Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AL121655.1-201ENST00000605811 308 ntBASIC0.48□□□□□ -2.33
RFX3P48380 AC011373.1-201ENST00000607270 237 ntBASIC0.48□□□□□ -2.33
RFX3P48380 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.48□□□□□ -2.33
RFX3P48380 MIR548AY-201ENST00000617669 107 ntBASIC0.48□□□□□ -2.33
RFX3P48380 AC010487.4-201ENST00000637027 61 ntBASIC0.48□□□□□ -2.33
RFX3P48380 SNORD114-23-201ENST00000363536 72 ntBASIC0.47□□□□□ -2.33
RFX3P48380 SNORD18A-201ENST00000363753 72 ntBASIC0.47□□□□□ -2.33
RFX3P48380 Y_RNA.187-201ENST00000363918 113 ntBASIC0.47□□□□□ -2.33
RFX3P48380 RNU6-945P-201ENST00000383947 107 ntBASIC0.47□□□□□ -2.33
RFX3P48380 SNORD63-201ENST00000384262 68 ntBASIC0.47□□□□□ -2.33
RFX3P48380 SNORD116-29-201ENST00000384516 83 ntBASIC0.47□□□□□ -2.33
RFX3P48380 RNY1P4-201ENST00000384595 115 ntBASIC0.47□□□□□ -2.33
RFX3P48380 RNU6-1248P-201ENST00000391096 64 ntBASIC0.47□□□□□ -2.33
RFX3P48380 MIR1827-201ENST00000408549 66 ntBASIC0.47□□□□□ -2.33
RFX3P48380 MTCO2P27-201ENST00000420740 428 ntBASIC0.47□□□□□ -2.33
RFX3P48380 AF228730.4-201ENST00000421457 183 ntBASIC0.47□□□□□ -2.33
RFX3P48380 AC098934.3-201ENST00000430450 190 ntBASIC0.47□□□□□ -2.33
RFX3P48380 SNRPGP14-201ENST00000435400 219 ntBASIC0.47□□□□□ -2.33
RFX3P48380 RNU7-152P-201ENST00000458982 64 ntBASIC0.47□□□□□ -2.33
RFX3P48380 RNU6-496P-201ENST00000516145 99 ntBASIC0.47□□□□□ -2.33
RFX3P48380 RNU6-277P-201ENST00000516272 106 ntBASIC0.47□□□□□ -2.33
RFX3P48380 SNORA40.14-201ENST00000516543 86 ntBASIC0.47□□□□□ -2.33
RFX3P48380 AC018659.1-201ENST00000551083 169 ntBASIC0.47□□□□□ -2.33
RFX3P48380 RPS29P30-201ENST00000600975 111 ntBASIC0.47□□□□□ -2.33
RFX3P48380 AC104695.3-201ENST00000604052 296 ntBASIC0.47□□□□□ -2.33
RFX3P48380 AL080274.1-201ENST00000605565 220 ntBASIC0.47□□□□□ -2.33
RFX3P48380 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.47□□□□□ -2.33
RFX3P48380 MIR6516-201ENST00000630554 81 ntBASIC0.47□□□□□ -2.33
RFX3P48380 MIR5087-201ENST00000635826 76 ntBASIC0.47□□□□□ -2.33
RFX3P48380 MTND4LP32-201ENST00000636111 270 ntBASIC0.47□□□□□ -2.33
RFX3P48380 Y_RNA.39-201ENST00000362620 98 ntBASIC0.46□□□□□ -2.34
RFX3P48380 RNU6-1209P-201ENST00000363655 107 ntBASIC0.46□□□□□ -2.34
RFX3P48380 Y_RNA.168-201ENST00000363740 102 ntBASIC0.46□□□□□ -2.34
RFX3P48380 RNU6-674P-201ENST00000363831 107 ntBASIC0.46□□□□□ -2.34
RFX3P48380 RNA5SP499-201ENST00000363982 119 ntBASIC0.46□□□□□ -2.34
RFX3P48380 SNORA1.2-201ENST00000365189 134 ntBASIC0.46□□□□□ -2.34
RFX3P48380 RNU1-115P-201ENST00000365329 160 ntBASIC0.46□□□□□ -2.34
RFX3P48380 RNU6-396P-201ENST00000365369 105 ntBASIC0.46□□□□□ -2.34
RFX3P48380 Y_RNA.526-201ENST00000384572 110 ntBASIC0.46□□□□□ -2.34
RFX3P48380 Y_RNA.537-201ENST00000384626 109 ntBASIC0.46□□□□□ -2.34
RFX3P48380 AL590004.1-201ENST00000405321 300 ntBASIC0.46□□□□□ -2.34
RFX3P48380 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.46□□□□□ -2.34
RFX3P48380 DEFB117-201ENST00000602356 141 ntBASIC0.46□□□□□ -2.34
RFX3P48380 MIR6779-201ENST00000617283 64 ntBASIC0.46□□□□□ -2.34
RFX3P48380 MIR1-1-201ENST00000362147 71 ntBASIC0.45□□□□□ -2.34
RFX3P48380 Y_RNA.70-201ENST00000362886 110 ntBASIC0.45□□□□□ -2.34
RFX3P48380 SNORD81.1-201ENST00000363064 77 ntBASIC0.45□□□□□ -2.34
RFX3P48380 RNU6-268P-201ENST00000364174 107 ntBASIC0.45□□□□□ -2.34
RFX3P48380 U8.7-201ENST00000364940 136 ntBASIC0.45□□□□□ -2.34
RFX3P48380 Y_RNA.458-201ENST00000384240 102 ntBASIC0.45□□□□□ -2.34
RFX3P48380 MIR193B-201ENST00000384907 83 ntBASIC0.45□□□□□ -2.34
RFX3P48380 SNORD105-201ENST00000386910 85 ntBASIC0.45□□□□□ -2.34
RFX3P48380 MT-TN-201ENST00000387400 73 ntBASIC0.45□□□□□ -2.34
RFX3P48380 SNORD28B-201ENST00000390993 75 ntBASIC0.45□□□□□ -2.34
RFX3P48380 RNU1-119P-201ENST00000391122 165 ntBASIC0.45□□□□□ -2.34
RFX3P48380 U8.17-201ENST00000391292 132 ntBASIC0.45□□□□□ -2.34
RFX3P48380 AC244098.3-201ENST00000424803 96 ntBASIC0.45□□□□□ -2.34
RFX3P48380 RNU6-437P-201ENST00000459408 95 ntBASIC0.45□□□□□ -2.34
RFX3P48380 SCARNA8-201ENST00000515924 131 ntBASIC0.45□□□□□ -2.34
RFX3P48380 RNU7-110P-201ENST00000516891 62 ntBASIC0.45□□□□□ -2.34
RFX3P48380 AC008507.4-201ENST00000585464 127 ntBASIC0.45□□□□□ -2.34
RFX3P48380 AC243829.3-201ENST00000622177 108 ntBASIC0.45□□□□□ -2.34
RFX3P48380 MIR1302-1-201ENST00000637932 143 ntBASIC0.45□□□□□ -2.34
RFX3P48380 Y_RNA.376-201ENST00000365638 108 ntBASIC0.44□□□□□ -2.34
RFX3P48380 SNORA2B-201ENST00000384583 137 ntBASIC0.44□□□□□ -2.34
RFX3P48380 Y_RNA.551-201ENST00000384661 102 ntBASIC0.44□□□□□ -2.34
RFX3P48380 RNU6-21P-201ENST00000384710 107 ntBASIC0.44□□□□□ -2.34
RFX3P48380 AC114737.2-201ENST00000421583 173 ntBASIC0.44□□□□□ -2.34
RFX3P48380 U8.20-201ENST00000459445 131 ntBASIC0.44□□□□□ -2.34
RFX3P48380 NDUFA4P2-201ENST00000489989 244 ntBASIC0.44□□□□□ -2.34
RFX3P48380 AC011195.1-201ENST00000578177 177 ntBASIC0.44□□□□□ -2.34
RFX3P48380 UBE2V2P2-201ENST00000587677 504 ntBASIC0.44□□□□□ -2.34
RFX3P48380 Z83818.1-201ENST00000603584 150 ntBASIC0.44□□□□□ -2.34
RFX3P48380 AL132765.2-201ENST00000610812 351 ntBASIC0.44□□□□□ -2.34
RFX3P48380 AC006441.5-201ENST00000612680 209 ntBASIC0.44□□□□□ -2.34
RFX3P48380 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.44□□□□□ -2.34
RFX3P48380 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.43□□□□□ -2.34
RFX3P48380 MIR377-201ENST00000362145 69 ntBASIC0.43□□□□□ -2.34
RFX3P48380 RNU6-1115P-201ENST00000362490 106 ntBASIC0.43□□□□□ -2.34
RFX3P48380 RNU6-654P-201ENST00000364373 107 ntBASIC0.43□□□□□ -2.34
RFX3P48380 Y_RNA.252-201ENST00000364556 101 ntBASIC0.43□□□□□ -2.34
RFX3P48380 Y_RNA.439-201ENST00000384119 94 ntBASIC0.43□□□□□ -2.34
RFX3P48380 SNORA50A-201ENST00000384225 134 ntBASIC0.43□□□□□ -2.34
RFX3P48380 SNORA51.10-201ENST00000384418 136 ntBASIC0.43□□□□□ -2.34
RFX3P48380 AL160004.2-201ENST00000432935 350 ntBASIC0.43□□□□□ -2.34
RFX3P48380 RBMX2P4-201ENST00000441256 376 ntBASIC0.43□□□□□ -2.34
RFX3P48380 MIR1273G-201ENST00000577677 100 ntBASIC0.43□□□□□ -2.34
RFX3P48380 AC084781.2-201ENST00000615568 161 ntBASIC0.43□□□□□ -2.34
RFX3P48380 AL606534.2-204ENST00000635008 178 ntBASIC0.43□□□□□ -2.34
RFX3P48380 RNY1P8-201ENST00000383970 114 ntBASIC0.42□□□□□ -2.34
RFX3P48380 MTCO2P33-201ENST00000402100 465 ntBASIC0.42□□□□□ -2.34
RFX3P48380 RNA5SP193-201ENST00000410353 107 ntBASIC0.42□□□□□ -2.34
RFX3P48380 SNORA36B-201ENST00000410438 131 ntBASIC0.42□□□□□ -2.34
RFX3P48380 RNU6-847P-201ENST00000411115 108 ntBASIC0.42□□□□□ -2.34
RFX3P48380 FGF7P4-201ENST00000509595 295 ntBASIC0.42□□□□□ -2.34
RFX3P48380 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.42□□□□□ -2.34
RFX3P48380 MIR4300-201ENST00000581016 96 ntBASIC0.42□□□□□ -2.34
RFX3P48380 AC092447.9-201ENST00000603395 144 ntBASIC0.42□□□□□ -2.34
RFX3P48380 RNU6-580P-201ENST00000365159 107 ntBASIC0.41□□□□□ -2.34
RFX3P48380 RNY3-201ENST00000365484 102 ntBASIC0.41□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms