Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 MIR4744-201ENST00000581563 82 ntBASIC1.45□□□□□ -2.18
SMCHD1A6NHR9 Y_RNA.412-201ENST00000384001 104 ntBASIC1.45□□□□□ -2.18
SMCHD1A6NHR9 Y_RNA.562-201ENST00000384695 113 ntBASIC1.45□□□□□ -2.18
SMCHD1A6NHR9 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.45□□□□□ -2.18
SMCHD1A6NHR9 HSPE1P24-201ENST00000450782 238 ntBASIC1.45□□□□□ -2.18
SMCHD1A6NHR9 AC023449.1-201ENST00000454464 154 ntBASIC1.45□□□□□ -2.18
SMCHD1A6NHR9 AC087343.1-201ENST00000477341 475 ntBASIC1.45□□□□□ -2.18
SMCHD1A6NHR9 AC023790.1-201ENST00000482174 347 ntBASIC1.45□□□□□ -2.18
SMCHD1A6NHR9 RPS27P21-201ENST00000486977 252 ntBASIC1.45□□□□□ -2.18
SMCHD1A6NHR9 RNY3P16-201ENST00000516338 101 ntBASIC1.45□□□□□ -2.18
SMCHD1A6NHR9 AL365205.2-201ENST00000594586 68 ntBASIC1.45□□□□□ -2.18
SMCHD1A6NHR9 AC022709.1-201ENST00000615967 87 ntBASIC1.45□□□□□ -2.18
SMCHD1A6NHR9 Y_RNA.23-201ENST00000362496 106 ntBASIC1.44□□□□□ -2.18
SMCHD1A6NHR9 RNA5SP276-201ENST00000362580 94 ntBASIC1.44□□□□□ -2.18
SMCHD1A6NHR9 RNU6-1205P-201ENST00000363625 106 ntBASIC1.44□□□□□ -2.18
SMCHD1A6NHR9 Y_RNA.476-201ENST00000384347 108 ntBASIC1.44□□□□□ -2.18
SMCHD1A6NHR9 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.44□□□□□ -2.18
SMCHD1A6NHR9 AL606845.1-201ENST00000404881 255 ntBASIC1.44□□□□□ -2.18
SMCHD1A6NHR9 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.44□□□□□ -2.18
SMCHD1A6NHR9 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.44□□□□□ -2.18
SMCHD1A6NHR9 Y_RNA.662-201ENST00000516028 97 ntBASIC1.44□□□□□ -2.18
SMCHD1A6NHR9 RN7SKP164-201ENST00000516138 266 ntBASIC1.44□□□□□ -2.18
SMCHD1A6NHR9 AC007751.1-201ENST00000529260 376 ntBASIC1.44□□□□□ -2.18
SMCHD1A6NHR9 AL513423.1-201ENST00000621695 132 ntBASIC1.44□□□□□ -2.18
SMCHD1A6NHR9 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
SMCHD1A6NHR9 Y_RNA.75-201ENST00000362927 97 ntBASIC1.44□□□□□ -2.18
SMCHD1A6NHR9 SNORA16B-201ENST00000364674 135 ntBASIC1.44□□□□□ -2.18
SMCHD1A6NHR9 RPS29P1-201ENST00000465274 159 ntBASIC1.44□□□□□ -2.18
SMCHD1A6NHR9 SNORA44.1-201ENST00000517031 108 ntBASIC1.44□□□□□ -2.18
SMCHD1A6NHR9 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.44□□□□□ -2.18
SMCHD1A6NHR9 AC072026.1-201ENST00000605023 201 ntBASIC1.44□□□□□ -2.18
SMCHD1A6NHR9 RNU6-1318P-201ENST00000365389 103 ntBASIC1.43□□□□□ -2.18
SMCHD1A6NHR9 Y_RNA.518-201ENST00000384552 113 ntBASIC1.43□□□□□ -2.18
SMCHD1A6NHR9 RNU6-136P-201ENST00000384663 107 ntBASIC1.43□□□□□ -2.18
SMCHD1A6NHR9 MIR548J-201ENST00000408833 112 ntBASIC1.43□□□□□ -2.18
SMCHD1A6NHR9 MLLT10P1-201ENST00000418346 262 ntBASIC1.43□□□□□ -2.18
SMCHD1A6NHR9 RNU7-34P-201ENST00000459394 64 ntBASIC1.43□□□□□ -2.18
SMCHD1A6NHR9 AC114811.1-201ENST00000507207 168 ntBASIC1.43□□□□□ -2.18
SMCHD1A6NHR9 RNU6-111P-201ENST00000517179 105 ntBASIC1.43□□□□□ -2.18
SMCHD1A6NHR9 RNU2-4P-201ENST00000606190 192 ntBASIC1.43□□□□□ -2.18
SMCHD1A6NHR9 SNORA28-201ENST00000606769 126 ntBASIC1.43□□□□□ -2.18
SMCHD1A6NHR9 RNU6-42P-201ENST00000384165 107 ntBASIC1.42□□□□□ -2.18
SMCHD1A6NHR9 AC245047.8-201ENST00000456455 284 ntBASIC1.42□□□□□ -2.18
SMCHD1A6NHR9 RPS29P23-201ENST00000458635 123 ntBASIC1.42□□□□□ -2.18
SMCHD1A6NHR9 AC092991.1-201ENST00000477176 376 ntBASIC1.42□□□□□ -2.18
SMCHD1A6NHR9 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.42□□□□□ -2.18
SMCHD1A6NHR9 FTX_2.1-201ENST00000618816 94 ntBASIC1.42□□□□□ -2.18
SMCHD1A6NHR9 Y_RNA.370-201ENST00000365589 108 ntBASIC1.42□□□□□ -2.18
SMCHD1A6NHR9 RNU6-211P-201ENST00000384047 107 ntBASIC1.42□□□□□ -2.18
SMCHD1A6NHR9 Y_RNA.571-201ENST00000384753 98 ntBASIC1.42□□□□□ -2.18
SMCHD1A6NHR9 MIR526A2-201ENST00000390198 65 ntBASIC1.42□□□□□ -2.18
SMCHD1A6NHR9 RNU6-918P-201ENST00000391219 106 ntBASIC1.42□□□□□ -2.18
SMCHD1A6NHR9 AC244636.1-201ENST00000421152 228 ntBASIC1.42□□□□□ -2.18
SMCHD1A6NHR9 RNU6-861P-201ENST00000516745 106 ntBASIC1.42□□□□□ -2.18
SMCHD1A6NHR9 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.42□□□□□ -2.18
SMCHD1A6NHR9 MIR3122-201ENST00000577243 73 ntBASIC1.42□□□□□ -2.18
SMCHD1A6NHR9 AC103810.8-201ENST00000607347 118 ntBASIC1.42□□□□□ -2.18
SMCHD1A6NHR9 Y_RNA.229-201ENST00000364347 113 ntBASIC1.41□□□□□ -2.18
SMCHD1A6NHR9 RNU6-597P-201ENST00000365620 102 ntBASIC1.41□□□□□ -2.18
SMCHD1A6NHR9 RNU6-514P-201ENST00000384208 107 ntBASIC1.41□□□□□ -2.18
SMCHD1A6NHR9 CALM2P4-201ENST00000430810 426 ntBASIC1.41□□□□□ -2.18
SMCHD1A6NHR9 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.41□□□□□ -2.18
SMCHD1A6NHR9 RNU7-28P-201ENST00000516759 62 ntBASIC1.41□□□□□ -2.18
SMCHD1A6NHR9 AC090425.1-201ENST00000610007 140 ntBASIC1.41□□□□□ -2.18
SMCHD1A6NHR9 MIR6734-201ENST00000621166 68 ntBASIC1.41□□□□□ -2.18
SMCHD1A6NHR9 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.4□□□□□ -2.18
SMCHD1A6NHR9 Y_RNA.199-201ENST00000364014 102 ntBASIC1.4□□□□□ -2.18
SMCHD1A6NHR9 RNU6-200P-201ENST00000364743 107 ntBASIC1.4□□□□□ -2.18
SMCHD1A6NHR9 MIR626-201ENST00000385032 94 ntBASIC1.4□□□□□ -2.18
SMCHD1A6NHR9 RN7SKP51-201ENST00000410781 304 ntBASIC1.4□□□□□ -2.18
SMCHD1A6NHR9 RNU6-1054P-201ENST00000411293 104 ntBASIC1.4□□□□□ -2.18
SMCHD1A6NHR9 JTBP1-201ENST00000441314 247 ntBASIC1.4□□□□□ -2.18
SMCHD1A6NHR9 AC004223.1-201ENST00000479840 271 ntBASIC1.4□□□□□ -2.18
SMCHD1A6NHR9 SNORD116-28-201ENST00000516123 91 ntBASIC1.4□□□□□ -2.18
SMCHD1A6NHR9 RNA5SP168-201ENST00000516642 112 ntBASIC1.4□□□□□ -2.18
SMCHD1A6NHR9 RNU6-1223P-201ENST00000517124 104 ntBASIC1.4□□□□□ -2.18
SMCHD1A6NHR9 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.4□□□□□ -2.18
SMCHD1A6NHR9 Y_RNA.297-201ENST00000364950 91 ntBASIC1.4□□□□□ -2.19
SMCHD1A6NHR9 RNU6-125P-201ENST00000384505 107 ntBASIC1.4□□□□□ -2.19
SMCHD1A6NHR9 RNU6-1031P-201ENST00000384773 107 ntBASIC1.4□□□□□ -2.19
SMCHD1A6NHR9 MIR660-201ENST00000385235 97 ntBASIC1.4□□□□□ -2.19
SMCHD1A6NHR9 U8.16-201ENST00000391279 133 ntBASIC1.4□□□□□ -2.19
SMCHD1A6NHR9 MIR548O-201ENST00000408583 114 ntBASIC1.4□□□□□ -2.19
SMCHD1A6NHR9 RNU6-1096P-201ENST00000517089 102 ntBASIC1.4□□□□□ -2.19
SMCHD1A6NHR9 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.4□□□□□ -2.19
SMCHD1A6NHR9 MRPS18CP4-201ENST00000535821 231 ntBASIC1.4□□□□□ -2.19
SMCHD1A6NHR9 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.4□□□□□ -2.19
SMCHD1A6NHR9 AL049861.1-201ENST00000603130 150 ntBASIC1.4□□□□□ -2.19
SMCHD1A6NHR9 RNU6-1082P-201ENST00000364574 107 ntBASIC1.39□□□□□ -2.19
SMCHD1A6NHR9 Y_RNA.478-201ENST00000384358 107 ntBASIC1.39□□□□□ -2.19
SMCHD1A6NHR9 MIR522-201ENST00000385071 87 ntBASIC1.39□□□□□ -2.19
SMCHD1A6NHR9 MIR616-201ENST00000385293 97 ntBASIC1.39□□□□□ -2.19
SMCHD1A6NHR9 RPL23AP6-201ENST00000446637 472 ntBASIC1.39□□□□□ -2.19
SMCHD1A6NHR9 SNRPGP8-201ENST00000454064 226 ntBASIC1.39□□□□□ -2.19
SMCHD1A6NHR9 GHRLOS.1-201ENST00000610995 70 ntBASIC1.39□□□□□ -2.19
SMCHD1A6NHR9 Y_RNA.802-201ENST00000614892 130 ntBASIC1.39□□□□□ -2.19
SMCHD1A6NHR9 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
SMCHD1A6NHR9 RNU6-199P-201ENST00000362954 107 ntBASIC1.39□□□□□ -2.19
SMCHD1A6NHR9 RNU6-682P-201ENST00000363843 106 ntBASIC1.39□□□□□ -2.19
SMCHD1A6NHR9 RNU6-209P-201ENST00000384118 107 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms