Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AC015688.6-201ENST00000577737 104 ntBASIC1.56□□□□□ -2.16
SHMT1P34896 MIR5688-201ENST00000580619 83 ntBASIC1.56□□□□□ -2.16
SHMT1P34896 MIR8063-201ENST00000621930 81 ntBASIC1.56□□□□□ -2.16
SHMT1P34896 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.56□□□□□ -2.16
SHMT1P34896 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
SHMT1P34896 Y_RNA.122-201ENST00000363331 96 ntBASIC1.55□□□□□ -2.16
SHMT1P34896 RNU6-1209P-201ENST00000363655 107 ntBASIC1.55□□□□□ -2.16
SHMT1P34896 Y_RNA.796-201ENST00000364268 102 ntBASIC1.55□□□□□ -2.16
SHMT1P34896 Y_RNA.799-201ENST00000364992 102 ntBASIC1.55□□□□□ -2.16
SHMT1P34896 RNU6-969P-201ENST00000383900 105 ntBASIC1.55□□□□□ -2.16
SHMT1P34896 RNU6-574P-201ENST00000384265 107 ntBASIC1.55□□□□□ -2.16
SHMT1P34896 RNU6-163P-201ENST00000384396 106 ntBASIC1.55□□□□□ -2.16
SHMT1P34896 SNORA40.6-201ENST00000391153 128 ntBASIC1.55□□□□□ -2.16
SHMT1P34896 SNORD2.1-201ENST00000458762 69 ntBASIC1.55□□□□□ -2.16
SHMT1P34896 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.55□□□□□ -2.16
SHMT1P34896 Y_RNA.673-201ENST00000516306 88 ntBASIC1.55□□□□□ -2.16
SHMT1P34896 SUMO2P16-201ENST00000519475 264 ntBASIC1.55□□□□□ -2.16
SHMT1P34896 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.55□□□□□ -2.16
SHMT1P34896 MIR4724-201ENST00000579485 89 ntBASIC1.55□□□□□ -2.16
SHMT1P34896 MIR4282-201ENST00000583613 67 ntBASIC1.55□□□□□ -2.16
SHMT1P34896 AC087685.1-201ENST00000587507 141 ntBASIC1.55□□□□□ -2.16
SHMT1P34896 AC120024.3-201ENST00000603167 156 ntBASIC1.55□□□□□ -2.16
SHMT1P34896 MIR367-201ENST00000362299 68 ntBASIC1.54□□□□□ -2.16
SHMT1P34896 RNU6-1084P-201ENST00000362498 107 ntBASIC1.54□□□□□ -2.16
SHMT1P34896 RNU6-833P-201ENST00000363486 107 ntBASIC1.54□□□□□ -2.16
SHMT1P34896 Y_RNA.277-201ENST00000364754 102 ntBASIC1.54□□□□□ -2.16
SHMT1P34896 RNA5SP259-201ENST00000365541 109 ntBASIC1.54□□□□□ -2.16
SHMT1P34896 MIR526A2-201ENST00000390198 65 ntBASIC1.54□□□□□ -2.16
SHMT1P34896 MIR891A-201ENST00000401237 79 ntBASIC1.54□□□□□ -2.16
SHMT1P34896 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.54□□□□□ -2.16
SHMT1P34896 RNU1-98P-201ENST00000458992 160 ntBASIC1.54□□□□□ -2.16
SHMT1P34896 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.54□□□□□ -2.16
SHMT1P34896 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.54□□□□□ -2.16
SHMT1P34896 Y_RNA.802-201ENST00000614892 130 ntBASIC1.54□□□□□ -2.16
SHMT1P34896 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.54□□□□□ -2.16
SHMT1P34896 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.54□□□□□ -2.16
SHMT1P34896 MIR302D-201ENST00000362275 68 ntBASIC1.53□□□□□ -2.16
SHMT1P34896 SNORD1A-201ENST00000364968 72 ntBASIC1.53□□□□□ -2.16
SHMT1P34896 snoU2-30.1-201ENST00000365012 70 ntBASIC1.53□□□□□ -2.16
SHMT1P34896 RNU6-338P-201ENST00000383888 105 ntBASIC1.53□□□□□ -2.16
SHMT1P34896 RNA5SP496-201ENST00000391240 109 ntBASIC1.53□□□□□ -2.16
SHMT1P34896 RNU1-78P-201ENST00000391248 165 ntBASIC1.53□□□□□ -2.16
SHMT1P34896 MIR1287-201ENST00000408492 90 ntBASIC1.53□□□□□ -2.16
SHMT1P34896 AC023449.1-201ENST00000454464 154 ntBASIC1.53□□□□□ -2.16
SHMT1P34896 RPL23AP91-201ENST00000569211 455 ntBASIC1.53□□□□□ -2.16
SHMT1P34896 MIR4422-201ENST00000581938 83 ntBASIC1.53□□□□□ -2.16
SHMT1P34896 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.53□□□□□ -2.16
SHMT1P34896 RNU6-199P-201ENST00000362954 107 ntBASIC1.52□□□□□ -2.17
SHMT1P34896 Y_RNA.242-201ENST00000364473 110 ntBASIC1.52□□□□□ -2.17
SHMT1P34896 SNORA8.3-201ENST00000384679 139 ntBASIC1.52□□□□□ -2.17
SHMT1P34896 MIR1276-201ENST00000408707 83 ntBASIC1.52□□□□□ -2.17
SHMT1P34896 RNU6-651P-201ENST00000411040 105 ntBASIC1.52□□□□□ -2.17
SHMT1P34896 PIGPP3-201ENST00000425307 415 ntBASIC1.52□□□□□ -2.17
SHMT1P34896 AC079140.2-201ENST00000506193 142 ntBASIC1.52□□□□□ -2.17
SHMT1P34896 AC114811.1-201ENST00000507207 168 ntBASIC1.52□□□□□ -2.17
SHMT1P34896 SNORD45.4-201ENST00000516629 73 ntBASIC1.52□□□□□ -2.17
SHMT1P34896 RNU6-1116P-201ENST00000517269 99 ntBASIC1.52□□□□□ -2.17
SHMT1P34896 AC068338.1-201ENST00000565567 176 ntBASIC1.52□□□□□ -2.17
SHMT1P34896 MIR4778-201ENST00000577635 80 ntBASIC1.52□□□□□ -2.17
SHMT1P34896 AC006006.1-201ENST00000603082 144 ntBASIC1.52□□□□□ -2.17
SHMT1P34896 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.52□□□□□ -2.17
SHMT1P34896 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
SHMT1P34896 Y_RNA.20-201ENST00000362479 113 ntBASIC1.51□□□□□ -2.17
SHMT1P34896 Y_RNA.401-201ENST00000383965 117 ntBASIC1.51□□□□□ -2.17
SHMT1P34896 MIR1278-201ENST00000408753 81 ntBASIC1.51□□□□□ -2.17
SHMT1P34896 RNU6-383P-201ENST00000410864 94 ntBASIC1.51□□□□□ -2.17
SHMT1P34896 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.51□□□□□ -2.17
SHMT1P34896 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.51□□□□□ -2.17
SHMT1P34896 HMGN2P32-201ENST00000444648 269 ntBASIC1.51□□□□□ -2.17
SHMT1P34896 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.51□□□□□ -2.17
SHMT1P34896 MIR4643-201ENST00000577473 78 ntBASIC1.51□□□□□ -2.17
SHMT1P34896 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.5□□□□□ -2.17
SHMT1P34896 SNORD27-201ENST00000363981 72 ntBASIC1.5□□□□□ -2.17
SHMT1P34896 Y_RNA.304-201ENST00000365011 112 ntBASIC1.5□□□□□ -2.17
SHMT1P34896 Y_RNA.447-201ENST00000384184 113 ntBASIC1.5□□□□□ -2.17
SHMT1P34896 Y_RNA.477-201ENST00000384352 108 ntBASIC1.5□□□□□ -2.17
SHMT1P34896 MIR499A-201ENST00000384903 122 ntBASIC1.5□□□□□ -2.17
SHMT1P34896 Y_RNA.618-201ENST00000410949 107 ntBASIC1.5□□□□□ -2.17
SHMT1P34896 AC245517.4-201ENST00000448601 281 ntBASIC1.5□□□□□ -2.17
SHMT1P34896 AC093850.1-201ENST00000454121 251 ntBASIC1.5□□□□□ -2.17
SHMT1P34896 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.5□□□□□ -2.17
SHMT1P34896 RNU6-1023P-201ENST00000516137 106 ntBASIC1.5□□□□□ -2.17
SHMT1P34896 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC1.5□□□□□ -2.17
SHMT1P34896 MIR3128-201ENST00000581957 66 ntBASIC1.5□□□□□ -2.17
SHMT1P34896 AL442067.1-201ENST00000613261 223 ntBASIC1.5□□□□□ -2.17
SHMT1P34896 AC068700.1-201ENST00000565862 3754 ntBASIC1.5□□□□□ -2.17
SHMT1P34896 SNORD14E-201ENST00000364009 85 ntBASIC1.49□□□□□ -2.17
SHMT1P34896 SNORA20.1-201ENST00000364790 130 ntBASIC1.49□□□□□ -2.17
SHMT1P34896 SNORD50B-201ENST00000364995 70 ntBASIC1.49□□□□□ -2.17
SHMT1P34896 Y_RNA.307-201ENST00000365022 117 ntBASIC1.49□□□□□ -2.17
SHMT1P34896 SNORA25.9-201ENST00000365087 128 ntBASIC1.49□□□□□ -2.17
SHMT1P34896 Y_RNA.336-201ENST00000365307 109 ntBASIC1.49□□□□□ -2.17
SHMT1P34896 RNU6-1065P-201ENST00000384513 106 ntBASIC1.49□□□□□ -2.17
SHMT1P34896 MIR626-201ENST00000385032 94 ntBASIC1.49□□□□□ -2.17
SHMT1P34896 MIR758-201ENST00000390227 88 ntBASIC1.49□□□□□ -2.17
SHMT1P34896 SNORD58.1-201ENST00000391313 66 ntBASIC1.49□□□□□ -2.17
SHMT1P34896 SNX2P2-201ENST00000424553 323 ntBASIC1.49□□□□□ -2.17
SHMT1P34896 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.49□□□□□ -2.17
SHMT1P34896 AC027119.1-201ENST00000440877 241 ntBASIC1.49□□□□□ -2.17
SHMT1P34896 SNORD11-201ENST00000459124 84 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms