Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 SNORA70.24-201ENST00000517233 118 ntBASIC1.96□□□□□ -2.1
CLRN3Q8NCR9 AC090049.2-201ENST00000550377 109 ntBASIC1.96□□□□□ -2.1
CLRN3Q8NCR9 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.96□□□□□ -2.1
CLRN3Q8NCR9 MIR4325-201ENST00000583049 90 ntBASIC1.96□□□□□ -2.1
CLRN3Q8NCR9 FAM106DP-201ENST00000586416 501 ntBASIC1.96□□□□□ -2.1
CLRN3Q8NCR9 AC106754.2-201ENST00000623006 233 ntBASIC1.96□□□□□ -2.1
CLRN3Q8NCR9 WWP1P1-201ENST00000466609 2769 ntBASIC1.95□□□□□ -2.1
CLRN3Q8NCR9 SNORD33-201ENST00000362761 85 ntBASIC1.95□□□□□ -2.1
CLRN3Q8NCR9 SNORA1.2-201ENST00000365189 134 ntBASIC1.95□□□□□ -2.1
CLRN3Q8NCR9 MIR526A1-201ENST00000384897 85 ntBASIC1.95□□□□□ -2.1
CLRN3Q8NCR9 MIR624-201ENST00000385217 97 ntBASIC1.95□□□□□ -2.1
CLRN3Q8NCR9 MIR653-201ENST00000385279 96 ntBASIC1.95□□□□□ -2.1
CLRN3Q8NCR9 RNA5SP338-201ENST00000410495 85 ntBASIC1.95□□□□□ -2.1
CLRN3Q8NCR9 RNA5SP489-201ENST00000410986 109 ntBASIC1.95□□□□□ -2.1
CLRN3Q8NCR9 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC1.95□□□□□ -2.1
CLRN3Q8NCR9 AC008885.1-201ENST00000514930 301 ntBASIC1.95□□□□□ -2.1
CLRN3Q8NCR9 RNA5SP364-201ENST00000516938 78 ntBASIC1.95□□□□□ -2.1
CLRN3Q8NCR9 RN7SKP57-201ENST00000517248 293 ntBASIC1.95□□□□□ -2.1
CLRN3Q8NCR9 MTND5P41-201ENST00000517498 206 ntBASIC1.95□□□□□ -2.1
CLRN3Q8NCR9 MIR3129-201ENST00000581095 76 ntBASIC1.95□□□□□ -2.1
CLRN3Q8NCR9 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC1.95□□□□□ -2.1
CLRN3Q8NCR9 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
CLRN3Q8NCR9 Y_RNA.37-201ENST00000362606 108 ntBASIC1.94□□□□□ -2.1
CLRN3Q8NCR9 RNU6-818P-201ENST00000364837 108 ntBASIC1.94□□□□□ -2.1
CLRN3Q8NCR9 RNU4-11P-201ENST00000365287 132 ntBASIC1.94□□□□□ -2.1
CLRN3Q8NCR9 SNORA1-201ENST00000384107 130 ntBASIC1.94□□□□□ -2.1
CLRN3Q8NCR9 RNU6-746P-201ENST00000384112 109 ntBASIC1.94□□□□□ -2.1
CLRN3Q8NCR9 MIR513C-201ENST00000401352 84 ntBASIC1.94□□□□□ -2.1
CLRN3Q8NCR9 MIR548M-201ENST00000408260 86 ntBASIC1.94□□□□□ -2.1
CLRN3Q8NCR9 UBE2Q2P12-201ENST00000414573 204 ntBASIC1.94□□□□□ -2.1
CLRN3Q8NCR9 HSPE1P24-201ENST00000450782 238 ntBASIC1.94□□□□□ -2.1
CLRN3Q8NCR9 RNU4-57P-201ENST00000515980 135 ntBASIC1.94□□□□□ -2.1
CLRN3Q8NCR9 Y_RNA.703-201ENST00000516846 111 ntBASIC1.94□□□□□ -2.1
CLRN3Q8NCR9 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC1.94□□□□□ -2.1
CLRN3Q8NCR9 MIR8063-201ENST00000621930 81 ntBASIC1.94□□□□□ -2.1
CLRN3Q8NCR9 MIR3658-201ENST00000636291 56 ntBASIC1.94□□□□□ -2.1
CLRN3Q8NCR9 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
CLRN3Q8NCR9 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
CLRN3Q8NCR9 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
CLRN3Q8NCR9 RNA5SP374-201ENST00000362939 125 ntBASIC1.93□□□□□ -2.1
CLRN3Q8NCR9 AL451046.2-201ENST00000403074 277 ntBASIC1.93□□□□□ -2.1
CLRN3Q8NCR9 AL603908.1-201ENST00000406098 201 ntBASIC1.93□□□□□ -2.1
CLRN3Q8NCR9 AC008834.1-201ENST00000511612 175 ntBASIC1.93□□□□□ -2.1
CLRN3Q8NCR9 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.93□□□□□ -2.1
CLRN3Q8NCR9 RNA5SP341-201ENST00000516261 117 ntBASIC1.93□□□□□ -2.1
CLRN3Q8NCR9 RNU6-917P-201ENST00000516294 104 ntBASIC1.93□□□□□ -2.1
CLRN3Q8NCR9 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.93□□□□□ -2.1
CLRN3Q8NCR9 AC112693.2-201ENST00000556538 232 ntBASIC1.93□□□□□ -2.1
CLRN3Q8NCR9 RNU6-1189P-201ENST00000383958 107 ntBASIC1.92□□□□□ -2.1
CLRN3Q8NCR9 U8.17-201ENST00000391292 132 ntBASIC1.92□□□□□ -2.1
CLRN3Q8NCR9 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.92□□□□□ -2.1
CLRN3Q8NCR9 AF228730.3-201ENST00000436691 102 ntBASIC1.92□□□□□ -2.1
CLRN3Q8NCR9 AC092991.1-201ENST00000477176 376 ntBASIC1.92□□□□□ -2.1
CLRN3Q8NCR9 RN7SKP132-201ENST00000516001 208 ntBASIC1.92□□□□□ -2.1
CLRN3Q8NCR9 AL513534.2-201ENST00000603836 250 ntBASIC1.92□□□□□ -2.1
CLRN3Q8NCR9 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.92□□□□□ -2.1
CLRN3Q8NCR9 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CLRN3Q8NCR9 AL365361.1-201ENST00000566942 3481 ntBASIC1.92□□□□□ -2.1
CLRN3Q8NCR9 RNA5SP68-201ENST00000363885 119 ntBASIC1.91□□□□□ -2.1
CLRN3Q8NCR9 Y_RNA.215-201ENST00000364204 112 ntBASIC1.91□□□□□ -2.1
CLRN3Q8NCR9 Y_RNA.506-201ENST00000384494 102 ntBASIC1.91□□□□□ -2.1
CLRN3Q8NCR9 MIR491-201ENST00000384877 84 ntBASIC1.91□□□□□ -2.1
CLRN3Q8NCR9 AC107297.1-201ENST00000459991 176 ntBASIC1.91□□□□□ -2.1
CLRN3Q8NCR9 S100A11P2-201ENST00000467589 312 ntBASIC1.91□□□□□ -2.1
CLRN3Q8NCR9 AC005908.1-201ENST00000468701 347 ntBASIC1.91□□□□□ -2.1
CLRN3Q8NCR9 AP003484.1-201ENST00000530974 250 ntBASIC1.91□□□□□ -2.1
CLRN3Q8NCR9 AC074050.1-201ENST00000563247 211 ntBASIC1.91□□□□□ -2.1
CLRN3Q8NCR9 MIR548X2-201ENST00000579776 100 ntBASIC1.91□□□□□ -2.1
CLRN3Q8NCR9 RNU6-1082P-201ENST00000364574 107 ntBASIC1.9□□□□□ -2.11
CLRN3Q8NCR9 Y_RNA.343-201ENST00000365354 112 ntBASIC1.9□□□□□ -2.11
CLRN3Q8NCR9 Y_RNA.488-201ENST00000384403 102 ntBASIC1.9□□□□□ -2.11
CLRN3Q8NCR9 RNU6-1067P-201ENST00000384752 107 ntBASIC1.9□□□□□ -2.11
CLRN3Q8NCR9 SNORD77.3-201ENST00000391113 65 ntBASIC1.9□□□□□ -2.11
CLRN3Q8NCR9 RNU6-588P-201ENST00000410281 105 ntBASIC1.9□□□□□ -2.11
CLRN3Q8NCR9 Z92545.1-201ENST00000411782 234 ntBASIC1.9□□□□□ -2.11
CLRN3Q8NCR9 EEF1A1P41-201ENST00000414667 207 ntBASIC1.9□□□□□ -2.11
CLRN3Q8NCR9 SNORD123-201ENST00000459473 70 ntBASIC1.9□□□□□ -2.11
CLRN3Q8NCR9 AC079140.2-201ENST00000506193 142 ntBASIC1.9□□□□□ -2.11
CLRN3Q8NCR9 SNORA18.7-201ENST00000516910 131 ntBASIC1.9□□□□□ -2.11
CLRN3Q8NCR9 SNORA74.3-201ENST00000517108 154 ntBASIC1.9□□□□□ -2.11
CLRN3Q8NCR9 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.9□□□□□ -2.11
CLRN3Q8NCR9 MIR5197-201ENST00000583721 112 ntBASIC1.9□□□□□ -2.11
CLRN3Q8NCR9 AC131055.1-201ENST00000584626 316 ntBASIC1.9□□□□□ -2.11
CLRN3Q8NCR9 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.9□□□□□ -2.11
CLRN3Q8NCR9 MIR302D-201ENST00000362275 68 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORD115-34-201ENST00000362441 82 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORD115-12-201ENST00000362583 82 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORD115-29-201ENST00000362834 82 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORD115-9-201ENST00000362912 82 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORD115-21-201ENST00000362963 81 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORD115-14-201ENST00000363090 81 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORD115-13-201ENST00000363358 82 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORD115-41-201ENST00000363608 82 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORD115-11-201ENST00000363616 82 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORD115-5-201ENST00000363633 82 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORD115-39-201ENST00000363694 82 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORD115-4-201ENST00000363810 82 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORD115-16-201ENST00000363887 82 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 SNORD115-6-201ENST00000363942 82 ntBASIC1.89□□□□□ -2.11
CLRN3Q8NCR9 RNA5SP456-201ENST00000364002 114 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms