Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 AC112693.2-201ENST00000556538 232 ntBASIC2.26□□□□□ -2.05
PCIF1Q9H4Z3 MIR3646-201ENST00000578301 84 ntBASIC2.26□□□□□ -2.05
PCIF1Q9H4Z3 MIR548X2-201ENST00000579776 100 ntBASIC2.26□□□□□ -2.05
PCIF1Q9H4Z3 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.26□□□□□ -2.05
PCIF1Q9H4Z3 RNU6-1084P-201ENST00000362498 107 ntBASIC2.25□□□□□ -2.05
PCIF1Q9H4Z3 RNA5SP276-201ENST00000362580 94 ntBASIC2.25□□□□□ -2.05
PCIF1Q9H4Z3 SNORD14E-201ENST00000364009 85 ntBASIC2.25□□□□□ -2.05
PCIF1Q9H4Z3 SNORD50.2-201ENST00000365465 70 ntBASIC2.25□□□□□ -2.05
PCIF1Q9H4Z3 MIR802-201ENST00000390235 94 ntBASIC2.25□□□□□ -2.05
PCIF1Q9H4Z3 U8.16-201ENST00000391279 133 ntBASIC2.25□□□□□ -2.05
PCIF1Q9H4Z3 SNORA75.5-201ENST00000391291 81 ntBASIC2.25□□□□□ -2.05
PCIF1Q9H4Z3 RNU6-588P-201ENST00000410281 105 ntBASIC2.25□□□□□ -2.05
PCIF1Q9H4Z3 SNRPGP14-201ENST00000435400 219 ntBASIC2.25□□□□□ -2.05
PCIF1Q9H4Z3 RNU7-197P-201ENST00000458836 62 ntBASIC2.25□□□□□ -2.05
PCIF1Q9H4Z3 snoU13.27-201ENST00000459278 104 ntBASIC2.25□□□□□ -2.05
PCIF1Q9H4Z3 AC114811.1-201ENST00000507207 168 ntBASIC2.25□□□□□ -2.05
PCIF1Q9H4Z3 RNU6-1270P-201ENST00000517128 108 ntBASIC2.25□□□□□ -2.05
PCIF1Q9H4Z3 IGKV3-31-201ENST00000523109 329 ntBASIC2.25□□□□□ -2.05
PCIF1Q9H4Z3 Y_RNA.343-201ENST00000365354 112 ntBASIC2.24□□□□□ -2.05
PCIF1Q9H4Z3 RNU6-442P-201ENST00000383968 104 ntBASIC2.24□□□□□ -2.05
PCIF1Q9H4Z3 SNORD61-201ENST00000384252 73 ntBASIC2.24□□□□□ -2.05
PCIF1Q9H4Z3 RNU6-424P-201ENST00000384367 105 ntBASIC2.24□□□□□ -2.05
PCIF1Q9H4Z3 Y_RNA.568-201ENST00000384742 113 ntBASIC2.24□□□□□ -2.05
PCIF1Q9H4Z3 AC099513.1-201ENST00000490423 301 ntBASIC2.24□□□□□ -2.05
PCIF1Q9H4Z3 CYCTP-201ENST00000504253 315 ntBASIC2.24□□□□□ -2.05
PCIF1Q9H4Z3 RNU1-41P-201ENST00000516161 162 ntBASIC2.24□□□□□ -2.05
PCIF1Q9H4Z3 RNU1-48P-201ENST00000516400 162 ntBASIC2.24□□□□□ -2.05
PCIF1Q9H4Z3 RNA5SP481-201ENST00000516814 122 ntBASIC2.24□□□□□ -2.05
PCIF1Q9H4Z3 MIR4709-201ENST00000577272 72 ntBASIC2.24□□□□□ -2.05
PCIF1Q9H4Z3 MIR4648-201ENST00000580107 72 ntBASIC2.24□□□□□ -2.05
PCIF1Q9H4Z3 SNRPGP19-201ENST00000603826 189 ntBASIC2.24□□□□□ -2.05
PCIF1Q9H4Z3 AC021506.2-201ENST00000612354 169 ntBASIC2.24□□□□□ -2.05
PCIF1Q9H4Z3 MIR219B-201ENST00000637023 88 ntBASIC2.24□□□□□ -2.05
PCIF1Q9H4Z3 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
PCIF1Q9H4Z3 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.23□□□□□ -2.05
PCIF1Q9H4Z3 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.23□□□□□ -2.05
PCIF1Q9H4Z3 MIR548A2-201ENST00000384956 97 ntBASIC2.23□□□□□ -2.05
PCIF1Q9H4Z3 MIR513C-201ENST00000401352 84 ntBASIC2.23□□□□□ -2.05
PCIF1Q9H4Z3 MIR1261-201ENST00000408659 82 ntBASIC2.23□□□□□ -2.05
PCIF1Q9H4Z3 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.23□□□□□ -2.05
PCIF1Q9H4Z3 TMSB4XP3-201ENST00000445144 114 ntBASIC2.23□□□□□ -2.05
PCIF1Q9H4Z3 AL021397.1-201ENST00000451806 248 ntBASIC2.23□□□□□ -2.05
PCIF1Q9H4Z3 UBL5P3-201ENST00000475112 231 ntBASIC2.23□□□□□ -2.05
PCIF1Q9H4Z3 RNU6-504P-201ENST00000516568 104 ntBASIC2.23□□□□□ -2.05
PCIF1Q9H4Z3 RNA5SP168-201ENST00000516642 112 ntBASIC2.23□□□□□ -2.05
PCIF1Q9H4Z3 RNA5SP82-201ENST00000516707 92 ntBASIC2.23□□□□□ -2.05
PCIF1Q9H4Z3 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.23□□□□□ -2.05
PCIF1Q9H4Z3 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
PCIF1Q9H4Z3 RNU6-888P-201ENST00000363010 101 ntBASIC2.22□□□□□ -2.05
PCIF1Q9H4Z3 SNORA25.7-201ENST00000364375 127 ntBASIC2.22□□□□□ -2.05
PCIF1Q9H4Z3 Y_RNA.242-201ENST00000364473 110 ntBASIC2.22□□□□□ -2.05
PCIF1Q9H4Z3 SNORD24-201ENST00000383884 75 ntBASIC2.22□□□□□ -2.05
PCIF1Q9H4Z3 SNORA1-201ENST00000384107 130 ntBASIC2.22□□□□□ -2.05
PCIF1Q9H4Z3 RNU6-163P-201ENST00000384396 106 ntBASIC2.22□□□□□ -2.05
PCIF1Q9H4Z3 Y_RNA.497-201ENST00000384447 98 ntBASIC2.22□□□□□ -2.05
PCIF1Q9H4Z3 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
PCIF1Q9H4Z3 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.22□□□□□ -2.05
PCIF1Q9H4Z3 SNRPGP13-201ENST00000442212 177 ntBASIC2.22□□□□□ -2.05
PCIF1Q9H4Z3 AC092991.1-201ENST00000477176 376 ntBASIC2.22□□□□□ -2.05
PCIF1Q9H4Z3 AC078899.2-201ENST00000595282 212 ntBASIC2.22□□□□□ -2.05
PCIF1Q9H4Z3 AC006441.5-201ENST00000612680 209 ntBASIC2.22□□□□□ -2.05
PCIF1Q9H4Z3 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.22□□□□□ -2.05
PCIF1Q9H4Z3 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
PCIF1Q9H4Z3 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
PCIF1Q9H4Z3 RNU6-268P-201ENST00000364174 107 ntBASIC2.21□□□□□ -2.06
PCIF1Q9H4Z3 Y_RNA.336-201ENST00000365307 109 ntBASIC2.21□□□□□ -2.06
PCIF1Q9H4Z3 SNORA20-201ENST00000384662 132 ntBASIC2.21□□□□□ -2.06
PCIF1Q9H4Z3 MIR518F-201ENST00000384973 87 ntBASIC2.21□□□□□ -2.06
PCIF1Q9H4Z3 MIR548O-201ENST00000408583 114 ntBASIC2.21□□□□□ -2.06
PCIF1Q9H4Z3 RPL30P13-201ENST00000418873 348 ntBASIC2.21□□□□□ -2.06
PCIF1Q9H4Z3 AL445646.1-201ENST00000431784 216 ntBASIC2.21□□□□□ -2.06
PCIF1Q9H4Z3 HMGN2P32-201ENST00000444648 269 ntBASIC2.21□□□□□ -2.06
PCIF1Q9H4Z3 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC2.21□□□□□ -2.06
PCIF1Q9H4Z3 RNA5SP57-201ENST00000459463 123 ntBASIC2.21□□□□□ -2.06
PCIF1Q9H4Z3 AC079804.2-201ENST00000490376 200 ntBASIC2.21□□□□□ -2.06
PCIF1Q9H4Z3 RNU6-789P-201ENST00000517105 102 ntBASIC2.21□□□□□ -2.06
PCIF1Q9H4Z3 MIR3124-201ENST00000582636 67 ntBASIC2.21□□□□□ -2.06
PCIF1Q9H4Z3 AL365205.2-201ENST00000594586 68 ntBASIC2.21□□□□□ -2.06
PCIF1Q9H4Z3 MIR6715A-201ENST00000615929 79 ntBASIC2.21□□□□□ -2.06
PCIF1Q9H4Z3 AC027279.3-201ENST00000625055 122 ntBASIC2.21□□□□□ -2.06
PCIF1Q9H4Z3 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.21□□□□□ -2.06
PCIF1Q9H4Z3 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.21□□□□□ -2.06
PCIF1Q9H4Z3 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.2□□□□□ -2.06
PCIF1Q9H4Z3 AL157777.2-201ENST00000258070 137 ntBASIC2.2□□□□□ -2.06
PCIF1Q9H4Z3 Y_RNA.251-201ENST00000364551 99 ntBASIC2.2□□□□□ -2.06
PCIF1Q9H4Z3 RNU6-693P-201ENST00000516134 107 ntBASIC2.2□□□□□ -2.06
PCIF1Q9H4Z3 RNU7-25P-201ENST00000516544 62 ntBASIC2.2□□□□□ -2.06
PCIF1Q9H4Z3 MIR5089-201ENST00000580047 84 ntBASIC2.2□□□□□ -2.06
PCIF1Q9H4Z3 MIR3129-201ENST00000581095 76 ntBASIC2.2□□□□□ -2.06
PCIF1Q9H4Z3 AC002984.1-201ENST00000591692 448 ntBASIC2.2□□□□□ -2.06
PCIF1Q9H4Z3 AP001485.1-201ENST00000604799 199 ntBASIC2.2□□□□□ -2.06
PCIF1Q9H4Z3 AP000553.5-201ENST00000641933 54 ntBASIC2.2□□□□□ -2.06
PCIF1Q9H4Z3 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.2□□□□□ -2.06
PCIF1Q9H4Z3 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
PCIF1Q9H4Z3 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
PCIF1Q9H4Z3 Y_RNA.420-201ENST00000384043 110 ntBASIC2.19□□□□□ -2.06
PCIF1Q9H4Z3 MIR144-201ENST00000384886 86 ntBASIC2.19□□□□□ -2.06
PCIF1Q9H4Z3 RNU6-460P-201ENST00000391158 108 ntBASIC2.19□□□□□ -2.06
PCIF1Q9H4Z3 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.19□□□□□ -2.06
PCIF1Q9H4Z3 AC011753.1-201ENST00000451001 220 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms