Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AL359075.3-201ENST00000613288 217 ntBASIC2.25□□□□□ -2.05
COL4A3Q01955 5S_rRNA.12-201ENST00000617631 107 ntBASIC2.25□□□□□ -2.05
COL4A3Q01955 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.25□□□□□ -2.05
COL4A3Q01955 Y_RNA.267-201ENST00000364679 109 ntBASIC2.25□□□□□ -2.05
COL4A3Q01955 MIR891A-201ENST00000401237 79 ntBASIC2.25□□□□□ -2.05
COL4A3Q01955 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.25□□□□□ -2.05
COL4A3Q01955 AL021397.1-201ENST00000451806 248 ntBASIC2.25□□□□□ -2.05
COL4A3Q01955 AL049830.1-201ENST00000468034 425 ntBASIC2.25□□□□□ -2.05
COL4A3Q01955 RNU6-341P-201ENST00000516973 96 ntBASIC2.25□□□□□ -2.05
COL4A3Q01955 MIR3129-201ENST00000581095 76 ntBASIC2.25□□□□□ -2.05
COL4A3Q01955 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC2.25□□□□□ -2.05
COL4A3Q01955 MIR338-201ENST00000636369 67 ntBASIC2.25□□□□□ -2.05
COL4A3Q01955 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
COL4A3Q01955 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.24□□□□□ -2.05
COL4A3Q01955 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
COL4A3Q01955 Y_RNA.52-201ENST00000362760 96 ntBASIC2.24□□□□□ -2.05
COL4A3Q01955 SNORD114-6-201ENST00000364393 72 ntBASIC2.24□□□□□ -2.05
COL4A3Q01955 RNU6-755P-201ENST00000364400 103 ntBASIC2.24□□□□□ -2.05
COL4A3Q01955 Y_RNA.242-201ENST00000364473 110 ntBASIC2.24□□□□□ -2.05
COL4A3Q01955 AF228730.3-201ENST00000436691 102 ntBASIC2.24□□□□□ -2.05
COL4A3Q01955 RPS26P45-201ENST00000471748 340 ntBASIC2.24□□□□□ -2.05
COL4A3Q01955 RNU6-1291P-201ENST00000516591 104 ntBASIC2.24□□□□□ -2.05
COL4A3Q01955 RNU6-826P-201ENST00000516827 104 ntBASIC2.24□□□□□ -2.05
COL4A3Q01955 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.24□□□□□ -2.05
COL4A3Q01955 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.24□□□□□ -2.05
COL4A3Q01955 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
COL4A3Q01955 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC2.24□□□□□ -2.05
COL4A3Q01955 SNORD58C-201ENST00000365223 64 ntBASIC2.23□□□□□ -2.05
COL4A3Q01955 SNORD61-201ENST00000384252 73 ntBASIC2.23□□□□□ -2.05
COL4A3Q01955 AC063976.4-201ENST00000421971 163 ntBASIC2.23□□□□□ -2.05
COL4A3Q01955 AC003989.2-201ENST00000440224 169 ntBASIC2.23□□□□□ -2.05
COL4A3Q01955 MTATP6P21-201ENST00000440681 189 ntBASIC2.23□□□□□ -2.05
COL4A3Q01955 NDUFA4P2-201ENST00000489989 244 ntBASIC2.23□□□□□ -2.05
COL4A3Q01955 AL358944.1-201ENST00000528537 144 ntBASIC2.23□□□□□ -2.05
COL4A3Q01955 AC007751.1-201ENST00000529260 376 ntBASIC2.23□□□□□ -2.05
COL4A3Q01955 AC025166.1-201ENST00000612411 163 ntBASIC2.23□□□□□ -2.05
COL4A3Q01955 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.23□□□□□ -2.05
COL4A3Q01955 ZNF271P-202ENST00000465539 1970 ntBASIC2.23□□□□□ -2.05
COL4A3Q01955 RNU6-1292P-201ENST00000383856 107 ntBASIC2.22□□□□□ -2.05
COL4A3Q01955 RNU1-138P-201ENST00000384093 164 ntBASIC2.22□□□□□ -2.05
COL4A3Q01955 SNORD116-21-201ENST00000384507 92 ntBASIC2.22□□□□□ -2.05
COL4A3Q01955 MIR548A1-201ENST00000385041 97 ntBASIC2.22□□□□□ -2.05
COL4A3Q01955 SNORA12.1-201ENST00000390873 148 ntBASIC2.22□□□□□ -2.05
COL4A3Q01955 EDDM3CP-201ENST00000415977 425 ntBASIC2.22□□□□□ -2.05
COL4A3Q01955 RNU7-94P-201ENST00000459576 63 ntBASIC2.22□□□□□ -2.05
COL4A3Q01955 MRPS17P9-201ENST00000511924 393 ntBASIC2.22□□□□□ -2.05
COL4A3Q01955 TRMT112P2-201ENST00000512910 132 ntBASIC2.22□□□□□ -2.05
COL4A3Q01955 Y_RNA.666-201ENST00000516187 112 ntBASIC2.22□□□□□ -2.05
COL4A3Q01955 RNU6-667P-201ENST00000517186 102 ntBASIC2.22□□□□□ -2.05
COL4A3Q01955 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.22□□□□□ -2.05
COL4A3Q01955 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.22□□□□□ -2.05
COL4A3Q01955 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
COL4A3Q01955 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.22□□□□□ -2.05
COL4A3Q01955 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.22□□□□□ -2.05
COL4A3Q01955 Y_RNA.253-201ENST00000364562 112 ntBASIC2.22□□□□□ -2.05
COL4A3Q01955 RNU6-220P-201ENST00000390919 107 ntBASIC2.22□□□□□ -2.05
COL4A3Q01955 SNORA11.4-201ENST00000408823 129 ntBASIC2.22□□□□□ -2.05
COL4A3Q01955 SRIP3-201ENST00000413200 219 ntBASIC2.22□□□□□ -2.05
COL4A3Q01955 AL353689.1-201ENST00000438895 199 ntBASIC2.22□□□□□ -2.05
COL4A3Q01955 RNA5SP200-201ENST00000516360 103 ntBASIC2.22□□□□□ -2.05
COL4A3Q01955 RNU6-781P-201ENST00000516377 101 ntBASIC2.22□□□□□ -2.05
COL4A3Q01955 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.22□□□□□ -2.05
COL4A3Q01955 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
COL4A3Q01955 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.21□□□□□ -2.06
COL4A3Q01955 RNA5SP323-201ENST00000391094 133 ntBASIC2.21□□□□□ -2.06
COL4A3Q01955 SNORA26.7-201ENST00000391288 122 ntBASIC2.21□□□□□ -2.06
COL4A3Q01955 RNA5SP270-201ENST00000411361 118 ntBASIC2.21□□□□□ -2.06
COL4A3Q01955 FTH1P12-201ENST00000432137 551 ntBASIC2.21□□□□□ -2.06
COL4A3Q01955 AL163195.1-201ENST00000496941 348 ntBASIC2.21□□□□□ -2.06
COL4A3Q01955 SNORD33.1-201ENST00000516213 88 ntBASIC2.21□□□□□ -2.06
COL4A3Q01955 AC008507.4-201ENST00000585464 127 ntBASIC2.21□□□□□ -2.06
COL4A3Q01955 AL121890.5-201ENST00000620848 304 ntBASIC2.21□□□□□ -2.06
COL4A3Q01955 MIR6079-201ENST00000635807 62 ntBASIC2.21□□□□□ -2.06
COL4A3Q01955 U6.108-201ENST00000637764 58 ntBASIC2.21□□□□□ -2.06
COL4A3Q01955 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
COL4A3Q01955 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.2□□□□□ -2.06
COL4A3Q01955 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
COL4A3Q01955 MIR126-201ENST00000362291 85 ntBASIC2.2□□□□□ -2.06
COL4A3Q01955 RNU6-1084P-201ENST00000362498 107 ntBASIC2.2□□□□□ -2.06
COL4A3Q01955 Y_RNA.35-201ENST00000362601 101 ntBASIC2.2□□□□□ -2.06
COL4A3Q01955 RNU6-1164P-201ENST00000364428 107 ntBASIC2.2□□□□□ -2.06
COL4A3Q01955 SNORA26.9-201ENST00000391322 122 ntBASIC2.2□□□□□ -2.06
COL4A3Q01955 AL117342.1-201ENST00000404861 406 ntBASIC2.2□□□□□ -2.06
COL4A3Q01955 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
COL4A3Q01955 AC018868.1-201ENST00000491307 315 ntBASIC2.2□□□□□ -2.06
COL4A3Q01955 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.2□□□□□ -2.06
COL4A3Q01955 RNU7-128P-201ENST00000517247 62 ntBASIC2.2□□□□□ -2.06
COL4A3Q01955 IGKV1-22-201ENST00000524313 326 ntBASIC2.2□□□□□ -2.06
COL4A3Q01955 MIR3613-201ENST00000579844 87 ntBASIC2.2□□□□□ -2.06
COL4A3Q01955 AC022217.4-201ENST00000604389 163 ntBASIC2.2□□□□□ -2.06
COL4A3Q01955 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.2□□□□□ -2.06
COL4A3Q01955 MTND5P18-201ENST00000445624 1801 ntBASIC2.2□□□□□ -2.06
COL4A3Q01955 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
COL4A3Q01955 RNU6-888P-201ENST00000363010 101 ntBASIC2.19□□□□□ -2.06
COL4A3Q01955 SNORA8-201ENST00000384574 139 ntBASIC2.19□□□□□ -2.06
COL4A3Q01955 SNORD72-201ENST00000390994 80 ntBASIC2.19□□□□□ -2.06
COL4A3Q01955 MIR1263-201ENST00000408324 86 ntBASIC2.19□□□□□ -2.06
COL4A3Q01955 ATP5J2P3-201ENST00000451550 258 ntBASIC2.19□□□□□ -2.06
COL4A3Q01955 RNU6-1270P-201ENST00000517128 108 ntBASIC2.19□□□□□ -2.06
COL4A3Q01955 RNA5SP402-201ENST00000517148 110 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms