Protein–RNA interactions for Protein: Q6NX49

ZNF544, Zinc finger protein 544, humanhuman

Predictions only

Length 715 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF544Q6NX49 MIR5688-201ENST00000580619 83 ntBASIC1.07□□□□□ -2.24
ZNF544Q6NX49 MIR4282-201ENST00000583613 67 ntBASIC1.07□□□□□ -2.24
ZNF544Q6NX49 AL162730.1-201ENST00000605734 292 ntBASIC1.07□□□□□ -2.24
ZNF544Q6NX49 AL008718.3-201ENST00000610217 321 ntBASIC1.07□□□□□ -2.24
ZNF544Q6NX49 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.07□□□□□ -2.24
ZNF544Q6NX49 AC068700.1-201ENST00000565862 3754 ntBASIC1.06□□□□□ -2.24
ZNF544Q6NX49 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.06□□□□□ -2.24
ZNF544Q6NX49 Y_RNA.352-201ENST00000365439 102 ntBASIC1.06□□□□□ -2.24
ZNF544Q6NX49 SNORA22-201ENST00000383907 134 ntBASIC1.06□□□□□ -2.24
ZNF544Q6NX49 RNU6-662P-201ENST00000384253 104 ntBASIC1.06□□□□□ -2.24
ZNF544Q6NX49 SNORA22C-201ENST00000384614 134 ntBASIC1.06□□□□□ -2.24
ZNF544Q6NX49 MIR653-201ENST00000385279 96 ntBASIC1.06□□□□□ -2.24
ZNF544Q6NX49 SNORD58.1-201ENST00000391313 66 ntBASIC1.06□□□□□ -2.24
ZNF544Q6NX49 AL591704.2-201ENST00000421658 181 ntBASIC1.06□□□□□ -2.24
ZNF544Q6NX49 BTF3P11-201ENST00000426582 477 ntBASIC1.06□□□□□ -2.24
ZNF544Q6NX49 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.06□□□□□ -2.24
ZNF544Q6NX49 SCARNA24.2-201ENST00000516968 130 ntBASIC1.06□□□□□ -2.24
ZNF544Q6NX49 MIR5692C2-201ENST00000577959 77 ntBASIC1.06□□□□□ -2.24
ZNF544Q6NX49 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.06□□□□□ -2.24
ZNF544Q6NX49 AC087685.1-201ENST00000587507 141 ntBASIC1.06□□□□□ -2.24
ZNF544Q6NX49 AC012433.1-201ENST00000588916 398 ntBASIC1.06□□□□□ -2.24
ZNF544Q6NX49 AC120024.3-201ENST00000603167 156 ntBASIC1.06□□□□□ -2.24
ZNF544Q6NX49 AL021707.8-201ENST00000609428 183 ntBASIC1.06□□□□□ -2.24
ZNF544Q6NX49 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.06□□□□□ -2.24
ZNF544Q6NX49 SNORD3E-202ENST00000627253 216 ntBASIC1.06□□□□□ -2.24
ZNF544Q6NX49 snoU18.1-201ENST00000629629 71 ntBASIC1.06□□□□□ -2.24
ZNF544Q6NX49 SNORA25.8-201ENST00000364831 128 ntBASIC1.05□□□□□ -2.24
ZNF544Q6NX49 Y_RNA.288-201ENST00000364854 92 ntBASIC1.05□□□□□ -2.24
ZNF544Q6NX49 RNU6-1289P-201ENST00000384431 106 ntBASIC1.05□□□□□ -2.24
ZNF544Q6NX49 MIR526A2-201ENST00000390198 65 ntBASIC1.05□□□□□ -2.24
ZNF544Q6NX49 MTCO2P33-201ENST00000402100 465 ntBASIC1.05□□□□□ -2.24
ZNF544Q6NX49 Y_RNA.621-201ENST00000411065 96 ntBASIC1.05□□□□□ -2.24
ZNF544Q6NX49 SNORD11-201ENST00000459124 84 ntBASIC1.05□□□□□ -2.24
ZNF544Q6NX49 RPL39P38-201ENST00000467018 153 ntBASIC1.05□□□□□ -2.24
ZNF544Q6NX49 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.05□□□□□ -2.24
ZNF544Q6NX49 MIR2681-201ENST00000581814 105 ntBASIC1.05□□□□□ -2.24
ZNF544Q6NX49 MIR4295-201ENST00000585286 85 ntBASIC1.05□□□□□ -2.24
ZNF544Q6NX49 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.05□□□□□ -2.24
ZNF544Q6NX49 Y_RNA.14-201ENST00000362415 103 ntBASIC1.04□□□□□ -2.24
ZNF544Q6NX49 RNU6-1205P-201ENST00000363625 106 ntBASIC1.04□□□□□ -2.24
ZNF544Q6NX49 RNU6-1209P-201ENST00000363655 107 ntBASIC1.04□□□□□ -2.24
ZNF544Q6NX49 RNU6-740P-201ENST00000364734 105 ntBASIC1.04□□□□□ -2.24
ZNF544Q6NX49 RNU6-53P-201ENST00000365367 106 ntBASIC1.04□□□□□ -2.24
ZNF544Q6NX49 Y_RNA.452-201ENST00000384202 108 ntBASIC1.04□□□□□ -2.24
ZNF544Q6NX49 MIR1276-201ENST00000408707 83 ntBASIC1.04□□□□□ -2.24
ZNF544Q6NX49 MIR1278-201ENST00000408753 81 ntBASIC1.04□□□□□ -2.24
ZNF544Q6NX49 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.04□□□□□ -2.24
ZNF544Q6NX49 SNRPGP10-201ENST00000432323 225 ntBASIC1.04□□□□□ -2.24
ZNF544Q6NX49 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.04□□□□□ -2.24
ZNF544Q6NX49 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.04□□□□□ -2.24
ZNF544Q6NX49 AC079140.2-201ENST00000506193 142 ntBASIC1.04□□□□□ -2.24
ZNF544Q6NX49 Y_RNA.673-201ENST00000516306 88 ntBASIC1.04□□□□□ -2.24
ZNF544Q6NX49 MIR4503-201ENST00000582187 83 ntBASIC1.04□□□□□ -2.24
ZNF544Q6NX49 MIR6504-201ENST00000613520 61 ntBASIC1.04□□□□□ -2.24
ZNF544Q6NX49 U4.1-201ENST00000620349 87 ntBASIC1.04□□□□□ -2.24
ZNF544Q6NX49 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.04□□□□□ -2.24
ZNF544Q6NX49 AL121890.5-201ENST00000620848 304 ntBASIC1.04□□□□□ -2.24
ZNF544Q6NX49 MIR8063-201ENST00000621930 81 ntBASIC1.04□□□□□ -2.24
ZNF544Q6NX49 AC134026.1-201ENST00000623249 2239 ntBASIC1.03□□□□□ -2.24
ZNF544Q6NX49 RNU6-199P-201ENST00000362954 107 ntBASIC1.03□□□□□ -2.24
ZNF544Q6NX49 SNORD68-201ENST00000363214 84 ntBASIC1.03□□□□□ -2.24
ZNF544Q6NX49 RNU6-211P-201ENST00000384047 107 ntBASIC1.03□□□□□ -2.24
ZNF544Q6NX49 RNU6-196P-201ENST00000384315 107 ntBASIC1.03□□□□□ -2.24
ZNF544Q6NX49 RNU6-463P-201ENST00000384340 107 ntBASIC1.03□□□□□ -2.24
ZNF544Q6NX49 RNU6-131P-201ENST00000391144 107 ntBASIC1.03□□□□□ -2.24
ZNF544Q6NX49 MIR891A-201ENST00000401237 79 ntBASIC1.03□□□□□ -2.24
ZNF544Q6NX49 MIR548H3-201ENST00000408771 118 ntBASIC1.03□□□□□ -2.24
ZNF544Q6NX49 RNU2-38P-201ENST00000410856 79 ntBASIC1.03□□□□□ -2.24
ZNF544Q6NX49 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.03□□□□□ -2.24
ZNF544Q6NX49 RPS29P29-201ENST00000456396 171 ntBASIC1.03□□□□□ -2.24
ZNF544Q6NX49 RNU6-1132P-201ENST00000459214 107 ntBASIC1.03□□□□□ -2.24
ZNF544Q6NX49 NDUFA4P2-201ENST00000489989 244 ntBASIC1.03□□□□□ -2.24
ZNF544Q6NX49 RNU7-12P-201ENST00000516030 62 ntBASIC1.03□□□□□ -2.24
ZNF544Q6NX49 Y_RNA.714-201ENST00000517065 90 ntBASIC1.03□□□□□ -2.24
ZNF544Q6NX49 SUMO2P16-201ENST00000519475 264 ntBASIC1.03□□□□□ -2.24
ZNF544Q6NX49 AC090049.2-201ENST00000550377 109 ntBASIC1.03□□□□□ -2.24
ZNF544Q6NX49 AC103810.9-201ENST00000606688 112 ntBASIC1.03□□□□□ -2.24
ZNF544Q6NX49 JPX_2.1-201ENST00000614161 69 ntBASIC1.03□□□□□ -2.24
ZNF544Q6NX49 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.03□□□□□ -2.25
ZNF544Q6NX49 Y_RNA.117-201ENST00000363294 101 ntBASIC1.02□□□□□ -2.25
ZNF544Q6NX49 Y_RNA.122-201ENST00000363331 96 ntBASIC1.02□□□□□ -2.25
ZNF544Q6NX49 Y_RNA.144-201ENST00000363521 113 ntBASIC1.02□□□□□ -2.25
ZNF544Q6NX49 Y_RNA.193-201ENST00000363979 102 ntBASIC1.02□□□□□ -2.25
ZNF544Q6NX49 SNORD50B-201ENST00000364995 70 ntBASIC1.02□□□□□ -2.25
ZNF544Q6NX49 Y_RNA.336-201ENST00000365307 109 ntBASIC1.02□□□□□ -2.25
ZNF544Q6NX49 SNORA2.2-201ENST00000365473 135 ntBASIC1.02□□□□□ -2.25
ZNF544Q6NX49 RNA5SP259-201ENST00000365541 109 ntBASIC1.02□□□□□ -2.25
ZNF544Q6NX49 snosnR66.1-201ENST00000391095 99 ntBASIC1.02□□□□□ -2.25
ZNF544Q6NX49 RNA5SP496-201ENST00000391240 109 ntBASIC1.02□□□□□ -2.25
ZNF544Q6NX49 AL603910.2-201ENST00000407268 136 ntBASIC1.02□□□□□ -2.25
ZNF544Q6NX49 RPS27P16-201ENST00000425758 201 ntBASIC1.02□□□□□ -2.25
ZNF544Q6NX49 HMGN2P32-201ENST00000444648 269 ntBASIC1.02□□□□□ -2.25
ZNF544Q6NX49 AC092991.1-201ENST00000477176 376 ntBASIC1.02□□□□□ -2.25
ZNF544Q6NX49 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.02□□□□□ -2.25
ZNF544Q6NX49 AC114811.1-201ENST00000507207 168 ntBASIC1.02□□□□□ -2.25
ZNF544Q6NX49 MTND1P19-201ENST00000511780 315 ntBASIC1.02□□□□□ -2.25
ZNF544Q6NX49 RNA5SP102-201ENST00000516865 106 ntBASIC1.02□□□□□ -2.25
ZNF544Q6NX49 RNU6-1116P-201ENST00000517269 99 ntBASIC1.02□□□□□ -2.25
ZNF544Q6NX49 AC019176.1-201ENST00000518519 225 ntBASIC1.02□□□□□ -2.25
ZNF544Q6NX49 AC100767.1-201ENST00000528178 123 ntBASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 171.7 ms