Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 Y_RNA.312-201ENST00000365089 102 ntBASIC2.63□□□□□ -1.99
CCDC9Q9Y3X0 Y_RNA.322-201ENST00000365151 102 ntBASIC2.63□□□□□ -1.99
CCDC9Q9Y3X0 Y_RNA.464-201ENST00000384282 110 ntBASIC2.63□□□□□ -1.99
CCDC9Q9Y3X0 MIR7-2-201ENST00000384970 110 ntBASIC2.63□□□□□ -1.99
CCDC9Q9Y3X0 MIR1298-201ENST00000408783 112 ntBASIC2.63□□□□□ -1.99
CCDC9Q9Y3X0 Y_RNA.650-201ENST00000459002 102 ntBASIC2.63□□□□□ -1.99
CCDC9Q9Y3X0 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.63□□□□□ -1.99
CCDC9Q9Y3X0 AC079140.2-201ENST00000506193 142 ntBASIC2.63□□□□□ -1.99
CCDC9Q9Y3X0 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.63□□□□□ -1.99
CCDC9Q9Y3X0 RNU6-1007P-201ENST00000516586 107 ntBASIC2.63□□□□□ -1.99
CCDC9Q9Y3X0 Y_RNA.777-201ENST00000516982 102 ntBASIC2.63□□□□□ -1.99
CCDC9Q9Y3X0 RPL23AP91-201ENST00000569211 455 ntBASIC2.63□□□□□ -1.99
CCDC9Q9Y3X0 MIR4422-201ENST00000581938 83 ntBASIC2.63□□□□□ -1.99
CCDC9Q9Y3X0 Y_RNA.771-201ENST00000598668 102 ntBASIC2.63□□□□□ -1.99
CCDC9Q9Y3X0 Y_RNA.789-201ENST00000622480 102 ntBASIC2.63□□□□□ -1.99
CCDC9Q9Y3X0 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC9Q9Y3X0 Y_RNA.83-201ENST00000363005 113 ntBASIC2.62□□□□□ -1.99
CCDC9Q9Y3X0 RNU6-774P-201ENST00000363238 107 ntBASIC2.62□□□□□ -1.99
CCDC9Q9Y3X0 snoU2-30.1-201ENST00000365012 70 ntBASIC2.62□□□□□ -1.99
CCDC9Q9Y3X0 AL627390.1-201ENST00000396055 340 ntBASIC2.62□□□□□ -1.99
CCDC9Q9Y3X0 Y_RNA.793-201ENST00000411222 111 ntBASIC2.62□□□□□ -1.99
CCDC9Q9Y3X0 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.62□□□□□ -1.99
CCDC9Q9Y3X0 AC023449.1-201ENST00000454464 154 ntBASIC2.62□□□□□ -1.99
CCDC9Q9Y3X0 RNU6-1116P-201ENST00000517269 99 ntBASIC2.62□□□□□ -1.99
CCDC9Q9Y3X0 AC087685.1-201ENST00000587507 141 ntBASIC2.62□□□□□ -1.99
CCDC9Q9Y3X0 Y_RNA.802-201ENST00000614892 130 ntBASIC2.62□□□□□ -1.99
CCDC9Q9Y3X0 RNU6-199P-201ENST00000362954 107 ntBASIC2.61□□□□□ -1.99
CCDC9Q9Y3X0 PCNPP3-201ENST00000393579 471 ntBASIC2.61□□□□□ -1.99
CCDC9Q9Y3X0 Y_RNA.644-201ENST00000459006 113 ntBASIC2.61□□□□□ -1.99
CCDC9Q9Y3X0 AC114811.1-201ENST00000507207 168 ntBASIC2.61□□□□□ -1.99
CCDC9Q9Y3X0 Y_RNA.674-201ENST00000516362 113 ntBASIC2.61□□□□□ -1.99
CCDC9Q9Y3X0 MIR3910-1-201ENST00000580936 111 ntBASIC2.61□□□□□ -1.99
CCDC9Q9Y3X0 AC084768.2-201ENST00000622736 221 ntBASIC2.61□□□□□ -1.99
CCDC9Q9Y3X0 RNU6-833P-201ENST00000363486 107 ntBASIC2.6□□□□□ -1.99
CCDC9Q9Y3X0 Y_RNA.199-201ENST00000364014 102 ntBASIC2.6□□□□□ -1.99
CCDC9Q9Y3X0 SNORD1A-201ENST00000364968 72 ntBASIC2.6□□□□□ -1.99
CCDC9Q9Y3X0 RNU6-969P-201ENST00000383900 105 ntBASIC2.6□□□□□ -1.99
CCDC9Q9Y3X0 MIR802-201ENST00000390235 94 ntBASIC2.6□□□□□ -1.99
CCDC9Q9Y3X0 MIR1278-201ENST00000408753 81 ntBASIC2.6□□□□□ -1.99
CCDC9Q9Y3X0 AC093850.1-201ENST00000454121 251 ntBASIC2.6□□□□□ -1.99
CCDC9Q9Y3X0 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC9Q9Y3X0 RNU6-1212P-201ENST00000517023 104 ntBASIC2.6□□□□□ -1.99
CCDC9Q9Y3X0 AC019176.1-201ENST00000518519 225 ntBASIC2.6□□□□□ -1.99
CCDC9Q9Y3X0 MIR3937-201ENST00000580135 106 ntBASIC2.6□□□□□ -1.99
CCDC9Q9Y3X0 AC106754.2-201ENST00000623006 233 ntBASIC2.6□□□□□ -1.99
CCDC9Q9Y3X0 MIR302D-201ENST00000362275 68 ntBASIC2.59□□□□□ -1.99
CCDC9Q9Y3X0 RNU6-1065P-201ENST00000384513 106 ntBASIC2.59□□□□□ -1.99
CCDC9Q9Y3X0 RNU6-383P-201ENST00000410864 94 ntBASIC2.59□□□□□ -1.99
CCDC9Q9Y3X0 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC9Q9Y3X0 HMGN2P32-201ENST00000444648 269 ntBASIC2.59□□□□□ -1.99
CCDC9Q9Y3X0 SNORD2.1-201ENST00000458762 69 ntBASIC2.59□□□□□ -1.99
CCDC9Q9Y3X0 RNU7-120P-201ENST00000459334 63 ntBASIC2.59□□□□□ -1.99
CCDC9Q9Y3X0 Y_RNA.703-201ENST00000516846 111 ntBASIC2.59□□□□□ -1.99
CCDC9Q9Y3X0 CBX3P4-201ENST00000538909 354 ntBASIC2.59□□□□□ -1.99
CCDC9Q9Y3X0 MIR3683-201ENST00000580847 82 ntBASIC2.59□□□□□ -1.99
CCDC9Q9Y3X0 MIR4303-201ENST00000581299 66 ntBASIC2.59□□□□□ -1.99
CCDC9Q9Y3X0 MIR411-201ENST00000362239 96 ntBASIC2.58□□□□□ -2
CCDC9Q9Y3X0 SNORA8.3-201ENST00000384679 139 ntBASIC2.58□□□□□ -2
CCDC9Q9Y3X0 RN7SKP51-201ENST00000410781 304 ntBASIC2.58□□□□□ -2
CCDC9Q9Y3X0 MTATP6P29-201ENST00000415057 132 ntBASIC2.58□□□□□ -2
CCDC9Q9Y3X0 SNORD45.4-201ENST00000516629 73 ntBASIC2.58□□□□□ -2
CCDC9Q9Y3X0 AP002392.1-201ENST00000537692 208 ntBASIC2.58□□□□□ -2
CCDC9Q9Y3X0 MIR4643-201ENST00000577473 78 ntBASIC2.58□□□□□ -2
CCDC9Q9Y3X0 MIR3133-201ENST00000583157 78 ntBASIC2.58□□□□□ -2
CCDC9Q9Y3X0 SNORD14E-201ENST00000364009 85 ntBASIC2.57□□□□□ -2
CCDC9Q9Y3X0 MIR526A2-201ENST00000390198 65 ntBASIC2.57□□□□□ -2
CCDC9Q9Y3X0 RNU1-78P-201ENST00000391248 165 ntBASIC2.57□□□□□ -2
CCDC9Q9Y3X0 RNU6-651P-201ENST00000411040 105 ntBASIC2.57□□□□□ -2
CCDC9Q9Y3X0 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.57□□□□□ -2
CCDC9Q9Y3X0 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.57□□□□□ -2
CCDC9Q9Y3X0 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.57□□□□□ -2
CCDC9Q9Y3X0 RNU6-255P-201ENST00000516957 105 ntBASIC2.57□□□□□ -2
CCDC9Q9Y3X0 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
CCDC9Q9Y3X0 AC005336.3-201ENST00000623833 2679 ntBASIC2.56□□□□□ -2
CCDC9Q9Y3X0 RNU6-187P-201ENST00000384139 106 ntBASIC2.56□□□□□ -2
CCDC9Q9Y3X0 RNA5SP496-201ENST00000391240 109 ntBASIC2.56□□□□□ -2
CCDC9Q9Y3X0 SNX2P2-201ENST00000424553 323 ntBASIC2.56□□□□□ -2
CCDC9Q9Y3X0 AC107393.1-201ENST00000512403 346 ntBASIC2.56□□□□□ -2
CCDC9Q9Y3X0 MIR5089-201ENST00000580047 84 ntBASIC2.56□□□□□ -2
CCDC9Q9Y3X0 MIR4285-201ENST00000581001 85 ntBASIC2.56□□□□□ -2
CCDC9Q9Y3X0 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC2.56□□□□□ -2
CCDC9Q9Y3X0 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC2.56□□□□□ -2
CCDC9Q9Y3X0 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.56□□□□□ -2
CCDC9Q9Y3X0 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC9Q9Y3X0 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CCDC9Q9Y3X0 MIRLET7G-201ENST00000362280 84 ntBASIC2.55□□□□□ -2
CCDC9Q9Y3X0 Y_RNA.242-201ENST00000364473 110 ntBASIC2.55□□□□□ -2
CCDC9Q9Y3X0 MIR548I2-201ENST00000408348 149 ntBASIC2.55□□□□□ -2
CCDC9Q9Y3X0 COX6CP14-201ENST00000469580 174 ntBASIC2.55□□□□□ -2
CCDC9Q9Y3X0 RNU6-322P-201ENST00000516010 103 ntBASIC2.55□□□□□ -2
CCDC9Q9Y3X0 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.55□□□□□ -2
CCDC9Q9Y3X0 DNAJC19P9-201ENST00000555084 351 ntBASIC2.55□□□□□ -2
CCDC9Q9Y3X0 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.55□□□□□ -2
CCDC9Q9Y3X0 MIR5688-201ENST00000580619 83 ntBASIC2.55□□□□□ -2
CCDC9Q9Y3X0 SNORA4-201ENST00000584302 138 ntBASIC2.55□□□□□ -2
CCDC9Q9Y3X0 Z83818.1-201ENST00000603584 150 ntBASIC2.55□□□□□ -2
CCDC9Q9Y3X0 Y_RNA.76-201ENST00000362931 109 ntBASIC2.54□□□□□ -2
CCDC9Q9Y3X0 Y_RNA.506-201ENST00000384494 102 ntBASIC2.54□□□□□ -2
CCDC9Q9Y3X0 RNU6-125P-201ENST00000384505 107 ntBASIC2.54□□□□□ -2
CCDC9Q9Y3X0 MIR452-201ENST00000385020 85 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms