Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 MIR181A1-201ENST00000385026 110 ntBASIC0.04□□□□□ -2.4
USP42Q9H9J4 Y_RNA.592-201ENST00000410274 109 ntBASIC0.04□□□□□ -2.4
USP42Q9H9J4 SNORD71-201ENST00000411292 86 ntBASIC0.04□□□□□ -2.4
USP42Q9H9J4 U8.19-201ENST00000459095 133 ntBASIC0.04□□□□□ -2.4
USP42Q9H9J4 MIR2053-201ENST00000459295 91 ntBASIC0.04□□□□□ -2.4
USP42Q9H9J4 AC091959.1-201ENST00000495857 238 ntBASIC0.04□□□□□ -2.4
USP42Q9H9J4 Y_RNA.714-201ENST00000517065 90 ntBASIC0.04□□□□□ -2.4
USP42Q9H9J4 MIR2355-201ENST00000517199 87 ntBASIC0.04□□□□□ -2.4
USP42Q9H9J4 AC026407.1-201ENST00000518369 204 ntBASIC0.04□□□□□ -2.4
USP42Q9H9J4 AC005176.2-201ENST00000596933 147 ntBASIC0.04□□□□□ -2.4
USP42Q9H9J4 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.04□□□□□ -2.4
USP42Q9H9J4 AC011476.5-201ENST00000615594 130 ntBASIC0.04□□□□□ -2.4
USP42Q9H9J4 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.04□□□□□ -2.4
USP42Q9H9J4 SNORD118-201ENST00000363593 134 ntBASIC0.03□□□□□ -2.4
USP42Q9H9J4 RNU6-1209P-201ENST00000363655 107 ntBASIC0.03□□□□□ -2.4
USP42Q9H9J4 Y_RNA.310-201ENST00000365063 113 ntBASIC0.03□□□□□ -2.4
USP42Q9H9J4 RNU6-442P-201ENST00000383968 104 ntBASIC0.03□□□□□ -2.4
USP42Q9H9J4 AL603910.2-201ENST00000407268 136 ntBASIC0.03□□□□□ -2.4
USP42Q9H9J4 SNORD100-201ENST00000408573 76 ntBASIC0.03□□□□□ -2.4
USP42Q9H9J4 RNA5SP118-201ENST00000410385 109 ntBASIC0.03□□□□□ -2.4
USP42Q9H9J4 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC0.03□□□□□ -2.4
USP42Q9H9J4 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC0.03□□□□□ -2.4
USP42Q9H9J4 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.03□□□□□ -2.4
USP42Q9H9J4 MIR4264-201ENST00000583520 66 ntBASIC0.03□□□□□ -2.4
USP42Q9H9J4 POLR3GP1-201ENST00000594073 261 ntBASIC0.03□□□□□ -2.4
USP42Q9H9J4 AP000753.3-201ENST00000604083 169 ntBASIC0.03□□□□□ -2.4
USP42Q9H9J4 RAC1P9-201ENST00000604990 392 ntBASIC0.03□□□□□ -2.4
USP42Q9H9J4 MIR4315-1-201ENST00000636800 73 ntBASIC0.03□□□□□ -2.4
USP42Q9H9J4 MIR4315-2-201ENST00000640925 73 ntBASIC0.03□□□□□ -2.4
USP42Q9H9J4 Y_RNA.9-201ENST00000362354 101 ntBASIC0.02□□□□□ -2.41
USP42Q9H9J4 Y_RNA.88-201ENST00000363029 99 ntBASIC0.02□□□□□ -2.41
USP42Q9H9J4 Y_RNA.194-201ENST00000363985 102 ntBASIC0.02□□□□□ -2.41
USP42Q9H9J4 SNORD72-201ENST00000390994 80 ntBASIC0.02□□□□□ -2.41
USP42Q9H9J4 AL590004.1-201ENST00000405321 300 ntBASIC0.02□□□□□ -2.41
USP42Q9H9J4 AC073261.1-201ENST00000429409 121 ntBASIC0.02□□□□□ -2.41
USP42Q9H9J4 FCF1P4-201ENST00000448326 183 ntBASIC0.02□□□□□ -2.41
USP42Q9H9J4 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC0.02□□□□□ -2.41
USP42Q9H9J4 RNU6-1213P-201ENST00000517075 94 ntBASIC0.02□□□□□ -2.41
USP42Q9H9J4 AC069113.3-201ENST00000521019 150 ntBASIC0.02□□□□□ -2.41
USP42Q9H9J4 AC024405.2-202ENST00000532731 184 ntBASIC0.02□□□□□ -2.41
USP42Q9H9J4 MIR5589-201ENST00000579442 60 ntBASIC0.02□□□□□ -2.41
USP42Q9H9J4 AC008507.4-201ENST00000585464 127 ntBASIC0.02□□□□□ -2.41
USP42Q9H9J4 AP003357.1-201ENST00000604497 148 ntBASIC0.02□□□□□ -2.41
USP42Q9H9J4 uc_338.4-201ENST00000616635 176 ntBASIC0.02□□□□□ -2.41
USP42Q9H9J4 U8.7-201ENST00000364940 136 ntBASIC0.01□□□□□ -2.41
USP42Q9H9J4 SNORA8.2-201ENST00000384372 139 ntBASIC0.01□□□□□ -2.41
USP42Q9H9J4 SNORA75.4-201ENST00000391278 119 ntBASIC0.01□□□□□ -2.41
USP42Q9H9J4 MIR1278-201ENST00000408753 81 ntBASIC0.01□□□□□ -2.41
USP42Q9H9J4 RNU6-855P-201ENST00000410395 104 ntBASIC0.01□□□□□ -2.41
USP42Q9H9J4 MCFD2P1-201ENST00000417812 300 ntBASIC0.01□□□□□ -2.41
USP42Q9H9J4 AF228730.4-201ENST00000421457 183 ntBASIC0.01□□□□□ -2.41
USP42Q9H9J4 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.01□□□□□ -2.41
USP42Q9H9J4 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC0.01□□□□□ -2.41
USP42Q9H9J4 AC090897.1-201ENST00000580909 226 ntBASIC0.01□□□□□ -2.41
USP42Q9H9J4 MIR4802-201ENST00000581881 80 ntBASIC0.01□□□□□ -2.41
USP42Q9H9J4 AC022441.3-201ENST00000605737 136 ntBASIC0.01□□□□□ -2.41
USP42Q9H9J4 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.01□□□□□ -2.41
USP42Q9H9J4 uc_338.16-201ENST00000621804 95 ntBASIC0.01□□□□□ -2.41
USP42Q9H9J4 MIR411-201ENST00000362239 96 ntBASIC0□□□□□ -2.41
USP42Q9H9J4 RNY3P11-201ENST00000364153 102 ntBASIC0□□□□□ -2.41
USP42Q9H9J4 Y_RNA.482-201ENST00000384377 111 ntBASIC0□□□□□ -2.41
USP42Q9H9J4 RNY3P4-201ENST00000384428 101 ntBASIC0□□□□□ -2.41
USP42Q9H9J4 Y_RNA.494-201ENST00000384432 111 ntBASIC0□□□□□ -2.41
USP42Q9H9J4 SNORA69.1-201ENST00000390904 137 ntBASIC0□□□□□ -2.41
USP42Q9H9J4 MIR938-201ENST00000401216 83 ntBASIC0□□□□□ -2.41
USP42Q9H9J4 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0□□□□□ -2.41
USP42Q9H9J4 RNU7-62P-201ENST00000458856 62 ntBASIC0□□□□□ -2.41
USP42Q9H9J4 EIF1P4-201ENST00000572664 335 ntBASIC0□□□□□ -2.41
USP42Q9H9J4 AC005899.2-201ENST00000584353 90 ntBASIC0□□□□□ -2.41
USP42Q9H9J4 AC087685.1-201ENST00000587507 141 ntBASIC0□□□□□ -2.41
USP42Q9H9J4 AC006441.5-201ENST00000612680 209 ntBASIC0□□□□□ -2.41
USP42Q9H9J4 MIR6740-201ENST00000618268 113 ntBASIC0□□□□□ -2.41
USP42Q9H9J4 SNORD114-16-201ENST00000363044 70 ntBASIC-0.01□□□□□ -2.41
USP42Q9H9J4 Y_RNA.341-201ENST00000365341 102 ntBASIC-0.01□□□□□ -2.41
USP42Q9H9J4 RNU6-708P-201ENST00000384217 107 ntBASIC-0.01□□□□□ -2.41
USP42Q9H9J4 RNU6-1156P-201ENST00000410365 100 ntBASIC-0.01□□□□□ -2.41
USP42Q9H9J4 RNU6-847P-201ENST00000411115 108 ntBASIC-0.01□□□□□ -2.41
USP42Q9H9J4 RNU7-102P-201ENST00000458948 62 ntBASIC-0.01□□□□□ -2.41
USP42Q9H9J4 AC091951.2-201ENST00000500762 203 ntBASIC-0.01□□□□□ -2.41
USP42Q9H9J4 RNU6-470P-201ENST00000515954 104 ntBASIC-0.01□□□□□ -2.41
USP42Q9H9J4 SNORA18.4-201ENST00000516440 124 ntBASIC-0.01□□□□□ -2.41
USP42Q9H9J4 RNU7-116P-201ENST00000516940 62 ntBASIC-0.01□□□□□ -2.41
USP42Q9H9J4 AC024909.2-201ENST00000553035 286 ntBASIC-0.01□□□□□ -2.41
USP42Q9H9J4 AC127455.1-201ENST00000565496 145 ntBASIC-0.01□□□□□ -2.41
USP42Q9H9J4 MIR3678-201ENST00000578455 94 ntBASIC-0.01□□□□□ -2.41
USP42Q9H9J4 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC-0.01□□□□□ -2.41
USP42Q9H9J4 JPX_2.1-201ENST00000614161 69 ntBASIC-0.01□□□□□ -2.41
USP42Q9H9J4 AC010332.2-201ENST00000613083 1904 ntBASIC-0.02□□□□□ -2.41
USP42Q9H9J4 Y_RNA.86-201ENST00000363020 111 ntBASIC-0.02□□□□□ -2.41
USP42Q9H9J4 SNORA36.1-201ENST00000363424 132 ntBASIC-0.02□□□□□ -2.41
USP42Q9H9J4 SNORD114-9-201ENST00000364370 72 ntBASIC-0.02□□□□□ -2.41
USP42Q9H9J4 SNORA24-201ENST00000384096 131 ntBASIC-0.02□□□□□ -2.41
USP42Q9H9J4 SNORA75.6-201ENST00000391318 127 ntBASIC-0.02□□□□□ -2.41
USP42Q9H9J4 RNU4-14P-201ENST00000410858 122 ntBASIC-0.02□□□□□ -2.41
USP42Q9H9J4 MTND3P8-201ENST00000412909 339 ntBASIC-0.02□□□□□ -2.41
USP42Q9H9J4 AC107399.1-201ENST00000451226 265 ntBASIC-0.02□□□□□ -2.41
USP42Q9H9J4 RPL23AP54-201ENST00000495129 419 ntBASIC-0.02□□□□□ -2.41
USP42Q9H9J4 RNU7-115P-201ENST00000516433 55 ntBASIC-0.02□□□□□ -2.41
USP42Q9H9J4 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC-0.02□□□□□ -2.41
USP42Q9H9J4 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC-0.02□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms