Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MTCO2P30-201ENST00000503662 364 ntBASIC-0.57□□□□□ -2.5
CHD9Q3L8U1 AP003072.1-201ENST00000531740 145 ntBASIC-0.57□□□□□ -2.5
CHD9Q3L8U1 AC090616.2-202ENST00000584248 222 ntBASIC-0.57□□□□□ -2.5
CHD9Q3L8U1 AL445584.3-201ENST00000617173 78 ntBASIC-0.57□□□□□ -2.5
CHD9Q3L8U1 AL589826.1-201ENST00000340697 249 ntBASIC-0.57□□□□□ -2.5
CHD9Q3L8U1 SNORD114-29-201ENST00000364819 70 ntBASIC-0.57□□□□□ -2.5
CHD9Q3L8U1 U8.6-201ENST00000364939 135 ntBASIC-0.57□□□□□ -2.5
CHD9Q3L8U1 MIR204-201ENST00000385200 110 ntBASIC-0.57□□□□□ -2.5
CHD9Q3L8U1 MIR516B1-201ENST00000385211 90 ntBASIC-0.57□□□□□ -2.5
CHD9Q3L8U1 MT-TM-201ENST00000387377 68 ntBASIC-0.57□□□□□ -2.5
CHD9Q3L8U1 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.57□□□□□ -2.5
CHD9Q3L8U1 SSR1P2-201ENST00000415208 787 ntBASIC-0.57□□□□□ -2.5
CHD9Q3L8U1 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC-0.57□□□□□ -2.5
CHD9Q3L8U1 AC134698.4-201ENST00000523451 826 ntBASIC-0.57□□□□□ -2.5
CHD9Q3L8U1 POLR3GP1-201ENST00000594073 261 ntBASIC-0.57□□□□□ -2.5
CHD9Q3L8U1 RNU6-1048P-201ENST00000364054 107 ntBASIC-0.58□□□□□ -2.5
CHD9Q3L8U1 RNU6-117P-201ENST00000365415 107 ntBASIC-0.58□□□□□ -2.5
CHD9Q3L8U1 Y_RNA.368-201ENST00000365547 113 ntBASIC-0.58□□□□□ -2.5
CHD9Q3L8U1 RNU6-47P-201ENST00000383866 107 ntBASIC-0.58□□□□□ -2.5
CHD9Q3L8U1 SNORA22B-201ENST00000383876 138 ntBASIC-0.58□□□□□ -2.5
CHD9Q3L8U1 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.58□□□□□ -2.5
CHD9Q3L8U1 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC-0.58□□□□□ -2.5
CHD9Q3L8U1 MTND1P14-201ENST00000427400 950 ntBASIC-0.58□□□□□ -2.5
CHD9Q3L8U1 RNU6-881P-201ENST00000516813 102 ntBASIC-0.58□□□□□ -2.5
CHD9Q3L8U1 AP003168.1-201ENST00000530091 307 ntBASIC-0.58□□□□□ -2.5
CHD9Q3L8U1 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC-0.58□□□□□ -2.5
CHD9Q3L8U1 RNU6-621P-201ENST00000364752 109 ntBASIC-0.58□□□□□ -2.5
CHD9Q3L8U1 RNU6-108P-201ENST00000365558 107 ntBASIC-0.58□□□□□ -2.5
CHD9Q3L8U1 RNU6-606P-201ENST00000384721 111 ntBASIC-0.58□□□□□ -2.5
CHD9Q3L8U1 AL137161.1-201ENST00000532231 390 ntBASIC-0.58□□□□□ -2.5
CHD9Q3L8U1 AP000676.1-201ENST00000533307 52 ntBASIC-0.58□□□□□ -2.5
CHD9Q3L8U1 MIR5692C1-201ENST00000585309 91 ntBASIC-0.58□□□□□ -2.5
CHD9Q3L8U1 AC087683.2-201ENST00000611384 326 ntBASIC-0.58□□□□□ -2.5
CHD9Q3L8U1 AC009878.1-201ENST00000621819 340 ntBASIC-0.58□□□□□ -2.5
CHD9Q3L8U1 RNU6-740P-201ENST00000364734 105 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 Y_RNA.497-201ENST00000384447 98 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 Y_RNA.529-201ENST00000384586 119 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 RNU6-906P-201ENST00000384700 70 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 SNRPGP10-201ENST00000432323 225 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 AC010598.1-201ENST00000510378 103 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 RNU2-69P-201ENST00000516061 100 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 Y_RNA.714-201ENST00000517065 90 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 MIR4999-201ENST00000585029 91 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 MIR101-2-201ENST00000362195 79 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 Y_RNA.270-201ENST00000364693 104 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 Y_RNA.313-201ENST00000365095 103 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 RNU6-1200P-201ENST00000384162 107 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 MTATP6P18-201ENST00000417994 673 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 Y_RNA.653-201ENST00000459091 95 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 AC026421.1-201ENST00000519101 163 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 AGGF1P4-201ENST00000568249 801 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 MIR4306-201ENST00000583390 91 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 POLR3GP2-201ENST00000588366 668 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 AC005609.4-201ENST00000625071 447 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 RNU6-1115P-201ENST00000362490 106 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 Y_RNA.184-201ENST00000363884 108 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 SNORD116-9-201ENST00000384000 95 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 SNORD116-3-201ENST00000384287 95 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 SNORD116-8-201ENST00000384365 95 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 SNORD116-7-201ENST00000384404 95 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 SNORD116-5-201ENST00000384462 95 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 SNORD38B-201ENST00000384690 67 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 MIR548I3-201ENST00000408378 149 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 RNU6-602P-201ENST00000411155 105 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 MTATP6P20-201ENST00000414147 562 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 RNU6-437P-201ENST00000459408 95 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 RNU6-958P-201ENST00000516995 106 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 RNU6-410P-201ENST00000517006 107 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 AL442067.1-201ENST00000613261 223 ntBASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC-0.59□□□□□ -2.5
CHD9Q3L8U1 SNORD115-2-201ENST00000362842 82 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 RNU6-1287P-201ENST00000362914 107 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 RNU6-652P-201ENST00000365488 107 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 RNU6-1060P-201ENST00000384664 107 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 MIR617-201ENST00000385030 97 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 SNORD41.1-201ENST00000391000 69 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 SNORA40.9-201ENST00000515895 93 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 RNA5SP272-201ENST00000516095 111 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 RNU6-276P-201ENST00000516114 96 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 Vault.3-201ENST00000516676 95 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 U6.115-201ENST00000636045 103 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 Y_RNA.13-201ENST00000362403 112 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 Y_RNA.436-201ENST00000384097 102 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 SNORA75.4-201ENST00000391278 119 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 SNORA3B-201ENST00000391305 131 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 RNU6-325P-201ENST00000411132 105 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 RNU6-1194P-201ENST00000516208 104 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 RNU6-830P-201ENST00000516353 107 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 Y_RNA.679-201ENST00000516416 91 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 MIR3941-201ENST00000582572 103 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 AP000942.4-201ENST00000604811 241 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 AL391262.2-201ENST00000622466 494 ntBASIC-0.6□□□□□ -2.51
CHD9Q3L8U1 RNU6-312P-201ENST00000364629 107 ntBASIC-0.61□□□□□ -2.51
CHD9Q3L8U1 RNU6-169P-201ENST00000365336 107 ntBASIC-0.61□□□□□ -2.51
Retrieved 100 of 98,524 protein–RNA pairs in 197.5 ms