Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 RNU6-1007P-201ENST00000516586 107 ntBASIC1.51□□□□□ -2.17
SMCHD1A6NHR9 RNU7-128P-201ENST00000517247 62 ntBASIC1.51□□□□□ -2.17
SMCHD1A6NHR9 AL929325.1-201ENST00000603096 117 ntBASIC1.51□□□□□ -2.17
SMCHD1A6NHR9 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
SMCHD1A6NHR9 Y_RNA.8-201ENST00000362353 102 ntBASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 RNU4-10P-201ENST00000364383 140 ntBASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 Y_RNA.265-201ENST00000364677 108 ntBASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 RNU6-818P-201ENST00000364837 108 ntBASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 RNU6-969P-201ENST00000383900 105 ntBASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 MTCO2P33-201ENST00000402100 465 ntBASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 RNU2-64P-201ENST00000411315 191 ntBASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 RPS27P16-201ENST00000425758 201 ntBASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 MIR2681-201ENST00000581814 105 ntBASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 AL021707.8-201ENST00000609428 183 ntBASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 Y_RNA.200-201ENST00000364018 102 ntBASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 Y_RNA.634-201ENST00000364811 113 ntBASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 RNU6-1323P-201ENST00000384025 107 ntBASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 PIGPP3-201ENST00000425307 415 ntBASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 PGBD4P5-201ENST00000445958 426 ntBASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 RNU6-693P-201ENST00000516134 107 ntBASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 RNU6-191P-201ENST00000516295 94 ntBASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 RNA5SP220-201ENST00000516298 104 ntBASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 AL773524.1-201ENST00000614065 229 ntBASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 U1.36-201ENST00000620684 176 ntBASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
SMCHD1A6NHR9 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.49□□□□□ -2.17
SMCHD1A6NHR9 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.49□□□□□ -2.17
SMCHD1A6NHR9 MIR934-201ENST00000401241 83 ntBASIC1.49□□□□□ -2.17
SMCHD1A6NHR9 RNU6-126P-201ENST00000516685 103 ntBASIC1.49□□□□□ -2.17
SMCHD1A6NHR9 RPL23AP91-201ENST00000569211 455 ntBASIC1.49□□□□□ -2.17
SMCHD1A6NHR9 AC120024.3-201ENST00000603167 156 ntBASIC1.49□□□□□ -2.17
SMCHD1A6NHR9 AC004832.4-201ENST00000608952 331 ntBASIC1.49□□□□□ -2.17
SMCHD1A6NHR9 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.49□□□□□ -2.17
SMCHD1A6NHR9 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC1.49□□□□□ -2.17
SMCHD1A6NHR9 Y_RNA.262-201ENST00000364641 102 ntBASIC1.49□□□□□ -2.17
SMCHD1A6NHR9 RNU6-326P-201ENST00000365480 107 ntBASIC1.49□□□□□ -2.17
SMCHD1A6NHR9 RNU6-662P-201ENST00000384253 104 ntBASIC1.49□□□□□ -2.17
SMCHD1A6NHR9 Y_RNA.477-201ENST00000384352 108 ntBASIC1.49□□□□□ -2.17
SMCHD1A6NHR9 RNU6-424P-201ENST00000384367 105 ntBASIC1.49□□□□□ -2.17
SMCHD1A6NHR9 AC109810.1-201ENST00000534066 224 ntBASIC1.49□□□□□ -2.17
SMCHD1A6NHR9 AC068338.1-201ENST00000565567 176 ntBASIC1.49□□□□□ -2.17
SMCHD1A6NHR9 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
SMCHD1A6NHR9 AL359851.1-201ENST00000569460 4997 ntBASIC1.48□□□□□ -2.17
SMCHD1A6NHR9 AL442644.1-201ENST00000454390 3105 ntBASIC1.48□□□□□ -2.17
SMCHD1A6NHR9 Y_RNA.257-201ENST00000364596 102 ntBASIC1.48□□□□□ -2.17
SMCHD1A6NHR9 RNU6-923P-201ENST00000364753 107 ntBASIC1.48□□□□□ -2.17
SMCHD1A6NHR9 RNU6-1080P-201ENST00000383982 107 ntBASIC1.48□□□□□ -2.17
SMCHD1A6NHR9 RNU6-440P-201ENST00000390882 105 ntBASIC1.48□□□□□ -2.17
SMCHD1A6NHR9 RNA5SP212-201ENST00000391223 107 ntBASIC1.48□□□□□ -2.17
SMCHD1A6NHR9 SNORA79-201ENST00000408376 140 ntBASIC1.48□□□□□ -2.17
SMCHD1A6NHR9 Y_RNA.626-201ENST00000411288 95 ntBASIC1.48□□□□□ -2.17
SMCHD1A6NHR9 AL627230.6-201ENST00000611129 280 ntBASIC1.48□□□□□ -2.17
SMCHD1A6NHR9 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 RNU1-93P-201ENST00000364704 169 ntBASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 RNY4P28-201ENST00000365281 93 ntBASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 Y_RNA.569-201ENST00000384749 103 ntBASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 RN7SKP200-201ENST00000410564 320 ntBASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 AC091959.1-201ENST00000495857 238 ntBASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 SUMO2P16-201ENST00000519475 264 ntBASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 MIR7974-201ENST00000615835 79 ntBASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 AC068647.2-201ENST00000637380 353 ntBASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 AC134026.1-201ENST00000623249 2239 ntBASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 SNORD1A-201ENST00000364968 72 ntBASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 RNU6-383P-201ENST00000410864 94 ntBASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 RNU6-1135P-201ENST00000411083 103 ntBASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 RPL31P63-201ENST00000422565 375 ntBASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 Y_RNA.644-201ENST00000459006 113 ntBASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 SCARNA8-201ENST00000515924 131 ntBASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 RNVU1-2-201ENST00000516326 135 ntBASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 Y_RNA.674-201ENST00000516362 113 ntBASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 MIR4709-201ENST00000577272 72 ntBASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 AC130289.1-201ENST00000577321 73 ntBASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.47□□□□□ -2.17
SMCHD1A6NHR9 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.46□□□□□ -2.18
SMCHD1A6NHR9 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
SMCHD1A6NHR9 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
SMCHD1A6NHR9 Y_RNA.66-201ENST00000362862 102 ntBASIC1.46□□□□□ -2.18
SMCHD1A6NHR9 SNORA4.2-201ENST00000365313 147 ntBASIC1.46□□□□□ -2.18
SMCHD1A6NHR9 SNORA12.1-201ENST00000390873 148 ntBASIC1.46□□□□□ -2.18
SMCHD1A6NHR9 AC079140.2-201ENST00000506193 142 ntBASIC1.46□□□□□ -2.18
SMCHD1A6NHR9 SNORD111.1-201ENST00000516421 86 ntBASIC1.46□□□□□ -2.18
SMCHD1A6NHR9 RNU7-193P-201ENST00000516723 65 ntBASIC1.46□□□□□ -2.18
SMCHD1A6NHR9 MIR4431-201ENST00000579990 94 ntBASIC1.46□□□□□ -2.18
SMCHD1A6NHR9 AC006441.5-201ENST00000612680 209 ntBASIC1.46□□□□□ -2.18
SMCHD1A6NHR9 SNORA33-201ENST00000363664 130 ntBASIC1.45□□□□□ -2.18
SMCHD1A6NHR9 SNORD45.3-201ENST00000363836 72 ntBASIC1.45□□□□□ -2.18
SMCHD1A6NHR9 RNU6-997P-201ENST00000384725 107 ntBASIC1.45□□□□□ -2.18
SMCHD1A6NHR9 RNA5SP496-201ENST00000391240 109 ntBASIC1.45□□□□□ -2.18
SMCHD1A6NHR9 SNRPGP14-201ENST00000435400 219 ntBASIC1.45□□□□□ -2.18
SMCHD1A6NHR9 AC015922.2-201ENST00000435593 184 ntBASIC1.45□□□□□ -2.18
SMCHD1A6NHR9 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.45□□□□□ -2.18
SMCHD1A6NHR9 RNA5SP480-201ENST00000516840 109 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 118 ms