Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.09□□□□□ -2.07
PCDHA1Q9Y5I3 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.09□□□□□ -2.07
PCDHA1Q9Y5I3 MIR4762-201ENST00000585261 75 ntBASIC2.09□□□□□ -2.07
PCDHA1Q9Y5I3 AL591926.4-201ENST00000616895 298 ntBASIC2.09□□□□□ -2.07
PCDHA1Q9Y5I3 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.08
PCDHA1Q9Y5I3 Y_RNA.238-201ENST00000364441 102 ntBASIC2.08□□□□□ -2.08
PCDHA1Q9Y5I3 SNORA16.1-201ENST00000364597 132 ntBASIC2.08□□□□□ -2.08
PCDHA1Q9Y5I3 Y_RNA.265-201ENST00000364677 108 ntBASIC2.08□□□□□ -2.08
PCDHA1Q9Y5I3 SNORA4.2-201ENST00000365313 147 ntBASIC2.08□□□□□ -2.08
PCDHA1Q9Y5I3 Y_RNA.571-201ENST00000384753 98 ntBASIC2.08□□□□□ -2.08
PCDHA1Q9Y5I3 HSPE1P9-201ENST00000440046 311 ntBASIC2.08□□□□□ -2.08
PCDHA1Q9Y5I3 SNORD11-201ENST00000459124 84 ntBASIC2.08□□□□□ -2.08
PCDHA1Q9Y5I3 SCARNA8-201ENST00000515924 131 ntBASIC2.08□□□□□ -2.08
PCDHA1Q9Y5I3 SNORA31.17-201ENST00000516953 127 ntBASIC2.08□□□□□ -2.08
PCDHA1Q9Y5I3 AP002392.1-201ENST00000537692 208 ntBASIC2.08□□□□□ -2.08
PCDHA1Q9Y5I3 RPL23AP91-201ENST00000569211 455 ntBASIC2.08□□□□□ -2.08
PCDHA1Q9Y5I3 JPX_2.1-201ENST00000614161 69 ntBASIC2.08□□□□□ -2.08
PCDHA1Q9Y5I3 AC084768.2-201ENST00000622736 221 ntBASIC2.08□□□□□ -2.08
PCDHA1Q9Y5I3 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
PCDHA1Q9Y5I3 MIR126-201ENST00000362291 85 ntBASIC2.07□□□□□ -2.08
PCDHA1Q9Y5I3 U8.5-201ENST00000364528 136 ntBASIC2.07□□□□□ -2.08
PCDHA1Q9Y5I3 RNU6-1228P-201ENST00000391014 107 ntBASIC2.07□□□□□ -2.08
PCDHA1Q9Y5I3 AL034345.1-201ENST00000407768 123 ntBASIC2.07□□□□□ -2.08
PCDHA1Q9Y5I3 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.07□□□□□ -2.08
PCDHA1Q9Y5I3 FTH1P12-201ENST00000432137 551 ntBASIC2.07□□□□□ -2.08
PCDHA1Q9Y5I3 SNRPGP10-201ENST00000432323 225 ntBASIC2.07□□□□□ -2.08
PCDHA1Q9Y5I3 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.07□□□□□ -2.08
PCDHA1Q9Y5I3 snoU13.27-201ENST00000459278 104 ntBASIC2.07□□□□□ -2.08
PCDHA1Q9Y5I3 OR9P1P-201ENST00000496431 281 ntBASIC2.07□□□□□ -2.08
PCDHA1Q9Y5I3 Y_RNA.714-201ENST00000517065 90 ntBASIC2.07□□□□□ -2.08
PCDHA1Q9Y5I3 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.07□□□□□ -2.08
PCDHA1Q9Y5I3 AC098479.1-201ENST00000609225 154 ntBASIC2.07□□□□□ -2.08
PCDHA1Q9Y5I3 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
PCDHA1Q9Y5I3 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
PCDHA1Q9Y5I3 RNU1-17P-201ENST00000363022 152 ntBASIC2.06□□□□□ -2.08
PCDHA1Q9Y5I3 Y_RNA.233-201ENST00000364407 101 ntBASIC2.06□□□□□ -2.08
PCDHA1Q9Y5I3 RNU6-1031P-201ENST00000384773 107 ntBASIC2.06□□□□□ -2.08
PCDHA1Q9Y5I3 MIR522-201ENST00000385071 87 ntBASIC2.06□□□□□ -2.08
PCDHA1Q9Y5I3 AC244636.1-201ENST00000421152 228 ntBASIC2.06□□□□□ -2.08
PCDHA1Q9Y5I3 AC023449.1-201ENST00000454464 154 ntBASIC2.06□□□□□ -2.08
PCDHA1Q9Y5I3 RNU6-1007P-201ENST00000516586 107 ntBASIC2.06□□□□□ -2.08
PCDHA1Q9Y5I3 RNU6-453P-201ENST00000516819 85 ntBASIC2.06□□□□□ -2.08
PCDHA1Q9Y5I3 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.06□□□□□ -2.08
PCDHA1Q9Y5I3 AC022254.1-201ENST00000567857 235 ntBASIC2.06□□□□□ -2.08
PCDHA1Q9Y5I3 MIR4744-201ENST00000581563 82 ntBASIC2.06□□□□□ -2.08
PCDHA1Q9Y5I3 AC087685.1-201ENST00000587507 141 ntBASIC2.06□□□□□ -2.08
PCDHA1Q9Y5I3 AL359851.1-201ENST00000569460 4997 ntBASIC2.06□□□□□ -2.08
PCDHA1Q9Y5I3 RNU4-70P-201ENST00000384579 139 ntBASIC2.05□□□□□ -2.08
PCDHA1Q9Y5I3 SNORA12.1-201ENST00000390873 148 ntBASIC2.05□□□□□ -2.08
PCDHA1Q9Y5I3 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.05□□□□□ -2.08
PCDHA1Q9Y5I3 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.05□□□□□ -2.08
PCDHA1Q9Y5I3 STAG3L5P-204ENST00000443759 179 ntBASIC2.05□□□□□ -2.08
PCDHA1Q9Y5I3 RNA5SP57-201ENST00000459463 123 ntBASIC2.05□□□□□ -2.08
PCDHA1Q9Y5I3 MIR4709-201ENST00000577272 72 ntBASIC2.05□□□□□ -2.08
PCDHA1Q9Y5I3 RNU2-4P-201ENST00000606190 192 ntBASIC2.05□□□□□ -2.08
PCDHA1Q9Y5I3 MIR8081-201ENST00000611533 95 ntBASIC2.05□□□□□ -2.08
PCDHA1Q9Y5I3 uc_338.4-201ENST00000616635 176 ntBASIC2.05□□□□□ -2.08
PCDHA1Q9Y5I3 FTX_2.1-201ENST00000618816 94 ntBASIC2.05□□□□□ -2.08
PCDHA1Q9Y5I3 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.05□□□□□ -2.08
PCDHA1Q9Y5I3 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
PCDHA1Q9Y5I3 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
PCDHA1Q9Y5I3 Y_RNA.75-201ENST00000362927 97 ntBASIC2.04□□□□□ -2.08
PCDHA1Q9Y5I3 MIR17-201ENST00000385012 84 ntBASIC2.04□□□□□ -2.08
PCDHA1Q9Y5I3 RNU2-55P-201ENST00000411146 174 ntBASIC2.04□□□□□ -2.08
PCDHA1Q9Y5I3 RPL30P13-201ENST00000418873 348 ntBASIC2.04□□□□□ -2.08
PCDHA1Q9Y5I3 PIGPP3-201ENST00000425307 415 ntBASIC2.04□□□□□ -2.08
PCDHA1Q9Y5I3 AC245047.8-201ENST00000456455 284 ntBASIC2.04□□□□□ -2.08
PCDHA1Q9Y5I3 NDUFA4P2-201ENST00000489989 244 ntBASIC2.04□□□□□ -2.08
PCDHA1Q9Y5I3 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.04□□□□□ -2.08
PCDHA1Q9Y5I3 U6.106-201ENST00000636360 105 ntBASIC2.04□□□□□ -2.08
PCDHA1Q9Y5I3 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.04□□□□□ -2.08
PCDHA1Q9Y5I3 RNU4-52P-201ENST00000384209 138 ntBASIC2.03□□□□□ -2.08
PCDHA1Q9Y5I3 MT-TT-201ENST00000387460 66 ntBASIC2.03□□□□□ -2.08
PCDHA1Q9Y5I3 RNU6-578P-201ENST00000390980 103 ntBASIC2.03□□□□□ -2.08
PCDHA1Q9Y5I3 RNU6-131P-201ENST00000391144 107 ntBASIC2.03□□□□□ -2.08
PCDHA1Q9Y5I3 AL606845.1-201ENST00000404881 255 ntBASIC2.03□□□□□ -2.08
PCDHA1Q9Y5I3 SNORA25.15-201ENST00000516487 89 ntBASIC2.03□□□□□ -2.08
PCDHA1Q9Y5I3 RNU6-250P-201ENST00000516958 103 ntBASIC2.03□□□□□ -2.08
PCDHA1Q9Y5I3 MIR4419B-201ENST00000577260 68 ntBASIC2.03□□□□□ -2.08
PCDHA1Q9Y5I3 MIR4287-201ENST00000579398 78 ntBASIC2.03□□□□□ -2.08
PCDHA1Q9Y5I3 MIR3935-201ENST00000583472 104 ntBASIC2.03□□□□□ -2.08
PCDHA1Q9Y5I3 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 MIRLET7C-201ENST00000362160 84 ntBASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 SNORD68-201ENST00000363214 84 ntBASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 RNU6-682P-201ENST00000363843 106 ntBASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 Y_RNA.240-201ENST00000364469 95 ntBASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 Y_RNA.242-201ENST00000364473 110 ntBASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 RNU6-1138P-201ENST00000365359 106 ntBASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 Y_RNA.587-201ENST00000391210 103 ntBASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 AL627390.1-201ENST00000396055 340 ntBASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 SUMO2P12-201ENST00000405924 140 ntBASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 RNA5SP489-201ENST00000410986 109 ntBASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 RPL23AP6-201ENST00000446637 472 ntBASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 Y_RNA.797-201ENST00000515977 94 ntBASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 SNORD77.4-201ENST00000516158 81 ntBASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 AC022559.1-201ENST00000520905 205 ntBASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 MRPS18CP4-201ENST00000535821 231 ntBASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.02□□□□□ -2.09
PCDHA1Q9Y5I3 MIR4299-201ENST00000577899 72 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 129.8 ms