Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SNORA75.2-201ENST00000391138 150 ntBASIC1.29□□□□□ -2.2
NPHP1O15259 SNORA75.3-201ENST00000391231 150 ntBASIC1.29□□□□□ -2.2
NPHP1O15259 MRPL35P3-201ENST00000421557 364 ntBASIC1.29□□□□□ -2.2
NPHP1O15259 RNU7-21P-201ENST00000459430 62 ntBASIC1.29□□□□□ -2.2
NPHP1O15259 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.29□□□□□ -2.2
NPHP1O15259 SNORA18.7-201ENST00000516910 131 ntBASIC1.29□□□□□ -2.2
NPHP1O15259 AC136628.3-201ENST00000521868 290 ntBASIC1.29□□□□□ -2.2
NPHP1O15259 JPX_2.1-201ENST00000614161 69 ntBASIC1.29□□□□□ -2.2
NPHP1O15259 MIR376A1-201ENST00000616574 68 ntBASIC1.29□□□□□ -2.2
NPHP1O15259 SNORD113-8-201ENST00000363497 74 ntBASIC1.28□□□□□ -2.2
NPHP1O15259 Y_RNA.158-201ENST00000363651 101 ntBASIC1.28□□□□□ -2.2
NPHP1O15259 SNORA72.4-201ENST00000384174 132 ntBASIC1.28□□□□□ -2.2
NPHP1O15259 MIR520C-201ENST00000385005 87 ntBASIC1.28□□□□□ -2.2
NPHP1O15259 RNU2-14P-201ENST00000411053 191 ntBASIC1.28□□□□□ -2.2
NPHP1O15259 RNU7-141P-201ENST00000459304 62 ntBASIC1.28□□□□□ -2.2
NPHP1O15259 Y_RNA.701-201ENST00000516812 110 ntBASIC1.28□□□□□ -2.2
NPHP1O15259 AC087685.1-201ENST00000587507 141 ntBASIC1.28□□□□□ -2.2
NPHP1O15259 RNU6-1209P-201ENST00000363655 107 ntBASIC1.27□□□□□ -2.21
NPHP1O15259 RNU6-1048P-201ENST00000364054 107 ntBASIC1.27□□□□□ -2.21
NPHP1O15259 RNU6-801P-201ENST00000364087 105 ntBASIC1.27□□□□□ -2.21
NPHP1O15259 Y_RNA.380-201ENST00000365663 111 ntBASIC1.27□□□□□ -2.21
NPHP1O15259 RNU6-1248P-201ENST00000391096 64 ntBASIC1.27□□□□□ -2.21
NPHP1O15259 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.27□□□□□ -2.21
NPHP1O15259 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.27□□□□□ -2.21
NPHP1O15259 SNORD124-201ENST00000459577 104 ntBASIC1.27□□□□□ -2.21
NPHP1O15259 RNU7-41P-201ENST00000515917 61 ntBASIC1.27□□□□□ -2.21
NPHP1O15259 RNU7-43P-201ENST00000516554 64 ntBASIC1.27□□□□□ -2.21
NPHP1O15259 MIR5000-201ENST00000577717 103 ntBASIC1.27□□□□□ -2.21
NPHP1O15259 MIR4764-201ENST00000580680 88 ntBASIC1.27□□□□□ -2.21
NPHP1O15259 AC007742.2-201ENST00000618226 398 ntBASIC1.27□□□□□ -2.21
NPHP1O15259 AC008163.1-202ENST00000636004 2889 ntBASIC1.27□□□□□ -2.21
NPHP1O15259 RNA5SP264-201ENST00000363115 107 ntBASIC1.26□□□□□ -2.21
NPHP1O15259 RNA5SP325-201ENST00000363756 130 ntBASIC1.26□□□□□ -2.21
NPHP1O15259 SNORD14E-201ENST00000364009 85 ntBASIC1.26□□□□□ -2.21
NPHP1O15259 Y_RNA.418-201ENST00000384029 102 ntBASIC1.26□□□□□ -2.21
NPHP1O15259 MTCYBP6-201ENST00000441810 138 ntBASIC1.26□□□□□ -2.21
NPHP1O15259 HSPE1P25-201ENST00000455484 251 ntBASIC1.26□□□□□ -2.21
NPHP1O15259 RNU6-437P-201ENST00000459408 95 ntBASIC1.26□□□□□ -2.21
NPHP1O15259 SNORD123-201ENST00000459473 70 ntBASIC1.26□□□□□ -2.21
NPHP1O15259 NDUFA4P2-201ENST00000489989 244 ntBASIC1.26□□□□□ -2.21
NPHP1O15259 RNA5SP436-201ENST00000516020 115 ntBASIC1.26□□□□□ -2.21
NPHP1O15259 RNU6-496P-201ENST00000516145 99 ntBASIC1.26□□□□□ -2.21
NPHP1O15259 AP003716.2-201ENST00000528260 108 ntBASIC1.26□□□□□ -2.21
NPHP1O15259 Y_RNA.105-201ENST00000363182 111 ntBASIC1.25□□□□□ -2.21
NPHP1O15259 RNU6-674P-201ENST00000363831 107 ntBASIC1.25□□□□□ -2.21
NPHP1O15259 Y_RNA.455-201ENST00000384230 98 ntBASIC1.25□□□□□ -2.21
NPHP1O15259 RNU6-102P-201ENST00000384485 104 ntBASIC1.25□□□□□ -2.21
NPHP1O15259 SNORA36B-201ENST00000410438 131 ntBASIC1.25□□□□□ -2.21
NPHP1O15259 RNU6-121P-201ENST00000410525 99 ntBASIC1.25□□□□□ -2.21
NPHP1O15259 RNU6-191P-201ENST00000516295 94 ntBASIC1.25□□□□□ -2.21
NPHP1O15259 MIR4680-201ENST00000580906 66 ntBASIC1.25□□□□□ -2.21
NPHP1O15259 AC012676.2-201ENST00000619258 186 ntBASIC1.25□□□□□ -2.21
NPHP1O15259 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
NPHP1O15259 RNU4-38P-201ENST00000364472 129 ntBASIC1.24□□□□□ -2.21
NPHP1O15259 SNORA22-201ENST00000383907 134 ntBASIC1.24□□□□□ -2.21
NPHP1O15259 Y_RNA.527-201ENST00000384573 102 ntBASIC1.24□□□□□ -2.21
NPHP1O15259 SNORA22C-201ENST00000384614 134 ntBASIC1.24□□□□□ -2.21
NPHP1O15259 SNORA26.5-201ENST00000391215 123 ntBASIC1.24□□□□□ -2.21
NPHP1O15259 Y_RNA.602-201ENST00000410535 92 ntBASIC1.24□□□□□ -2.21
NPHP1O15259 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.24□□□□□ -2.21
NPHP1O15259 RNU7-90P-201ENST00000459216 62 ntBASIC1.24□□□□□ -2.21
NPHP1O15259 UBL5P1-201ENST00000507979 193 ntBASIC1.24□□□□□ -2.21
NPHP1O15259 AC113195.1-201ENST00000579952 141 ntBASIC1.24□□□□□ -2.21
NPHP1O15259 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.24□□□□□ -2.21
NPHP1O15259 AC005357.1-201ENST00000588399 301 ntBASIC1.24□□□□□ -2.21
NPHP1O15259 Y_RNA.136-201ENST00000363444 102 ntBASIC1.23□□□□□ -2.21
NPHP1O15259 Y_RNA.202-201ENST00000364083 110 ntBASIC1.23□□□□□ -2.21
NPHP1O15259 Y_RNA.214-201ENST00000364201 112 ntBASIC1.23□□□□□ -2.21
NPHP1O15259 SNORD114-24-201ENST00000365029 72 ntBASIC1.23□□□□□ -2.21
NPHP1O15259 MIR200A-201ENST00000384875 90 ntBASIC1.23□□□□□ -2.21
NPHP1O15259 ELOCP20-201ENST00000422460 345 ntBASIC1.23□□□□□ -2.21
NPHP1O15259 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.23□□□□□ -2.21
NPHP1O15259 SNRPGP14-201ENST00000435400 219 ntBASIC1.23□□□□□ -2.21
NPHP1O15259 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.23□□□□□ -2.21
NPHP1O15259 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.23□□□□□ -2.21
NPHP1O15259 MIR2681-201ENST00000581814 105 ntBASIC1.23□□□□□ -2.21
NPHP1O15259 AL356055.1-201ENST00000602528 446 ntBASIC1.23□□□□□ -2.21
NPHP1O15259 AL355297.3-201ENST00000604082 446 ntBASIC1.23□□□□□ -2.21
NPHP1O15259 AL020996.3-201ENST00000606617 222 ntBASIC1.23□□□□□ -2.21
NPHP1O15259 MIR6857-201ENST00000613267 93 ntBASIC1.23□□□□□ -2.21
NPHP1O15259 Y_RNA.11-201ENST00000362375 109 ntBASIC1.22□□□□□ -2.21
NPHP1O15259 RNU4-90P-201ENST00000362773 141 ntBASIC1.22□□□□□ -2.21
NPHP1O15259 RNU6-770P-201ENST00000363929 105 ntBASIC1.22□□□□□ -2.21
NPHP1O15259 Y_RNA.276-201ENST00000364732 109 ntBASIC1.22□□□□□ -2.21
NPHP1O15259 RNU6-442P-201ENST00000383968 104 ntBASIC1.22□□□□□ -2.21
NPHP1O15259 Y_RNA.581-201ENST00000391017 97 ntBASIC1.22□□□□□ -2.21
NPHP1O15259 MIR1278-201ENST00000408753 81 ntBASIC1.22□□□□□ -2.21
NPHP1O15259 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.22□□□□□ -2.21
NPHP1O15259 RNU6-1137P-201ENST00000517073 99 ntBASIC1.22□□□□□ -2.21
NPHP1O15259 AC131281.1-201ENST00000522984 164 ntBASIC1.22□□□□□ -2.21
NPHP1O15259 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.22□□□□□ -2.21
NPHP1O15259 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.22□□□□□ -2.21
NPHP1O15259 MIR103A2-201ENST00000362154 78 ntBASIC1.21□□□□□ -2.22
NPHP1O15259 SNORA25.3-201ENST00000363205 127 ntBASIC1.21□□□□□ -2.22
NPHP1O15259 RNA5SP48-201ENST00000363969 126 ntBASIC1.21□□□□□ -2.22
NPHP1O15259 Y_RNA.205-201ENST00000364128 113 ntBASIC1.21□□□□□ -2.22
NPHP1O15259 SNORD38C-201ENST00000384381 69 ntBASIC1.21□□□□□ -2.22
NPHP1O15259 Y_RNA.569-201ENST00000384749 103 ntBASIC1.21□□□□□ -2.22
NPHP1O15259 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
NPHP1O15259 MIR1185-1-201ENST00000408598 86 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms