Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 PIGPP3-201ENST00000425307 415 ntBASIC1.36□□□□□ -2.19
USP28Q96RU2 NDUFA4P2-201ENST00000489989 244 ntBASIC1.36□□□□□ -2.19
USP28Q96RU2 HMGN1P7-201ENST00000491722 313 ntBASIC1.36□□□□□ -2.19
USP28Q96RU2 RNA5SP168-201ENST00000516642 112 ntBASIC1.36□□□□□ -2.19
USP28Q96RU2 AL358944.1-201ENST00000528537 144 ntBASIC1.36□□□□□ -2.19
USP28Q96RU2 RPL23AP91-201ENST00000569211 455 ntBASIC1.36□□□□□ -2.19
USP28Q96RU2 AL512598.1-201ENST00000610158 273 ntBASIC1.36□□□□□ -2.19
USP28Q96RU2 Y_RNA.24-201ENST00000362508 103 ntBASIC1.35□□□□□ -2.19
USP28Q96RU2 SNORD33-201ENST00000362761 85 ntBASIC1.35□□□□□ -2.19
USP28Q96RU2 snoU2_19.4-201ENST00000364329 80 ntBASIC1.35□□□□□ -2.19
USP28Q96RU2 RNU6-969P-201ENST00000383900 105 ntBASIC1.35□□□□□ -2.19
USP28Q96RU2 MIR522-201ENST00000385071 87 ntBASIC1.35□□□□□ -2.19
USP28Q96RU2 RNU11-5P-201ENST00000391216 129 ntBASIC1.35□□□□□ -2.19
USP28Q96RU2 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.35□□□□□ -2.19
USP28Q96RU2 AL034345.1-201ENST00000407768 123 ntBASIC1.35□□□□□ -2.19
USP28Q96RU2 SNRPGP10-201ENST00000432323 225 ntBASIC1.35□□□□□ -2.19
USP28Q96RU2 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.35□□□□□ -2.19
USP28Q96RU2 PGBD4P5-201ENST00000445958 426 ntBASIC1.35□□□□□ -2.19
USP28Q96RU2 snoU13.23-201ENST00000458863 104 ntBASIC1.35□□□□□ -2.19
USP28Q96RU2 SNORD11-201ENST00000459124 84 ntBASIC1.35□□□□□ -2.19
USP28Q96RU2 AC073349.3-201ENST00000617616 186 ntBASIC1.35□□□□□ -2.19
USP28Q96RU2 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
USP28Q96RU2 RNU6-674P-201ENST00000363831 107 ntBASIC1.34□□□□□ -2.19
USP28Q96RU2 SNORD50B-201ENST00000364995 70 ntBASIC1.34□□□□□ -2.19
USP28Q96RU2 Y_RNA.304-201ENST00000365011 112 ntBASIC1.34□□□□□ -2.19
USP28Q96RU2 RNY4P28-201ENST00000365281 93 ntBASIC1.34□□□□□ -2.19
USP28Q96RU2 MIR562-201ENST00000384894 95 ntBASIC1.34□□□□□ -2.19
USP28Q96RU2 RNA5SP482-201ENST00000391269 118 ntBASIC1.34□□□□□ -2.19
USP28Q96RU2 Y_RNA.618-201ENST00000410949 107 ntBASIC1.34□□□□□ -2.19
USP28Q96RU2 AC108667.1-201ENST00000428618 249 ntBASIC1.34□□□□□ -2.19
USP28Q96RU2 RNU6-453P-201ENST00000516819 85 ntBASIC1.34□□□□□ -2.19
USP28Q96RU2 SUMO2P16-201ENST00000519475 264 ntBASIC1.34□□□□□ -2.19
USP28Q96RU2 AC015712.3-201ENST00000559380 164 ntBASIC1.34□□□□□ -2.19
USP28Q96RU2 MIR3124-201ENST00000582636 67 ntBASIC1.34□□□□□ -2.19
USP28Q96RU2 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.33□□□□□ -2.2
USP28Q96RU2 MIR367-201ENST00000362299 68 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 SNORA7.1-201ENST00000363750 139 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 RNU6-923P-201ENST00000364753 107 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 Y_RNA.308-201ENST00000365043 101 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 Y_RNA.478-201ENST00000384358 107 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 RNU6-950P-201ENST00000384651 107 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 MIR626-201ENST00000385032 94 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 MT-TG-201ENST00000387429 68 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 MT-TT-201ENST00000387460 66 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 SNORD72-201ENST00000390994 80 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 RNU6ATAC23P-201ENST00000408448 123 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 Y_RNA.626-201ENST00000411288 95 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 AC004965.1-201ENST00000413033 213 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.33□□□□□ -2.2
USP28Q96RU2 AC114811.1-201ENST00000507207 168 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 SCARNA8-201ENST00000515924 131 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 AC130289.1-201ENST00000577321 73 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 MIR4724-201ENST00000579485 89 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 AL049861.1-201ENST00000603130 150 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 SNORA28-201ENST00000606769 126 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 AL021707.8-201ENST00000609428 183 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 Y_RNA.802-201ENST00000614892 130 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 AC106754.2-201ENST00000623006 233 ntBASIC1.33□□□□□ -2.2
USP28Q96RU2 Y_RNA.229-201ENST00000364347 113 ntBASIC1.32□□□□□ -2.2
USP28Q96RU2 U8.5-201ENST00000364528 136 ntBASIC1.32□□□□□ -2.2
USP28Q96RU2 RNU6-144P-201ENST00000383951 107 ntBASIC1.32□□□□□ -2.2
USP28Q96RU2 Y_RNA.489-201ENST00000384410 101 ntBASIC1.32□□□□□ -2.2
USP28Q96RU2 RNU6-493P-201ENST00000391321 108 ntBASIC1.32□□□□□ -2.2
USP28Q96RU2 MIR1298-201ENST00000408783 112 ntBASIC1.32□□□□□ -2.2
USP28Q96RU2 AC245047.8-201ENST00000456455 284 ntBASIC1.32□□□□□ -2.2
USP28Q96RU2 AC079140.2-201ENST00000506193 142 ntBASIC1.32□□□□□ -2.2
USP28Q96RU2 RN7SKP179-201ENST00000516126 217 ntBASIC1.32□□□□□ -2.2
USP28Q96RU2 RNU7-28P-201ENST00000516759 62 ntBASIC1.32□□□□□ -2.2
USP28Q96RU2 MIR4762-201ENST00000585261 75 ntBASIC1.32□□□□□ -2.2
USP28Q96RU2 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
USP28Q96RU2 AC120024.3-201ENST00000603167 156 ntBASIC1.32□□□□□ -2.2
USP28Q96RU2 JPX_2.1-201ENST00000614161 69 ntBASIC1.32□□□□□ -2.2
USP28Q96RU2 SNORD3E-202ENST00000627253 216 ntBASIC1.32□□□□□ -2.2
USP28Q96RU2 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.31□□□□□ -2.2
USP28Q96RU2 RNY1-201ENST00000364228 113 ntBASIC1.31□□□□□ -2.2
USP28Q96RU2 Y_RNA.274-201ENST00000364714 101 ntBASIC1.31□□□□□ -2.2
USP28Q96RU2 Y_RNA.476-201ENST00000384347 108 ntBASIC1.31□□□□□ -2.2
USP28Q96RU2 SNORA8.3-201ENST00000384679 139 ntBASIC1.31□□□□□ -2.2
USP28Q96RU2 MIR660-201ENST00000385235 97 ntBASIC1.31□□□□□ -2.2
USP28Q96RU2 MIR526A2-201ENST00000390198 65 ntBASIC1.31□□□□□ -2.2
USP28Q96RU2 RNU6-131P-201ENST00000391144 107 ntBASIC1.31□□□□□ -2.2
USP28Q96RU2 AL591704.2-201ENST00000421658 181 ntBASIC1.31□□□□□ -2.2
USP28Q96RU2 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.31□□□□□ -2.2
USP28Q96RU2 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.31□□□□□ -2.2
USP28Q96RU2 AC108210.2-201ENST00000503681 201 ntBASIC1.31□□□□□ -2.2
USP28Q96RU2 RNU7-12P-201ENST00000516030 62 ntBASIC1.31□□□□□ -2.2
USP28Q96RU2 RNU4-71P-201ENST00000516258 113 ntBASIC1.31□□□□□ -2.2
USP28Q96RU2 AC015688.6-201ENST00000577737 104 ntBASIC1.31□□□□□ -2.2
USP28Q96RU2 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.31□□□□□ -2.2
USP28Q96RU2 MIR3937-201ENST00000580135 106 ntBASIC1.31□□□□□ -2.2
USP28Q96RU2 MIR4308-201ENST00000580634 81 ntBASIC1.31□□□□□ -2.2
USP28Q96RU2 AL513423.1-201ENST00000621695 132 ntBASIC1.31□□□□□ -2.2
USP28Q96RU2 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
USP28Q96RU2 MIR302D-201ENST00000362275 68 ntBASIC1.3□□□□□ -2.2
USP28Q96RU2 SNORD1A-201ENST00000364968 72 ntBASIC1.3□□□□□ -2.2
USP28Q96RU2 RNA5SP259-201ENST00000365541 109 ntBASIC1.3□□□□□ -2.2
USP28Q96RU2 RNU6-163P-201ENST00000384396 106 ntBASIC1.3□□□□□ -2.2
USP28Q96RU2 MIR526A1-201ENST00000384897 85 ntBASIC1.3□□□□□ -2.2
USP28Q96RU2 MIR513A1-201ENST00000385138 129 ntBASIC1.3□□□□□ -2.2
USP28Q96RU2 RNU6-381P-201ENST00000391259 108 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms