Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.86□□□□□ -2.27
CDX2Q99626 AC005176.2-201ENST00000596933 147 ntBASIC0.86□□□□□ -2.27
CDX2Q99626 AL513423.1-201ENST00000621695 132 ntBASIC0.86□□□□□ -2.27
CDX2Q99626 AC006435.5-201ENST00000624486 112 ntBASIC0.86□□□□□ -2.27
CDX2Q99626 AC134026.1-201ENST00000623249 2239 ntBASIC0.86□□□□□ -2.27
CDX2Q99626 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
CDX2Q99626 RNU1-124P-201ENST00000363861 145 ntBASIC0.85□□□□□ -2.27
CDX2Q99626 RNU6-801P-201ENST00000364087 105 ntBASIC0.85□□□□□ -2.27
CDX2Q99626 Y_RNA.243-201ENST00000364481 109 ntBASIC0.85□□□□□ -2.27
CDX2Q99626 Y_RNA.307-201ENST00000365022 117 ntBASIC0.85□□□□□ -2.27
CDX2Q99626 Y_RNA.331-201ENST00000365267 102 ntBASIC0.85□□□□□ -2.27
CDX2Q99626 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.85□□□□□ -2.27
CDX2Q99626 Y_RNA.383-201ENST00000383855 97 ntBASIC0.85□□□□□ -2.27
CDX2Q99626 RNU6-662P-201ENST00000384253 104 ntBASIC0.85□□□□□ -2.27
CDX2Q99626 Y_RNA.461-201ENST00000384263 103 ntBASIC0.85□□□□□ -2.27
CDX2Q99626 Y_RNA.539-201ENST00000384635 107 ntBASIC0.85□□□□□ -2.27
CDX2Q99626 Y_RNA.572-201ENST00000384757 98 ntBASIC0.85□□□□□ -2.27
CDX2Q99626 Y_RNA.581-201ENST00000391017 97 ntBASIC0.85□□□□□ -2.27
CDX2Q99626 RNA5SP323-201ENST00000391094 133 ntBASIC0.85□□□□□ -2.27
CDX2Q99626 RNU2-54P-201ENST00000410299 190 ntBASIC0.85□□□□□ -2.27
CDX2Q99626 AC245047.3-201ENST00000429428 127 ntBASIC0.85□□□□□ -2.27
CDX2Q99626 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.85□□□□□ -2.27
CDX2Q99626 AL731563.1-201ENST00000442202 214 ntBASIC0.85□□□□□ -2.27
CDX2Q99626 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.85□□□□□ -2.27
CDX2Q99626 PGBD4P5-201ENST00000445958 426 ntBASIC0.85□□□□□ -2.27
CDX2Q99626 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.85□□□□□ -2.27
CDX2Q99626 Y_RNA.668-201ENST00000516233 93 ntBASIC0.85□□□□□ -2.27
CDX2Q99626 SNORA40.15-201ENST00000516884 107 ntBASIC0.85□□□□□ -2.27
CDX2Q99626 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.85□□□□□ -2.27
CDX2Q99626 AC005828.6-201ENST00000606610 232 ntBASIC0.85□□□□□ -2.27
CDX2Q99626 AC011373.1-201ENST00000607270 237 ntBASIC0.85□□□□□ -2.27
CDX2Q99626 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.85□□□□□ -2.27
CDX2Q99626 MIR410-201ENST00000362222 80 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 RNA5SP347-201ENST00000362445 119 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 Y_RNA.76-201ENST00000362931 109 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 Y_RNA.176-201ENST00000363815 109 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 RNU4-10P-201ENST00000364383 140 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 Y_RNA.361-201ENST00000365515 120 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 RNA5SP259-201ENST00000365541 109 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 VTRNA1-3-201ENST00000365645 89 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 RNU6-1264P-201ENST00000383891 107 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 SNORD63-201ENST00000384262 68 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 RNU6-463P-201ENST00000384340 107 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 SNORA26.5-201ENST00000391215 123 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 AL031003.1-201ENST00000404229 172 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 MIR1278-201ENST00000408753 81 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 RNA5SP511-201ENST00000410487 115 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 MTCO1P5-201ENST00000433573 344 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 SNORD127-201ENST00000458892 86 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 Y_RNA.637-201ENST00000459424 114 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.84□□□□□ -2.27
CDX2Q99626 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.84□□□□□ -2.27
CDX2Q99626 AC074133.1-201ENST00000515696 183 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 RNU6-1338P-201ENST00000516328 91 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 RNA5SP404-201ENST00000517118 132 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 MIR2355-201ENST00000517199 87 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 MIR3128-201ENST00000581957 66 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 MIR3149-201ENST00000584629 83 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 Y_RNA.772-201ENST00000606692 102 ntBASIC0.84□□□□□ -2.27
CDX2Q99626 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.84□□□□□ -2.28
CDX2Q99626 SNORA27.1-201ENST00000362604 124 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 Y_RNA.60-201ENST00000362831 98 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 Y_RNA.149-201ENST00000363558 117 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 Y_RNA.276-201ENST00000364732 109 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 RNU6-740P-201ENST00000364734 105 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 Y_RNA.277-201ENST00000364754 102 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 RNU6-407P-201ENST00000365280 104 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 RNU6-117P-201ENST00000365415 107 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 AC117470.1-201ENST00000381974 330 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 RNU6-196P-201ENST00000384315 107 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 RNU6-440P-201ENST00000390882 105 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 AL603910.2-201ENST00000407268 136 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 RNA5SP475-201ENST00000410568 110 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.83□□□□□ -2.28
CDX2Q99626 TRBVB-201ENST00000477100 408 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 RNU6-191P-201ENST00000516295 94 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 RNY3P16-201ENST00000516338 101 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 RNU6-1337P-201ENST00000516525 95 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 RNA5SP285-201ENST00000516619 119 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 RN7SKP88-201ENST00000516847 250 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 SUMO2P16-201ENST00000519475 264 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 AC103810.9-201ENST00000606688 112 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 7SK.8-201ENST00000612110 250 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 7SK.11-201ENST00000615477 250 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 7SK.10-201ENST00000621414 298 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 7SK.13-201ENST00000622040 250 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 AC243829.3-201ENST00000622177 108 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 AC127459.3-201ENST00000624328 466 ntBASIC0.83□□□□□ -2.28
CDX2Q99626 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.83□□□□□ -2.28
CDX2Q99626 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.82□□□□□ -2.28
CDX2Q99626 AL391516.1-201ENST00000554380 2449 ntBASIC0.82□□□□□ -2.28
CDX2Q99626 RNU5F-3P-201ENST00000363767 117 ntBASIC0.82□□□□□ -2.28
CDX2Q99626 RNU6-324P-201ENST00000363957 106 ntBASIC0.82□□□□□ -2.28
CDX2Q99626 SNORD27-201ENST00000363981 72 ntBASIC0.82□□□□□ -2.28
CDX2Q99626 U8.7-201ENST00000364940 136 ntBASIC0.82□□□□□ -2.28
CDX2Q99626 Y_RNA.447-201ENST00000384184 113 ntBASIC0.82□□□□□ -2.28
CDX2Q99626 Y_RNA.462-201ENST00000384268 102 ntBASIC0.82□□□□□ -2.28
CDX2Q99626 Y_RNA.569-201ENST00000384749 103 ntBASIC0.82□□□□□ -2.28
CDX2Q99626 MIR660-201ENST00000385235 97 ntBASIC0.82□□□□□ -2.28
CDX2Q99626 MIR653-201ENST00000385279 96 ntBASIC0.82□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms