Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 RNU6-144P-201ENST00000383951 107 ntBASIC2.72□□□□□ -1.97
CCDC9Q9Y3X0 RNU6-424P-201ENST00000384367 105 ntBASIC2.72□□□□□ -1.97
CCDC9Q9Y3X0 AL139156.1-201ENST00000412785 841 ntBASIC2.72□□□□□ -1.97
CCDC9Q9Y3X0 AL161935.2-201ENST00000414627 60 ntBASIC2.72□□□□□ -1.97
CCDC9Q9Y3X0 MLLT10P1-201ENST00000418346 262 ntBASIC2.72□□□□□ -1.97
CCDC9Q9Y3X0 SNORA25.15-201ENST00000516487 89 ntBASIC2.72□□□□□ -1.97
CCDC9Q9Y3X0 MIR2681-201ENST00000581814 105 ntBASIC2.72□□□□□ -1.97
CCDC9Q9Y3X0 FTX_2.1-201ENST00000618816 94 ntBASIC2.72□□□□□ -1.97
CCDC9Q9Y3X0 snoU18.1-201ENST00000629629 71 ntBASIC2.72□□□□□ -1.97
CCDC9Q9Y3X0 Y_RNA.29-201ENST00000362570 113 ntBASIC2.71□□□□□ -1.98
CCDC9Q9Y3X0 Y_RNA.180-201ENST00000363867 113 ntBASIC2.71□□□□□ -1.98
CCDC9Q9Y3X0 Y_RNA.352-201ENST00000365439 102 ntBASIC2.71□□□□□ -1.98
CCDC9Q9Y3X0 Y_RNA.539-201ENST00000384635 107 ntBASIC2.71□□□□□ -1.98
CCDC9Q9Y3X0 MIR513A1-201ENST00000385138 129 ntBASIC2.71□□□□□ -1.98
CCDC9Q9Y3X0 MIR660-201ENST00000385235 97 ntBASIC2.71□□□□□ -1.98
CCDC9Q9Y3X0 U8.16-201ENST00000391279 133 ntBASIC2.71□□□□□ -1.98
CCDC9Q9Y3X0 snoU13.18-201ENST00000459483 104 ntBASIC2.71□□□□□ -1.98
CCDC9Q9Y3X0 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC9Q9Y3X0 MIR5692C2-201ENST00000577959 77 ntBASIC2.71□□□□□ -1.98
CCDC9Q9Y3X0 AL137847.3-201ENST00000611521 109 ntBASIC2.71□□□□□ -1.98
CCDC9Q9Y3X0 Y_RNA.224-201ENST00000364308 111 ntBASIC2.7□□□□□ -1.98
CCDC9Q9Y3X0 RNA5SP259-201ENST00000365541 109 ntBASIC2.7□□□□□ -1.98
CCDC9Q9Y3X0 AL392103.1-201ENST00000447000 198 ntBASIC2.7□□□□□ -1.98
CCDC9Q9Y3X0 AC130289.1-201ENST00000577321 73 ntBASIC2.7□□□□□ -1.98
CCDC9Q9Y3X0 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
CCDC9Q9Y3X0 AL157777.2-201ENST00000258070 137 ntBASIC2.69□□□□□ -1.98
CCDC9Q9Y3X0 Y_RNA.54-201ENST00000362766 105 ntBASIC2.69□□□□□ -1.98
CCDC9Q9Y3X0 RNY1-201ENST00000364228 113 ntBASIC2.69□□□□□ -1.98
CCDC9Q9Y3X0 Y_RNA.270-201ENST00000364693 104 ntBASIC2.69□□□□□ -1.98
CCDC9Q9Y3X0 RNU6-740P-201ENST00000364734 105 ntBASIC2.69□□□□□ -1.98
CCDC9Q9Y3X0 Y_RNA.293-201ENST00000364908 93 ntBASIC2.69□□□□□ -1.98
CCDC9Q9Y3X0 SNORA48.3-201ENST00000391081 134 ntBASIC2.69□□□□□ -1.98
CCDC9Q9Y3X0 SNORD58.1-201ENST00000391313 66 ntBASIC2.69□□□□□ -1.98
CCDC9Q9Y3X0 RNU4-62P-201ENST00000410125 130 ntBASIC2.69□□□□□ -1.98
CCDC9Q9Y3X0 RNU2-40P-201ENST00000410833 196 ntBASIC2.69□□□□□ -1.98
CCDC9Q9Y3X0 SNRPGP10-201ENST00000432323 225 ntBASIC2.69□□□□□ -1.98
CCDC9Q9Y3X0 RNU7-12P-201ENST00000516030 62 ntBASIC2.69□□□□□ -1.98
CCDC9Q9Y3X0 RNU4-71P-201ENST00000516258 113 ntBASIC2.69□□□□□ -1.98
CCDC9Q9Y3X0 Y_RNA.679-201ENST00000516416 91 ntBASIC2.69□□□□□ -1.98
CCDC9Q9Y3X0 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.69□□□□□ -1.98
CCDC9Q9Y3X0 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.69□□□□□ -1.98
CCDC9Q9Y3X0 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
CCDC9Q9Y3X0 RNU6-674P-201ENST00000363831 107 ntBASIC2.68□□□□□ -1.98
CCDC9Q9Y3X0 Y_RNA.297-201ENST00000364950 91 ntBASIC2.68□□□□□ -1.98
CCDC9Q9Y3X0 RNU6-163P-201ENST00000384396 106 ntBASIC2.68□□□□□ -1.98
CCDC9Q9Y3X0 RNU6-131P-201ENST00000391144 107 ntBASIC2.68□□□□□ -1.98
CCDC9Q9Y3X0 MIR934-201ENST00000401241 83 ntBASIC2.68□□□□□ -1.98
CCDC9Q9Y3X0 AL603910.2-201ENST00000407268 136 ntBASIC2.68□□□□□ -1.98
CCDC9Q9Y3X0 Y_RNA.590-201ENST00000410140 107 ntBASIC2.68□□□□□ -1.98
CCDC9Q9Y3X0 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC9Q9Y3X0 AC003989.2-201ENST00000440224 169 ntBASIC2.68□□□□□ -1.98
CCDC9Q9Y3X0 CYCTP-201ENST00000504253 315 ntBASIC2.68□□□□□ -1.98
CCDC9Q9Y3X0 SUMO2P16-201ENST00000519475 264 ntBASIC2.68□□□□□ -1.98
CCDC9Q9Y3X0 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC9Q9Y3X0 AC120024.3-201ENST00000603167 156 ntBASIC2.68□□□□□ -1.98
CCDC9Q9Y3X0 BX284668.6-201ENST00000606899 438 ntBASIC2.68□□□□□ -1.98
CCDC9Q9Y3X0 AL008718.3-201ENST00000610217 321 ntBASIC2.68□□□□□ -1.98
CCDC9Q9Y3X0 AC004792.1-201ENST00000614523 137 ntBASIC2.68□□□□□ -1.98
CCDC9Q9Y3X0 Y_RNA.65-201ENST00000362846 100 ntBASIC2.67□□□□□ -1.98
CCDC9Q9Y3X0 Y_RNA.150-201ENST00000363562 102 ntBASIC2.67□□□□□ -1.98
CCDC9Q9Y3X0 U8.5-201ENST00000364528 136 ntBASIC2.67□□□□□ -1.98
CCDC9Q9Y3X0 AP1B1P2-201ENST00000416196 106 ntBASIC2.67□□□□□ -1.98
CCDC9Q9Y3X0 AL138752.1-201ENST00000452964 351 ntBASIC2.67□□□□□ -1.98
CCDC9Q9Y3X0 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.67□□□□□ -1.98
CCDC9Q9Y3X0 AC015688.6-201ENST00000577737 104 ntBASIC2.67□□□□□ -1.98
CCDC9Q9Y3X0 AC002984.1-201ENST00000591692 448 ntBASIC2.67□□□□□ -1.98
CCDC9Q9Y3X0 MIR367-201ENST00000362299 68 ntBASIC2.66□□□□□ -1.98
CCDC9Q9Y3X0 Y_RNA.274-201ENST00000364714 101 ntBASIC2.66□□□□□ -1.98
CCDC9Q9Y3X0 RNU6-211P-201ENST00000384047 107 ntBASIC2.66□□□□□ -1.98
CCDC9Q9Y3X0 RNU6-886P-201ENST00000384319 105 ntBASIC2.66□□□□□ -1.98
CCDC9Q9Y3X0 SNORA19-201ENST00000384737 128 ntBASIC2.66□□□□□ -1.98
CCDC9Q9Y3X0 MIR4778-201ENST00000577635 80 ntBASIC2.66□□□□□ -1.98
CCDC9Q9Y3X0 MIR4762-201ENST00000585261 75 ntBASIC2.66□□□□□ -1.98
CCDC9Q9Y3X0 BX248123.2-201ENST00000606318 124 ntBASIC2.66□□□□□ -1.98
CCDC9Q9Y3X0 MIR8081-201ENST00000611533 95 ntBASIC2.66□□□□□ -1.98
CCDC9Q9Y3X0 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC2.66□□□□□ -1.98
CCDC9Q9Y3X0 RNU6-1084P-201ENST00000362498 107 ntBASIC2.65□□□□□ -1.99
CCDC9Q9Y3X0 SNORD33-201ENST00000362761 85 ntBASIC2.65□□□□□ -1.99
CCDC9Q9Y3X0 Y_RNA.200-201ENST00000364018 102 ntBASIC2.65□□□□□ -1.99
CCDC9Q9Y3X0 Y_RNA.277-201ENST00000364754 102 ntBASIC2.65□□□□□ -1.99
CCDC9Q9Y3X0 RNU6-746P-201ENST00000384112 109 ntBASIC2.65□□□□□ -1.99
CCDC9Q9Y3X0 MIR522-201ENST00000385071 87 ntBASIC2.65□□□□□ -1.99
CCDC9Q9Y3X0 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC9Q9Y3X0 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC9Q9Y3X0 SNRPGP19-201ENST00000603826 189 ntBASIC2.65□□□□□ -1.99
CCDC9Q9Y3X0 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
CCDC9Q9Y3X0 WWP1P1-201ENST00000466609 2769 ntBASIC2.64□□□□□ -1.99
CCDC9Q9Y3X0 ZNF355P-201ENST00000427301 3216 ntBASIC2.64□□□□□ -1.99
CCDC9Q9Y3X0 MIRLET7C-201ENST00000362160 84 ntBASIC2.64□□□□□ -1.99
CCDC9Q9Y3X0 MIR891A-201ENST00000401237 79 ntBASIC2.64□□□□□ -1.99
CCDC9Q9Y3X0 MIR4724-201ENST00000579485 89 ntBASIC2.64□□□□□ -1.99
CCDC9Q9Y3X0 MIR4448-201ENST00000584360 86 ntBASIC2.64□□□□□ -1.99
CCDC9Q9Y3X0 FAS-AS1.2-201ENST00000620386 170 ntBASIC2.64□□□□□ -1.99
CCDC9Q9Y3X0 AC027279.3-201ENST00000625055 122 ntBASIC2.64□□□□□ -1.99
CCDC9Q9Y3X0 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC9Q9Y3X0 Y_RNA.82-201ENST00000363000 102 ntBASIC2.63□□□□□ -1.99
CCDC9Q9Y3X0 Y_RNA.92-201ENST00000363043 102 ntBASIC2.63□□□□□ -1.99
CCDC9Q9Y3X0 RNU6-1209P-201ENST00000363655 107 ntBASIC2.63□□□□□ -1.99
CCDC9Q9Y3X0 Y_RNA.235-201ENST00000364412 102 ntBASIC2.63□□□□□ -1.99
CCDC9Q9Y3X0 Y_RNA.306-201ENST00000365015 102 ntBASIC2.63□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms