Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
SHROOM4Q9ULL8 Y_RNA.115-201ENST00000363272 98 ntBASIC1.84□□□□□ -2.11
SHROOM4Q9ULL8 Y_RNA.535-201ENST00000384612 99 ntBASIC1.84□□□□□ -2.11
SHROOM4Q9ULL8 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
SHROOM4Q9ULL8 AL590004.1-201ENST00000405321 300 ntBASIC1.84□□□□□ -2.11
SHROOM4Q9ULL8 SNORD116-28-201ENST00000516123 91 ntBASIC1.84□□□□□ -2.11
SHROOM4Q9ULL8 AC136932.1-201ENST00000574771 208 ntBASIC1.84□□□□□ -2.11
SHROOM4Q9ULL8 MIR330-201ENST00000362196 94 ntBASIC1.83□□□□□ -2.12
SHROOM4Q9ULL8 Y_RNA.222-201ENST00000364264 102 ntBASIC1.83□□□□□ -2.12
SHROOM4Q9ULL8 SNORD115-46-201ENST00000390982 71 ntBASIC1.83□□□□□ -2.12
SHROOM4Q9ULL8 RNU6-897P-201ENST00000517135 105 ntBASIC1.83□□□□□ -2.12
SHROOM4Q9ULL8 AC008269.2-201ENST00000561915 1105 ntBASIC1.83□□□□□ -2.12
SHROOM4Q9ULL8 MIR548AY-201ENST00000617669 107 ntBASIC1.83□□□□□ -2.12
SHROOM4Q9ULL8 Y_RNA.152-201ENST00000363578 100 ntBASIC1.82□□□□□ -2.12
SHROOM4Q9ULL8 RNA5SP330-201ENST00000517096 96 ntBASIC1.82□□□□□ -2.12
SHROOM4Q9ULL8 MIR6513-201ENST00000621188 64 ntBASIC1.82□□□□□ -2.12
SHROOM4Q9ULL8 AC027335.2-201ENST00000624030 375 ntBASIC1.82□□□□□ -2.12
SHROOM4Q9ULL8 RNU4-90P-201ENST00000362773 141 ntBASIC1.82□□□□□ -2.12
SHROOM4Q9ULL8 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.82□□□□□ -2.12
SHROOM4Q9ULL8 Y_RNA.602-201ENST00000410535 92 ntBASIC1.82□□□□□ -2.12
SHROOM4Q9ULL8 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.82□□□□□ -2.12
SHROOM4Q9ULL8 RNU6-397P-201ENST00000516226 104 ntBASIC1.82□□□□□ -2.12
SHROOM4Q9ULL8 DEFB108E-201ENST00000524692 240 ntBASIC1.82□□□□□ -2.12
SHROOM4Q9ULL8 RNU6-797P-201ENST00000363101 109 ntBASIC1.81□□□□□ -2.12
SHROOM4Q9ULL8 RNU6-801P-201ENST00000364087 105 ntBASIC1.81□□□□□ -2.12
SHROOM4Q9ULL8 AC127455.1-201ENST00000565496 145 ntBASIC1.81□□□□□ -2.12
SHROOM4Q9ULL8 MTND4P29-201ENST00000503122 1372 ntBASIC1.8□□□□□ -2.12
SHROOM4Q9ULL8 Y_RNA.242-201ENST00000364473 110 ntBASIC1.8□□□□□ -2.12
SHROOM4Q9ULL8 SNORA80D-201ENST00000384488 135 ntBASIC1.8□□□□□ -2.12
SHROOM4Q9ULL8 MIR15B-201ENST00000385045 98 ntBASIC1.8□□□□□ -2.12
SHROOM4Q9ULL8 SNORA36B-201ENST00000410438 131 ntBASIC1.8□□□□□ -2.12
SHROOM4Q9ULL8 Y_RNA.604-201ENST00000410574 102 ntBASIC1.8□□□□□ -2.12
SHROOM4Q9ULL8 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.8□□□□□ -2.12
SHROOM4Q9ULL8 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.8□□□□□ -2.12
SHROOM4Q9ULL8 AC010487.4-201ENST00000637027 61 ntBASIC1.8□□□□□ -2.12
SHROOM4Q9ULL8 RNU4-80P-201ENST00000363200 141 ntBASIC1.79□□□□□ -2.12
SHROOM4Q9ULL8 RNA5SP62-201ENST00000363457 110 ntBASIC1.79□□□□□ -2.12
SHROOM4Q9ULL8 Y_RNA.148-201ENST00000363557 117 ntBASIC1.79□□□□□ -2.12
SHROOM4Q9ULL8 SNORD14E-201ENST00000364009 85 ntBASIC1.79□□□□□ -2.12
SHROOM4Q9ULL8 Y_RNA.286-201ENST00000364813 102 ntBASIC1.79□□□□□ -2.12
SHROOM4Q9ULL8 MIR520C-201ENST00000385005 87 ntBASIC1.79□□□□□ -2.12
SHROOM4Q9ULL8 MIR516B2-201ENST00000385190 85 ntBASIC1.79□□□□□ -2.12
SHROOM4Q9ULL8 AC010655.3-201ENST00000478818 450 ntBASIC1.79□□□□□ -2.12
SHROOM4Q9ULL8 SNORA40.15-201ENST00000516884 107 ntBASIC1.79□□□□□ -2.12
SHROOM4Q9ULL8 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.79□□□□□ -2.12
SHROOM4Q9ULL8 MIR4300-201ENST00000581016 96 ntBASIC1.79□□□□□ -2.12
SHROOM4Q9ULL8 AC087685.1-201ENST00000587507 141 ntBASIC1.79□□□□□ -2.12
SHROOM4Q9ULL8 RNU6-674P-201ENST00000363831 107 ntBASIC1.78□□□□□ -2.12
SHROOM4Q9ULL8 Y_RNA.258-201ENST00000364613 105 ntBASIC1.78□□□□□ -2.12
SHROOM4Q9ULL8 Y_RNA.569-201ENST00000384749 103 ntBASIC1.78□□□□□ -2.12
SHROOM4Q9ULL8 SNORD12-201ENST00000391002 90 ntBASIC1.78□□□□□ -2.12
SHROOM4Q9ULL8 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.78□□□□□ -2.12
SHROOM4Q9ULL8 MTCO2P12-201ENST00000427426 682 ntBASIC1.78□□□□□ -2.12
SHROOM4Q9ULL8 RNU7-141P-201ENST00000459304 62 ntBASIC1.78□□□□□ -2.12
SHROOM4Q9ULL8 RNU6-1143P-201ENST00000516125 104 ntBASIC1.78□□□□□ -2.12
SHROOM4Q9ULL8 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.78□□□□□ -2.12
SHROOM4Q9ULL8 RNU1-124P-201ENST00000363861 145 ntBASIC1.77□□□□□ -2.13
SHROOM4Q9ULL8 SNORA22B-201ENST00000383876 138 ntBASIC1.77□□□□□ -2.13
SHROOM4Q9ULL8 SNORD38C-201ENST00000384381 69 ntBASIC1.77□□□□□ -2.13
SHROOM4Q9ULL8 AC023449.1-201ENST00000454464 154 ntBASIC1.77□□□□□ -2.13
SHROOM4Q9ULL8 RNU6-437P-201ENST00000459408 95 ntBASIC1.77□□□□□ -2.13
SHROOM4Q9ULL8 HAR1A.1-201ENST00000459583 118 ntBASIC1.77□□□□□ -2.13
SHROOM4Q9ULL8 SNORA74.3-201ENST00000517108 154 ntBASIC1.77□□□□□ -2.13
SHROOM4Q9ULL8 AC090142.3-201ENST00000519012 385 ntBASIC1.77□□□□□ -2.13
SHROOM4Q9ULL8 PRELID3BP2-201ENST00000605362 201 ntBASIC1.77□□□□□ -2.13
SHROOM4Q9ULL8 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.77□□□□□ -2.13
SHROOM4Q9ULL8 Y_RNA.158-201ENST00000363651 101 ntBASIC1.76□□□□□ -2.13
SHROOM4Q9ULL8 RNU6-1209P-201ENST00000363655 107 ntBASIC1.76□□□□□ -2.13
SHROOM4Q9ULL8 RNU6-144P-201ENST00000383951 107 ntBASIC1.76□□□□□ -2.13
SHROOM4Q9ULL8 MIR548P-201ENST00000408336 84 ntBASIC1.76□□□□□ -2.13
SHROOM4Q9ULL8 MTND4LP30-201ENST00000454092 297 ntBASIC1.76□□□□□ -2.13
SHROOM4Q9ULL8 RNA5SP121-201ENST00000516537 101 ntBASIC1.76□□□□□ -2.13
SHROOM4Q9ULL8 RNU6-770P-201ENST00000363929 105 ntBASIC1.75□□□□□ -2.13
SHROOM4Q9ULL8 RNU6-450P-201ENST00000364654 107 ntBASIC1.75□□□□□ -2.13
SHROOM4Q9ULL8 RNU6-442P-201ENST00000383968 104 ntBASIC1.75□□□□□ -2.13
SHROOM4Q9ULL8 MIR802-201ENST00000390235 94 ntBASIC1.75□□□□□ -2.13
SHROOM4Q9ULL8 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.75□□□□□ -2.13
SHROOM4Q9ULL8 SNORD79.1-201ENST00000516069 84 ntBASIC1.75□□□□□ -2.13
SHROOM4Q9ULL8 AC008163.1-202ENST00000636004 2889 ntBASIC1.75□□□□□ -2.13
SHROOM4Q9ULL8 Y_RNA.136-201ENST00000363444 102 ntBASIC1.75□□□□□ -2.13
SHROOM4Q9ULL8 RNU6-899P-201ENST00000363947 107 ntBASIC1.75□□□□□ -2.13
SHROOM4Q9ULL8 Y_RNA.202-201ENST00000364083 110 ntBASIC1.75□□□□□ -2.13
SHROOM4Q9ULL8 SNORA72.4-201ENST00000384174 132 ntBASIC1.75□□□□□ -2.13
SHROOM4Q9ULL8 RN7SKP179-201ENST00000516126 217 ntBASIC1.75□□□□□ -2.13
SHROOM4Q9ULL8 RNU6-496P-201ENST00000516145 99 ntBASIC1.75□□□□□ -2.13
SHROOM4Q9ULL8 RNU6-191P-201ENST00000516295 94 ntBASIC1.75□□□□□ -2.13
SHROOM4Q9ULL8 RNY3P15-201ENST00000516297 97 ntBASIC1.75□□□□□ -2.13
SHROOM4Q9ULL8 RNU6-764P-201ENST00000516396 105 ntBASIC1.75□□□□□ -2.13
SHROOM4Q9ULL8 SNORA18.7-201ENST00000516910 131 ntBASIC1.75□□□□□ -2.13
SHROOM4Q9ULL8 FAM71BP1-201ENST00000604431 523 ntBASIC1.75□□□□□ -2.13
SHROOM4Q9ULL8 RNU6-969P-201ENST00000383900 105 ntBASIC1.74□□□□□ -2.13
SHROOM4Q9ULL8 RNU6-1067P-201ENST00000384752 107 ntBASIC1.74□□□□□ -2.13
SHROOM4Q9ULL8 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.74□□□□□ -2.13
SHROOM4Q9ULL8 SNORD111.1-201ENST00000516421 86 ntBASIC1.74□□□□□ -2.13
SHROOM4Q9ULL8 RNU7-43P-201ENST00000516554 64 ntBASIC1.74□□□□□ -2.13
SHROOM4Q9ULL8 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.74□□□□□ -2.13
SHROOM4Q9ULL8 MIR3171-201ENST00000584270 74 ntBASIC1.74□□□□□ -2.13
SHROOM4Q9ULL8 AL096861.1-201ENST00000610899 123 ntBASIC1.74□□□□□ -2.13
SHROOM4Q9ULL8 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
SHROOM4Q9ULL8 SNORD114-23-201ENST00000363536 72 ntBASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms