.38
MT-ND4P03905 AC108740.1-201ENST00000498629 225 ntBASIC0.19□□□□□ -2.38
MT-ND4P03905 AL078603.1-201ENST00000603824 313 ntBASIC0.19□□□□□ -2.38
MT-ND4P03905 AL121655.1-201ENST00000605811 308 ntBASIC0.19□□□□□ -2.38
MT-ND4P03905 AC084781.2-201ENST00000615568 161 ntBASIC0.19□□□□□ -2.38
MT-ND4P03905 U6atac.1-201ENST00000616025 117 ntBASIC0.19□□□□□ -2.38
MT-ND4P03905 AC090625.1-201ENST00000357130 210 ntBASIC0.18□□□□□ -2.38
MT-ND4P03905 Y_RNA.143-201ENST00000363520 106 ntBASIC0.18□□□□□ -2.38
MT-ND4P03905 Y_RNA.242-201ENST00000364473 110 ntBASIC0.18□□□□□ -2.38
MT-ND4P03905 Y_RNA.813-201ENST00000364639 102 ntBASIC0.18□□□□□ -2.38
MT-ND4P03905 Y_RNA.286-201ENST00000364813 102 ntBASIC0.18□□□□□ -2.38
MT-ND4P03905 RNU6-21P-201ENST00000384710 107 ntBASIC0.18□□□□□ -2.38
MT-ND4P03905 AC236972.2-201ENST00000434979 310 ntBASIC0.18□□□□□ -2.38
MT-ND4P03905 AC098614.3-201ENST00000438957 440 ntBASIC0.18□□□□□ -2.38
MT-ND4P03905 RNU4-77P-201ENST00000516692 156 ntBASIC0.18□□□□□ -2.38
MT-ND4P03905 RPS29P30-201ENST00000600975 111 ntBASIC0.18□□□□□ -2.38
MT-ND4P03905 AC092447.9-201ENST00000603395 144 ntBASIC0.18□□□□□ -2.38
MT-ND4P03905 AC134878.1-201ENST00000619901 243 ntBASIC0.18□□□□□ -2.38
MT-ND4P03905 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.17□□□□□ -2.38
MT-ND4P03905 RNU6-1115P-201ENST00000362490 106 ntBASIC0.17□□□□□ -2.38
MT-ND4P03905 RNA5SP517-201ENST00000364724 117 ntBASIC0.17□□□□□ -2.38
MT-ND4P03905 RNU6-1327P-201ENST00000365302 105 ntBASIC0.17□□□□□ -2.38
MT-ND4P03905 Y_RNA.439-201ENST00000384119 94 ntBASIC0.17□□□□□ -2.38
MT-ND4P03905 MIR548O-201ENST00000408583 114 ntBASIC0.17□□□□□ -2.38
MT-ND4P03905 RNU7-67P-201ENST00000459003 62 ntBASIC0.17□□□□□ -2.38
MT-ND4P03905 SNORA18.4-201ENST00000516440 124 ntBASIC0.17□□□□□ -2.38
MT-ND4P03905 MIR6740-201ENST00000618268 113 ntBASIC0.17□□□□□ -2.38
MT-ND4P03905 AC022140.2-201ENST00000623500 188 ntBASIC0.17□□□□□ -2.38
MT-ND4P03905 AC010332.2-201ENST00000613083 1904 ntBASIC0.17□□□□□ -2.38
MT-ND4P03905 RNU6-349P-201ENST00000362402 107 ntBASIC0.16□□□□□ -2.38
MT-ND4P03905 Y_RNA.80-201ENST00000362996 102 ntBASIC0.16□□□□□ -2.38
MT-ND4P03905 SNORD44.1-201ENST00000363202 61 ntBASIC0.16□□□□□ -2.38
MT-ND4P03905 Y_RNA.241-201ENST00000364470 117 ntBASIC0.16□□□□□ -2.38
MT-ND4P03905 RNY3-201ENST00000365484 102 ntBASIC0.16□□□□□ -2.38
MT-ND4P03905 Y_RNA.485-201ENST00000384395 102 ntBASIC0.16□□□□□ -2.38
MT-ND4P03905 MIR518A1-201ENST00000385068 85 ntBASIC0.16□□□□□ -2.38
MT-ND4P03905 MIR938-201ENST00000401216 83 ntBASIC0.16□□□□□ -2.38
MT-ND4P03905 AL160004.2-201ENST00000432935 350 ntBASIC0.16□□□□□ -2.38
MT-ND4P03905 POLR2KP2-201ENST00000438155 177 ntBASIC0.16□□□□□ -2.38
MT-ND4P03905 AC107297.1-201ENST00000459991 176 ntBASIC0.16□□□□□ -2.38
MT-ND4P03905 SNORA25.12-201ENST00000516202 82 ntBASIC0.16□□□□□ -2.38
MT-ND4P03905 RNA5SP220-201ENST00000516298 104 ntBASIC0.16□□□□□ -2.38
MT-ND4P03905 SNORA20.3-201ENST00000516880 132 ntBASIC0.16□□□□□ -2.38
MT-ND4P03905 RNU6-958P-201ENST00000516995 106 ntBASIC0.16□□□□□ -2.38
MT-ND4P03905 AC008608.1-201ENST00000603910 127 ntBASIC0.16□□□□□ -2.38
MT-ND4P03905 AL355297.3-201ENST00000604082 446 ntBASIC0.16□□□□□ -2.38
MT-ND4P03905 SNORD58B-201ENST00000607313 66 ntBASIC0.16□□□□□ -2.38
MT-ND4P03905 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.16□□□□□ -2.38
MT-ND4P03905 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.16□□□□□ -2.38
MT-ND4P03905 AC139792.2-201ENST00000624218 587 ntBASIC0.16□□□□□ -2.38
MT-ND4P03905 MIR1302-1-201ENST00000637932 143 ntBASIC0.16□□□□□ -2.38
MT-ND4P03905 SNORD115-34-201ENST00000362441 82 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNORD115-12-201ENST00000362583 82 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 Y_RNA.39-201ENST00000362620 98 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNORD115-29-201ENST00000362834 82 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNORD115-9-201ENST00000362912 82 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNORD115-21-201ENST00000362963 81 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNORD115-14-201ENST00000363090 81 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNORD115-13-201ENST00000363358 82 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 Y_RNA.142-201ENST00000363491 102 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNORD115-41-201ENST00000363608 82 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNORD115-11-201ENST00000363616 82 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNORD115-5-201ENST00000363633 82 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNORD115-39-201ENST00000363694 82 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNORD115-4-201ENST00000363810 82 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNORD115-16-201ENST00000363887 82 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNORD115-6-201ENST00000363942 82 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNORD115-42-201ENST00000364273 82 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNORD115-15-201ENST00000364809 81 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNORD115-1-201ENST00000364961 82 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNORD115-26-201ENST00000365067 82 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNORD115-10-201ENST00000365073 81 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNORD115-43-201ENST00000365503 82 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNORD115-36-201ENST00000365629 82 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.15□□□□□ -2.39
MT-ND4P03905 Y_RNA.384-201ENST00000383909 102 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 RNU6-913P-201ENST00000390913 95 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 RNU6-308P-201ENST00000390957 107 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNORD100-201ENST00000408573 76 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 AC138393.2-201ENST00000414742 246 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 SNRPGP12-201ENST00000449481 213 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 RNU7-152P-201ENST00000458982 64 ntBASIC0.15□□□□□ -2.39
MT-ND4P03905 U8.20-201ENST00000459445 131 ntBASIC0.15□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 173 ms