Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
CHMP3Q9Y3E7 RNU6-349P-201ENST00000362402 107 ntBASIC3.22□□□□□ -1.89
CHMP3Q9Y3E7 RNA5SP126-201ENST00000365092 109 ntBASIC3.22□□□□□ -1.89
CHMP3Q9Y3E7 Y_RNA.328-201ENST00000365208 113 ntBASIC3.22□□□□□ -1.89
CHMP3Q9Y3E7 Y_RNA.410-201ENST00000383992 113 ntBASIC3.22□□□□□ -1.89
CHMP3Q9Y3E7 RNU6-756P-201ENST00000383997 107 ntBASIC3.22□□□□□ -1.89
CHMP3Q9Y3E7 SNORA51.10-201ENST00000384418 136 ntBASIC3.22□□□□□ -1.89
CHMP3Q9Y3E7 MIR515-2-201ENST00000384883 83 ntBASIC3.22□□□□□ -1.89
CHMP3Q9Y3E7 MIR515-1-201ENST00000384884 83 ntBASIC3.22□□□□□ -1.89
CHMP3Q9Y3E7 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.22□□□□□ -1.89
CHMP3Q9Y3E7 AC245047.3-201ENST00000429428 127 ntBASIC3.22□□□□□ -1.89
CHMP3Q9Y3E7 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.22□□□□□ -1.89
CHMP3Q9Y3E7 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CHMP3Q9Y3E7 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
CHMP3Q9Y3E7 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
CHMP3Q9Y3E7 RNU6-640P-201ENST00000363693 105 ntBASIC3.21□□□□□ -1.9
CHMP3Q9Y3E7 snoU2-30.1-201ENST00000365012 70 ntBASIC3.21□□□□□ -1.9
CHMP3Q9Y3E7 Y_RNA.348-201ENST00000365403 103 ntBASIC3.21□□□□□ -1.9
CHMP3Q9Y3E7 AL445646.1-201ENST00000431784 216 ntBASIC3.21□□□□□ -1.9
CHMP3Q9Y3E7 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.21□□□□□ -1.9
CHMP3Q9Y3E7 AL513328.1-201ENST00000446460 224 ntBASIC3.21□□□□□ -1.9
CHMP3Q9Y3E7 RPL39P34-201ENST00000477141 156 ntBASIC3.21□□□□□ -1.9
CHMP3Q9Y3E7 RNU6-1116P-201ENST00000517269 99 ntBASIC3.21□□□□□ -1.9
CHMP3Q9Y3E7 RNU6-766P-201ENST00000362478 107 ntBASIC3.2□□□□□ -1.9
CHMP3Q9Y3E7 RNU6-23P-201ENST00000363283 107 ntBASIC3.2□□□□□ -1.9
CHMP3Q9Y3E7 Y_RNA.198-201ENST00000364013 98 ntBASIC3.2□□□□□ -1.9
CHMP3Q9Y3E7 RNU6-1014P-201ENST00000383940 103 ntBASIC3.2□□□□□ -1.9
CHMP3Q9Y3E7 SNORA51.5-201ENST00000384126 131 ntBASIC3.2□□□□□ -1.9
CHMP3Q9Y3E7 RNU6-301P-201ENST00000384277 107 ntBASIC3.2□□□□□ -1.9
CHMP3Q9Y3E7 RN7SL297P-201ENST00000483161 293 ntBASIC3.2□□□□□ -1.9
CHMP3Q9Y3E7 RNA5SP320-201ENST00000516263 124 ntBASIC3.2□□□□□ -1.9
CHMP3Q9Y3E7 RNU6-830P-201ENST00000516353 107 ntBASIC3.2□□□□□ -1.9
CHMP3Q9Y3E7 RNA5SP282-201ENST00000516355 108 ntBASIC3.2□□□□□ -1.9
CHMP3Q9Y3E7 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC3.2□□□□□ -1.9
CHMP3Q9Y3E7 MIR4435-1-201ENST00000582552 80 ntBASIC3.2□□□□□ -1.9
CHMP3Q9Y3E7 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC3.2□□□□□ -1.9
CHMP3Q9Y3E7 AC015726.2-201ENST00000620112 122 ntBASIC3.2□□□□□ -1.9
CHMP3Q9Y3E7 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CHMP3Q9Y3E7 ZNF720P1-201ENST00000562403 1939 ntBASIC3.2□□□□□ -1.9
CHMP3Q9Y3E7 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
CHMP3Q9Y3E7 Y_RNA.369-201ENST00000365568 117 ntBASIC3.19□□□□□ -1.9
CHMP3Q9Y3E7 Y_RNA.440-201ENST00000384120 114 ntBASIC3.19□□□□□ -1.9
CHMP3Q9Y3E7 SNORA80E-201ENST00000384744 137 ntBASIC3.19□□□□□ -1.9
CHMP3Q9Y3E7 RNA5SP508-201ENST00000411327 119 ntBASIC3.19□□□□□ -1.9
CHMP3Q9Y3E7 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC3.19□□□□□ -1.9
CHMP3Q9Y3E7 AL445687.1-201ENST00000439946 251 ntBASIC3.19□□□□□ -1.9
CHMP3Q9Y3E7 MIR3616-201ENST00000584070 92 ntBASIC3.19□□□□□ -1.9
CHMP3Q9Y3E7 MIR4298-201ENST00000584380 73 ntBASIC3.19□□□□□ -1.9
CHMP3Q9Y3E7 HSPE1P19-201ENST00000603327 295 ntBASIC3.19□□□□□ -1.9
CHMP3Q9Y3E7 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.19□□□□□ -1.9
CHMP3Q9Y3E7 Y_RNA.265-201ENST00000364677 108 ntBASIC3.18□□□□□ -1.9
CHMP3Q9Y3E7 Y_RNA.362-201ENST00000365518 110 ntBASIC3.18□□□□□ -1.9
CHMP3Q9Y3E7 AC008413.1-201ENST00000511864 177 ntBASIC3.18□□□□□ -1.9
CHMP3Q9Y3E7 SUMO2P16-201ENST00000519475 264 ntBASIC3.18□□□□□ -1.9
CHMP3Q9Y3E7 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.18□□□□□ -1.9
CHMP3Q9Y3E7 AC022523.2-201ENST00000561045 150 ntBASIC3.18□□□□□ -1.9
CHMP3Q9Y3E7 AC021443.1-201ENST00000604478 211 ntBASIC3.18□□□□□ -1.9
CHMP3Q9Y3E7 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHMP3Q9Y3E7 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHMP3Q9Y3E7 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.17□□□□□ -1.9
CHMP3Q9Y3E7 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
CHMP3Q9Y3E7 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CHMP3Q9Y3E7 RNU6-414P-201ENST00000363705 104 ntBASIC3.17□□□□□ -1.9
CHMP3Q9Y3E7 RNU6-1104P-201ENST00000384723 104 ntBASIC3.17□□□□□ -1.9
CHMP3Q9Y3E7 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC3.17□□□□□ -1.9
CHMP3Q9Y3E7 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC3.17□□□□□ -1.9
CHMP3Q9Y3E7 AP001318.4-201ENST00000616637 121 ntBASIC3.17□□□□□ -1.9
CHMP3Q9Y3E7 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.17□□□□□ -1.9
CHMP3Q9Y3E7 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CHMP3Q9Y3E7 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CHMP3Q9Y3E7 Y_RNA.298-201ENST00000364960 107 ntBASIC3.16□□□□□ -1.9
CHMP3Q9Y3E7 RNY1P6-201ENST00000384193 109 ntBASIC3.16□□□□□ -1.9
CHMP3Q9Y3E7 MIR1302-5-201ENST00000408164 150 ntBASIC3.16□□□□□ -1.9
CHMP3Q9Y3E7 STAG3L5P-204ENST00000443759 179 ntBASIC3.16□□□□□ -1.9
CHMP3Q9Y3E7 RNU7-123P-201ENST00000515911 60 ntBASIC3.16□□□□□ -1.9
CHMP3Q9Y3E7 RNU7-70P-201ENST00000516941 66 ntBASIC3.16□□□□□ -1.9
CHMP3Q9Y3E7 AP003484.1-201ENST00000530974 250 ntBASIC3.16□□□□□ -1.9
CHMP3Q9Y3E7 AL589743.1-201ENST00000551932 2712 ntBASIC3.16□□□□□ -1.9
CHMP3Q9Y3E7 VTRNA1-1-201ENST00000363120 99 ntBASIC3.15□□□□□ -1.91
CHMP3Q9Y3E7 RNU1-133P-201ENST00000364867 167 ntBASIC3.15□□□□□ -1.91
CHMP3Q9Y3E7 MIR27B-201ENST00000385129 97 ntBASIC3.15□□□□□ -1.91
CHMP3Q9Y3E7 RNA5SP482-201ENST00000391269 118 ntBASIC3.15□□□□□ -1.91
CHMP3Q9Y3E7 U8.17-201ENST00000391292 132 ntBASIC3.15□□□□□ -1.91
CHMP3Q9Y3E7 SNORA19.1-201ENST00000410656 129 ntBASIC3.15□□□□□ -1.91
CHMP3Q9Y3E7 RN7SKP284-201ENST00000411002 343 ntBASIC3.15□□□□□ -1.91
CHMP3Q9Y3E7 RNU7-164P-201ENST00000459221 62 ntBASIC3.15□□□□□ -1.91
CHMP3Q9Y3E7 AC114811.1-201ENST00000507207 168 ntBASIC3.15□□□□□ -1.91
CHMP3Q9Y3E7 SNORA18.7-201ENST00000516910 131 ntBASIC3.15□□□□□ -1.91
CHMP3Q9Y3E7 U4atac.1-201ENST00000618345 95 ntBASIC3.15□□□□□ -1.91
CHMP3Q9Y3E7 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
CHMP3Q9Y3E7 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.15□□□□□ -1.91
CHMP3Q9Y3E7 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CHMP3Q9Y3E7 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
CHMP3Q9Y3E7 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
CHMP3Q9Y3E7 Y_RNA.213-201ENST00000364178 111 ntBASIC3.14□□□□□ -1.91
CHMP3Q9Y3E7 RNU4-16P-201ENST00000364737 141 ntBASIC3.14□□□□□ -1.91
CHMP3Q9Y3E7 Y_RNA.323-201ENST00000365157 109 ntBASIC3.14□□□□□ -1.91
CHMP3Q9Y3E7 Y_RNA.336-201ENST00000365307 109 ntBASIC3.14□□□□□ -1.91
CHMP3Q9Y3E7 Y_RNA.351-201ENST00000365436 96 ntBASIC3.14□□□□□ -1.91
CHMP3Q9Y3E7 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms