Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 UBBP3-201ENST00000445497 241 ntBASIC2.85□□□□□ -1.95
SOX4Q06945 AC009237.6-201ENST00000446969 424 ntBASIC2.85□□□□□ -1.95
SOX4Q06945 RNU7-123P-201ENST00000515911 60 ntBASIC2.85□□□□□ -1.95
SOX4Q06945 AC007536.1-201ENST00000533382 349 ntBASIC2.85□□□□□ -1.95
SOX4Q06945 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
SOX4Q06945 Y_RNA.818-201ENST00000618813 71 ntBASIC2.85□□□□□ -1.95
SOX4Q06945 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
SOX4Q06945 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.84□□□□□ -1.95
SOX4Q06945 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.84□□□□□ -1.95
SOX4Q06945 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.95
SOX4Q06945 RNU4-82P-201ENST00000362443 140 ntBASIC2.84□□□□□ -1.95
SOX4Q06945 Y_RNA.78-201ENST00000362970 110 ntBASIC2.84□□□□□ -1.95
SOX4Q06945 RNA5SP68-201ENST00000363885 119 ntBASIC2.84□□□□□ -1.95
SOX4Q06945 MIR548D2-201ENST00000384955 97 ntBASIC2.84□□□□□ -1.95
SOX4Q06945 RNA5SP482-201ENST00000391269 118 ntBASIC2.84□□□□□ -1.95
SOX4Q06945 SNORA26.7-201ENST00000391288 122 ntBASIC2.84□□□□□ -1.95
SOX4Q06945 MIR887-201ENST00000401258 79 ntBASIC2.84□□□□□ -1.95
SOX4Q06945 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.84□□□□□ -1.95
SOX4Q06945 AC087499.4-201ENST00000448505 178 ntBASIC2.84□□□□□ -1.95
SOX4Q06945 RNU7-80P-201ENST00000459562 61 ntBASIC2.84□□□□□ -1.95
SOX4Q06945 RN7SL297P-201ENST00000483161 293 ntBASIC2.84□□□□□ -1.95
SOX4Q06945 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.84□□□□□ -1.95
SOX4Q06945 SNORA9.3-201ENST00000516383 129 ntBASIC2.84□□□□□ -1.95
SOX4Q06945 AC022523.2-201ENST00000561045 150 ntBASIC2.84□□□□□ -1.95
SOX4Q06945 MIR4305-201ENST00000583252 102 ntBASIC2.84□□□□□ -1.95
SOX4Q06945 MIR4635-201ENST00000583759 79 ntBASIC2.84□□□□□ -1.95
SOX4Q06945 DLEU2_5.2-201ENST00000610606 84 ntBASIC2.84□□□□□ -1.95
SOX4Q06945 Y_RNA.265-201ENST00000364677 108 ntBASIC2.83□□□□□ -1.96
SOX4Q06945 RNA5SP344-201ENST00000411081 104 ntBASIC2.83□□□□□ -1.96
SOX4Q06945 RNA5SP282-201ENST00000516355 108 ntBASIC2.83□□□□□ -1.96
SOX4Q06945 RNA5SP148-201ENST00000516527 94 ntBASIC2.83□□□□□ -1.96
SOX4Q06945 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.83□□□□□ -1.96
SOX4Q06945 AC141557.1-201ENST00000540982 400 ntBASIC2.83□□□□□ -1.96
SOX4Q06945 MIR4778-201ENST00000577635 80 ntBASIC2.83□□□□□ -1.96
SOX4Q06945 MIR3163-201ENST00000581592 73 ntBASIC2.83□□□□□ -1.96
SOX4Q06945 AC002984.1-201ENST00000591692 448 ntBASIC2.83□□□□□ -1.96
SOX4Q06945 MIR6817-201ENST00000615588 66 ntBASIC2.83□□□□□ -1.96
SOX4Q06945 AC015726.2-201ENST00000620112 122 ntBASIC2.83□□□□□ -1.96
SOX4Q06945 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.83□□□□□ -1.96
SOX4Q06945 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
SOX4Q06945 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.82□□□□□ -1.96
SOX4Q06945 RNA5SP493-201ENST00000364115 91 ntBASIC2.82□□□□□ -1.96
SOX4Q06945 RNY1P7-201ENST00000384743 110 ntBASIC2.82□□□□□ -1.96
SOX4Q06945 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.82□□□□□ -1.96
SOX4Q06945 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.82□□□□□ -1.96
SOX4Q06945 AC245047.3-201ENST00000429428 127 ntBASIC2.82□□□□□ -1.96
SOX4Q06945 MTATP8P2-201ENST00000435212 202 ntBASIC2.82□□□□□ -1.96
SOX4Q06945 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.82□□□□□ -1.96
SOX4Q06945 AL606517.2-201ENST00000442855 241 ntBASIC2.82□□□□□ -1.96
SOX4Q06945 RNU6-904P-201ENST00000516206 101 ntBASIC2.82□□□□□ -1.96
SOX4Q06945 RNU7-28P-201ENST00000516759 62 ntBASIC2.82□□□□□ -1.96
SOX4Q06945 HSPE1P19-201ENST00000603327 295 ntBASIC2.82□□□□□ -1.96
SOX4Q06945 AC091932.4-201ENST00000623386 200 ntBASIC2.82□□□□□ -1.96
SOX4Q06945 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.82□□□□□ -1.96
SOX4Q06945 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
SOX4Q06945 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
SOX4Q06945 RNU6-461P-201ENST00000364195 107 ntBASIC2.81□□□□□ -1.96
SOX4Q06945 Y_RNA.220-201ENST00000364244 109 ntBASIC2.81□□□□□ -1.96
SOX4Q06945 Y_RNA.454-201ENST00000384224 113 ntBASIC2.81□□□□□ -1.96
SOX4Q06945 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.81□□□□□ -1.96
SOX4Q06945 RNU2-35P-201ENST00000516446 142 ntBASIC2.81□□□□□ -1.96
SOX4Q06945 MIR3683-201ENST00000580847 82 ntBASIC2.81□□□□□ -1.96
SOX4Q06945 AL442128.1-201ENST00000615151 90 ntBASIC2.81□□□□□ -1.96
SOX4Q06945 MIR2052-201ENST00000636055 55 ntBASIC2.81□□□□□ -1.96
SOX4Q06945 AL162726.3-218ENST00000636401 95 ntBASIC2.81□□□□□ -1.96
SOX4Q06945 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
SOX4Q06945 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
SOX4Q06945 RNA5SP126-201ENST00000365092 109 ntBASIC2.8□□□□□ -1.96
SOX4Q06945 AL627390.1-201ENST00000396055 340 ntBASIC2.8□□□□□ -1.96
SOX4Q06945 RN7SL499P-201ENST00000481141 276 ntBASIC2.8□□□□□ -1.96
SOX4Q06945 RNU6-158P-201ENST00000517104 100 ntBASIC2.8□□□□□ -1.96
SOX4Q06945 MIR3616-201ENST00000584070 92 ntBASIC2.8□□□□□ -1.96
SOX4Q06945 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.8□□□□□ -1.96
SOX4Q06945 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.8□□□□□ -1.96
SOX4Q06945 MIR342-201ENST00000362212 99 ntBASIC2.79□□□□□ -1.96
SOX4Q06945 SNORA63D-201ENST00000364359 132 ntBASIC2.79□□□□□ -1.96
SOX4Q06945 SNORA67.4-201ENST00000384688 142 ntBASIC2.79□□□□□ -1.96
SOX4Q06945 RNA5SP109-201ENST00000391010 116 ntBASIC2.79□□□□□ -1.96
SOX4Q06945 RPS3AP1-201ENST00000413190 320 ntBASIC2.79□□□□□ -1.96
SOX4Q06945 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.79□□□□□ -1.96
SOX4Q06945 RPL39P25-201ENST00000449384 154 ntBASIC2.79□□□□□ -1.96
SOX4Q06945 RNA5SP320-201ENST00000516263 124 ntBASIC2.79□□□□□ -1.96
SOX4Q06945 MIR3169-201ENST00000578032 83 ntBASIC2.79□□□□□ -1.96
SOX4Q06945 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.79□□□□□ -1.96
SOX4Q06945 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
SOX4Q06945 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.78□□□□□ -1.96
SOX4Q06945 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
SOX4Q06945 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
SOX4Q06945 MIR302B-201ENST00000362188 73 ntBASIC2.78□□□□□ -1.96
SOX4Q06945 RNU4-16P-201ENST00000364737 141 ntBASIC2.78□□□□□ -1.96
SOX4Q06945 SNX2P2-201ENST00000424553 323 ntBASIC2.78□□□□□ -1.96
SOX4Q06945 AC114811.1-201ENST00000507207 168 ntBASIC2.78□□□□□ -1.96
SOX4Q06945 RNU7-6P-201ENST00000516845 62 ntBASIC2.78□□□□□ -1.96
SOX4Q06945 AC078899.2-201ENST00000595282 212 ntBASIC2.78□□□□□ -1.96
SOX4Q06945 AC062037.1-201ENST00000605302 128 ntBASIC2.78□□□□□ -1.96
SOX4Q06945 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.78□□□□□ -1.96
SOX4Q06945 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.78□□□□□ -1.96
SOX4Q06945 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.78□□□□□ -1.96
SOX4Q06945 RNU6-23P-201ENST00000363283 107 ntBASIC2.77□□□□□ -1.97
SOX4Q06945 SNORD38C-201ENST00000384381 69 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 167.1 ms