Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 MTND5P22-201ENST00000458380 195 ntBASIC1.14□□□□□ -2.23
LHX1P48742 Y_RNA.637-201ENST00000459424 114 ntBASIC1.14□□□□□ -2.23
LHX1P48742 NDUFA4P2-201ENST00000489989 244 ntBASIC1.14□□□□□ -2.23
LHX1P48742 AL133373.1-201ENST00000497098 94 ntBASIC1.14□□□□□ -2.23
LHX1P48742 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.14□□□□□ -2.23
LHX1P48742 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.14□□□□□ -2.23
LHX1P48742 AC006504.6-201ENST00000590142 199 ntBASIC1.14□□□□□ -2.23
LHX1P48742 AL022345.2-201ENST00000606307 135 ntBASIC1.14□□□□□ -2.23
LHX1P48742 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.14□□□□□ -2.23
LHX1P48742 AC013791.1-201ENST00000616619 62 ntBASIC1.14□□□□□ -2.23
LHX1P48742 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.13□□□□□ -2.23
LHX1P48742 Y_RNA.16-201ENST00000362421 102 ntBASIC1.13□□□□□ -2.23
LHX1P48742 RNU6-1272P-201ENST00000362776 107 ntBASIC1.13□□□□□ -2.23
LHX1P48742 Y_RNA.238-201ENST00000364441 102 ntBASIC1.13□□□□□ -2.23
LHX1P48742 SNORA25.9-201ENST00000365087 128 ntBASIC1.13□□□□□ -2.23
LHX1P48742 RNU6-662P-201ENST00000384253 104 ntBASIC1.13□□□□□ -2.23
LHX1P48742 SNORD38C-201ENST00000384381 69 ntBASIC1.13□□□□□ -2.23
LHX1P48742 RNU6-939P-201ENST00000384634 107 ntBASIC1.13□□□□□ -2.23
LHX1P48742 RNU6-910P-201ENST00000390844 107 ntBASIC1.13□□□□□ -2.23
LHX1P48742 BTF3P11-201ENST00000426582 477 ntBASIC1.13□□□□□ -2.23
LHX1P48742 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.13□□□□□ -2.23
LHX1P48742 RNU7-40P-201ENST00000516397 64 ntBASIC1.13□□□□□ -2.23
LHX1P48742 SNORA18.7-201ENST00000516910 131 ntBASIC1.13□□□□□ -2.23
LHX1P48742 SNORA74.3-201ENST00000517108 154 ntBASIC1.13□□□□□ -2.23
LHX1P48742 BX284668.6-201ENST00000606899 438 ntBASIC1.13□□□□□ -2.23
LHX1P48742 AL096861.1-201ENST00000610899 123 ntBASIC1.13□□□□□ -2.23
LHX1P48742 SNORA63-201ENST00000363450 132 ntBASIC1.12□□□□□ -2.23
LHX1P48742 RNU6-713P-201ENST00000384761 107 ntBASIC1.12□□□□□ -2.23
LHX1P48742 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
LHX1P48742 SERF1AP1-201ENST00000514575 187 ntBASIC1.12□□□□□ -2.23
LHX1P48742 SNORA27.4-201ENST00000516650 95 ntBASIC1.12□□□□□ -2.23
LHX1P48742 RNU6-570P-201ENST00000517051 105 ntBASIC1.12□□□□□ -2.23
LHX1P48742 AC008507.4-201ENST00000585464 127 ntBASIC1.12□□□□□ -2.23
LHX1P48742 Y_RNA.326-201ENST00000365176 113 ntBASIC1.11□□□□□ -2.23
LHX1P48742 MIR520C-201ENST00000385005 87 ntBASIC1.11□□□□□ -2.23
LHX1P48742 MIR618-201ENST00000385287 98 ntBASIC1.11□□□□□ -2.23
LHX1P48742 RNU6-1109P-201ENST00000391187 107 ntBASIC1.11□□□□□ -2.23
LHX1P48742 MIR1285-1-201ENST00000408593 84 ntBASIC1.11□□□□□ -2.23
LHX1P48742 RPS29P28-201ENST00000446439 141 ntBASIC1.11□□□□□ -2.23
LHX1P48742 AC023449.1-201ENST00000454464 154 ntBASIC1.11□□□□□ -2.23
LHX1P48742 SNORD11-201ENST00000459124 84 ntBASIC1.11□□□□□ -2.23
LHX1P48742 RNU6-1338P-201ENST00000516328 91 ntBASIC1.11□□□□□ -2.23
LHX1P48742 SCARNA24.2-201ENST00000516968 130 ntBASIC1.11□□□□□ -2.23
LHX1P48742 AL442663.2-201ENST00000554385 511 ntBASIC1.11□□□□□ -2.23
LHX1P48742 MIR5692C2-201ENST00000577959 77 ntBASIC1.11□□□□□ -2.23
LHX1P48742 SNORD114-21-201ENST00000606412 72 ntBASIC1.11□□□□□ -2.23
LHX1P48742 MIR6504-201ENST00000613520 61 ntBASIC1.11□□□□□ -2.23
LHX1P48742 AC027335.2-201ENST00000624030 375 ntBASIC1.11□□□□□ -2.23
LHX1P48742 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.1□□□□□ -2.23
LHX1P48742 MIR367-201ENST00000362299 68 ntBASIC1.1□□□□□ -2.23
LHX1P48742 Y_RNA.242-201ENST00000364473 110 ntBASIC1.1□□□□□ -2.23
LHX1P48742 Y_RNA.293-201ENST00000364908 93 ntBASIC1.1□□□□□ -2.23
LHX1P48742 MIR499A-201ENST00000384903 122 ntBASIC1.1□□□□□ -2.23
LHX1P48742 RNU6-1203P-201ENST00000410703 110 ntBASIC1.1□□□□□ -2.23
LHX1P48742 SNORD123-201ENST00000459473 70 ntBASIC1.1□□□□□ -2.23
LHX1P48742 RNU6-635P-201ENST00000516651 102 ntBASIC1.1□□□□□ -2.23
LHX1P48742 Y_RNA.720-201ENST00000517166 92 ntBASIC1.1□□□□□ -2.23
LHX1P48742 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.1□□□□□ -2.23
LHX1P48742 MIR3192-201ENST00000584920 77 ntBASIC1.1□□□□□ -2.23
LHX1P48742 AC022140.2-201ENST00000623500 188 ntBASIC1.1□□□□□ -2.23
LHX1P48742 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.1□□□□□ -2.23
LHX1P48742 Y_RNA.14-201ENST00000362415 103 ntBASIC1.09□□□□□ -2.23
LHX1P48742 Y_RNA.217-201ENST00000364214 105 ntBASIC1.09□□□□□ -2.23
LHX1P48742 RNU6-1160P-201ENST00000384546 104 ntBASIC1.09□□□□□ -2.23
LHX1P48742 SNORD72-201ENST00000390994 80 ntBASIC1.09□□□□□ -2.23
LHX1P48742 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.09□□□□□ -2.23
LHX1P48742 RNU6-383P-201ENST00000410864 94 ntBASIC1.09□□□□□ -2.23
LHX1P48742 AC245047.8-201ENST00000456455 284 ntBASIC1.09□□□□□ -2.23
LHX1P48742 Y_RNA.641-201ENST00000459414 105 ntBASIC1.09□□□□□ -2.23
LHX1P48742 TRBVB-201ENST00000477100 408 ntBASIC1.09□□□□□ -2.23
LHX1P48742 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.09□□□□□ -2.23
LHX1P48742 RNU7-43P-201ENST00000516554 64 ntBASIC1.09□□□□□ -2.23
LHX1P48742 DEFB108E-201ENST00000524692 240 ntBASIC1.09□□□□□ -2.23
LHX1P48742 MIR4724-201ENST00000579485 89 ntBASIC1.09□□□□□ -2.23
LHX1P48742 Y_RNA.812-201ENST00000610788 101 ntBASIC1.09□□□□□ -2.23
LHX1P48742 Y_RNA.784-201ENST00000613803 101 ntBASIC1.09□□□□□ -2.23
LHX1P48742 Y_RNA.787-201ENST00000616522 101 ntBASIC1.09□□□□□ -2.23
LHX1P48742 Y_RNA.780-201ENST00000617336 101 ntBASIC1.09□□□□□ -2.23
LHX1P48742 Y_RNA.801-201ENST00000619005 101 ntBASIC1.09□□□□□ -2.23
LHX1P48742 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
LHX1P48742 UBE2WP1-201ENST00000362030 340 ntBASIC1.08□□□□□ -2.24
LHX1P48742 RNU6-268P-201ENST00000364174 107 ntBASIC1.08□□□□□ -2.24
LHX1P48742 SNRPGP14-201ENST00000435400 219 ntBASIC1.08□□□□□ -2.24
LHX1P48742 MTATP8P1-201ENST00000467115 207 ntBASIC1.08□□□□□ -2.24
LHX1P48742 RNA5SP404-201ENST00000517118 132 ntBASIC1.08□□□□□ -2.24
LHX1P48742 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.08□□□□□ -2.24
LHX1P48742 MIR4764-201ENST00000580680 88 ntBASIC1.08□□□□□ -2.24
LHX1P48742 AC136443.5-201ENST00000603741 370 ntBASIC1.08□□□□□ -2.24
LHX1P48742 AL391903.3-201ENST00000612158 163 ntBASIC1.08□□□□□ -2.24
LHX1P48742 snoU18.1-201ENST00000629629 71 ntBASIC1.08□□□□□ -2.24
LHX1P48742 MIR96-201ENST00000362288 78 ntBASIC1.07□□□□□ -2.24
LHX1P48742 RNU6-238P-201ENST00000363313 106 ntBASIC1.07□□□□□ -2.24
LHX1P48742 RNU4-38P-201ENST00000364472 129 ntBASIC1.07□□□□□ -2.24
LHX1P48742 Y_RNA.363-201ENST00000365529 113 ntBASIC1.07□□□□□ -2.24
LHX1P48742 SNORA80D-201ENST00000384488 135 ntBASIC1.07□□□□□ -2.24
LHX1P48742 RNU6-1011P-201ENST00000384668 107 ntBASIC1.07□□□□□ -2.24
LHX1P48742 MIR606-201ENST00000384851 96 ntBASIC1.07□□□□□ -2.24
LHX1P48742 SNORD12-201ENST00000391002 90 ntBASIC1.07□□□□□ -2.24
LHX1P48742 RPS23P4-201ENST00000487908 423 ntBASIC1.07□□□□□ -2.24
LHX1P48742 SNORD79.1-201ENST00000516069 84 ntBASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 148.9 ms