Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 NDUFA4P2-201ENST00000489989 244 ntBASIC1.33□□□□□ -2.2
PDX1P52945 RNA5SP61-201ENST00000516453 100 ntBASIC1.33□□□□□ -2.2
PDX1P52945 snoU18.1-201ENST00000629629 71 ntBASIC1.33□□□□□ -2.2
PDX1P52945 Y_RNA.44-201ENST00000362676 108 ntBASIC1.32□□□□□ -2.2
PDX1P52945 U8.1-201ENST00000362843 134 ntBASIC1.32□□□□□ -2.2
PDX1P52945 RNU6-833P-201ENST00000363486 107 ntBASIC1.32□□□□□ -2.2
PDX1P52945 RNU6-1289P-201ENST00000384431 106 ntBASIC1.32□□□□□ -2.2
PDX1P52945 RNU6-131P-201ENST00000391144 107 ntBASIC1.32□□□□□ -2.2
PDX1P52945 MIR891A-201ENST00000401237 79 ntBASIC1.32□□□□□ -2.2
PDX1P52945 RNU2-38P-201ENST00000410856 79 ntBASIC1.32□□□□□ -2.2
PDX1P52945 RNU6-383P-201ENST00000410864 94 ntBASIC1.32□□□□□ -2.2
PDX1P52945 RPL39P38-201ENST00000467018 153 ntBASIC1.32□□□□□ -2.2
PDX1P52945 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.32□□□□□ -2.2
PDX1P52945 RNU6-902P-201ENST00000517212 91 ntBASIC1.32□□□□□ -2.2
PDX1P52945 SNORA4-201ENST00000584302 138 ntBASIC1.32□□□□□ -2.2
PDX1P52945 MIR3660-201ENST00000584845 100 ntBASIC1.32□□□□□ -2.2
PDX1P52945 AC027279.3-201ENST00000625055 122 ntBASIC1.32□□□□□ -2.2
PDX1P52945 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.32□□□□□ -2.2
PDX1P52945 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.32□□□□□ -2.2
PDX1P52945 RNU6-1205P-201ENST00000363625 106 ntBASIC1.31□□□□□ -2.2
PDX1P52945 RNU6-674P-201ENST00000363831 107 ntBASIC1.31□□□□□ -2.2
PDX1P52945 Y_RNA.191-201ENST00000363972 113 ntBASIC1.31□□□□□ -2.2
PDX1P52945 RNU4-10P-201ENST00000364383 140 ntBASIC1.31□□□□□ -2.2
PDX1P52945 RNU6-740P-201ENST00000364734 105 ntBASIC1.31□□□□□ -2.2
PDX1P52945 SNORD50B-201ENST00000364995 70 ntBASIC1.31□□□□□ -2.2
PDX1P52945 RNU6-955P-201ENST00000410497 104 ntBASIC1.31□□□□□ -2.2
PDX1P52945 SNX2P2-201ENST00000424553 323 ntBASIC1.31□□□□□ -2.2
PDX1P52945 SNRPGP13-201ENST00000442212 177 ntBASIC1.31□□□□□ -2.2
PDX1P52945 SNORD11-201ENST00000459124 84 ntBASIC1.31□□□□□ -2.2
PDX1P52945 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.31□□□□□ -2.2
PDX1P52945 SNORD45.4-201ENST00000516629 73 ntBASIC1.31□□□□□ -2.2
PDX1P52945 AL512310.8-201ENST00000550183 120 ntBASIC1.31□□□□□ -2.2
PDX1P52945 RPL23AP91-201ENST00000569211 455 ntBASIC1.31□□□□□ -2.2
PDX1P52945 MIR5692C2-201ENST00000577959 77 ntBASIC1.31□□□□□ -2.2
PDX1P52945 AP001485.1-201ENST00000604799 199 ntBASIC1.31□□□□□ -2.2
PDX1P52945 JPX_2.1-201ENST00000614161 69 ntBASIC1.31□□□□□ -2.2
PDX1P52945 AC091895.1-201ENST00000624494 256 ntBASIC1.31□□□□□ -2.2
PDX1P52945 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
PDX1P52945 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.3□□□□□ -2.2
PDX1P52945 MIR335-201ENST00000362173 94 ntBASIC1.3□□□□□ -2.2
PDX1P52945 MIR96-201ENST00000362288 78 ntBASIC1.3□□□□□ -2.2
PDX1P52945 RNU6-211P-201ENST00000384047 107 ntBASIC1.3□□□□□ -2.2
PDX1P52945 RNU6-1065P-201ENST00000384513 106 ntBASIC1.3□□□□□ -2.2
PDX1P52945 MIR653-201ENST00000385279 96 ntBASIC1.3□□□□□ -2.2
PDX1P52945 RPS29P29-201ENST00000456396 171 ntBASIC1.3□□□□□ -2.2
PDX1P52945 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.3□□□□□ -2.2
PDX1P52945 RNU6-165P-201ENST00000517170 99 ntBASIC1.3□□□□□ -2.2
PDX1P52945 AC012433.1-201ENST00000588916 398 ntBASIC1.3□□□□□ -2.2
PDX1P52945 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.3□□□□□ -2.2
PDX1P52945 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.3□□□□□ -2.2
PDX1P52945 SNORD33-201ENST00000362761 85 ntBASIC1.29□□□□□ -2.2
PDX1P52945 SNORD114-22-201ENST00000365423 72 ntBASIC1.29□□□□□ -2.2
PDX1P52945 MIR516B2-201ENST00000385190 85 ntBASIC1.29□□□□□ -2.2
PDX1P52945 MTND3P2-201ENST00000438452 342 ntBASIC1.29□□□□□ -2.2
PDX1P52945 snoU13.18-201ENST00000459483 104 ntBASIC1.29□□□□□ -2.2
PDX1P52945 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.29□□□□□ -2.2
PDX1P52945 AC090049.2-201ENST00000550377 109 ntBASIC1.29□□□□□ -2.2
PDX1P52945 MIR4452-201ENST00000583004 71 ntBASIC1.29□□□□□ -2.2
PDX1P52945 MIR6078-201ENST00000611069 100 ntBASIC1.29□□□□□ -2.2
PDX1P52945 AL121890.5-201ENST00000620848 304 ntBASIC1.29□□□□□ -2.2
PDX1P52945 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
PDX1P52945 RNU6-1084P-201ENST00000362498 107 ntBASIC1.28□□□□□ -2.2
PDX1P52945 Y_RNA.293-201ENST00000364908 93 ntBASIC1.28□□□□□ -2.2
PDX1P52945 snoU2-30.1-201ENST00000365012 70 ntBASIC1.28□□□□□ -2.2
PDX1P52945 SNORD72-201ENST00000390994 80 ntBASIC1.28□□□□□ -2.2
PDX1P52945 SNORA40.6-201ENST00000391153 128 ntBASIC1.28□□□□□ -2.2
PDX1P52945 MIR1298-201ENST00000408783 112 ntBASIC1.28□□□□□ -2.2
PDX1P52945 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.28□□□□□ -2.2
PDX1P52945 SNORD2.1-201ENST00000458762 69 ntBASIC1.28□□□□□ -2.2
PDX1P52945 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.28□□□□□ -2.2
PDX1P52945 CYP3A52P-201ENST00000563326 91 ntBASIC1.28□□□□□ -2.2
PDX1P52945 MIR3664-201ENST00000579074 99 ntBASIC1.28□□□□□ -2.2
PDX1P52945 AL021707.8-201ENST00000609428 183 ntBASIC1.28□□□□□ -2.2
PDX1P52945 Y_RNA.336-201ENST00000365307 109 ntBASIC1.27□□□□□ -2.21
PDX1P52945 RNU6-574P-201ENST00000384265 107 ntBASIC1.27□□□□□ -2.21
PDX1P52945 Y_RNA.572-201ENST00000384757 98 ntBASIC1.27□□□□□ -2.21
PDX1P52945 AL603910.2-201ENST00000407268 136 ntBASIC1.27□□□□□ -2.21
PDX1P52945 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.27□□□□□ -2.21
PDX1P52945 Y_RNA.668-201ENST00000516233 93 ntBASIC1.27□□□□□ -2.21
PDX1P52945 AC090142.3-201ENST00000519012 385 ntBASIC1.27□□□□□ -2.21
PDX1P52945 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.27□□□□□ -2.21
PDX1P52945 MIR4643-201ENST00000577473 78 ntBASIC1.27□□□□□ -2.21
PDX1P52945 AC008507.4-201ENST00000585464 127 ntBASIC1.27□□□□□ -2.21
PDX1P52945 FAM106DP-201ENST00000586416 501 ntBASIC1.27□□□□□ -2.21
PDX1P52945 MIR7974-201ENST00000615835 79 ntBASIC1.27□□□□□ -2.21
PDX1P52945 U6.104-201ENST00000637979 90 ntBASIC1.27□□□□□ -2.21
PDX1P52945 MIR367-201ENST00000362299 68 ntBASIC1.26□□□□□ -2.21
PDX1P52945 SNORA2.2-201ENST00000365473 135 ntBASIC1.26□□□□□ -2.21
PDX1P52945 RNU6-144P-201ENST00000383951 107 ntBASIC1.26□□□□□ -2.21
PDX1P52945 MIR452-201ENST00000385020 85 ntBASIC1.26□□□□□ -2.21
PDX1P52945 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
PDX1P52945 AL451046.2-201ENST00000403074 277 ntBASIC1.26□□□□□ -2.21
PDX1P52945 AC245047.8-201ENST00000456455 284 ntBASIC1.26□□□□□ -2.21
PDX1P52945 SNORD127-201ENST00000458892 86 ntBASIC1.26□□□□□ -2.21
PDX1P52945 AC100767.1-201ENST00000528178 123 ntBASIC1.26□□□□□ -2.21
PDX1P52945 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.26□□□□□ -2.21
PDX1P52945 MIR2681-201ENST00000581814 105 ntBASIC1.26□□□□□ -2.21
PDX1P52945 AL513534.2-201ENST00000603836 250 ntBASIC1.26□□□□□ -2.21
PDX1P52945 AL442644.1-201ENST00000454390 3105 ntBASIC1.25□□□□□ -2.21
PDX1P52945 Y_RNA.14-201ENST00000362415 103 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 145.1 ms