Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RNU6-475P-201ENST00000516073 104 ntBASIC0.83□□□□□ -2.28
FOXA2Q9Y261 RNU6-1007P-201ENST00000516586 107 ntBASIC0.83□□□□□ -2.28
FOXA2Q9Y261 AC023827.1-201ENST00000569247 97 ntBASIC0.83□□□□□ -2.28
FOXA2Q9Y261 AC007485.1-201ENST00000616755 206 ntBASIC0.83□□□□□ -2.28
FOXA2Q9Y261 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.83□□□□□ -2.28
FOXA2Q9Y261 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
FOXA2Q9Y261 Y_RNA.148-201ENST00000363557 117 ntBASIC0.82□□□□□ -2.28
FOXA2Q9Y261 Y_RNA.796-201ENST00000364268 102 ntBASIC0.82□□□□□ -2.28
FOXA2Q9Y261 Y_RNA.799-201ENST00000364992 102 ntBASIC0.82□□□□□ -2.28
FOXA2Q9Y261 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.82□□□□□ -2.28
FOXA2Q9Y261 RNU6-437P-201ENST00000459408 95 ntBASIC0.82□□□□□ -2.28
FOXA2Q9Y261 COX6CP14-201ENST00000469580 174 ntBASIC0.82□□□□□ -2.28
FOXA2Q9Y261 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.82□□□□□ -2.28
FOXA2Q9Y261 AL133255.1-201ENST00000606374 441 ntBASIC0.82□□□□□ -2.28
FOXA2Q9Y261 SNORD114-21-201ENST00000606412 72 ntBASIC0.82□□□□□ -2.28
FOXA2Q9Y261 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.82□□□□□ -2.28
FOXA2Q9Y261 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.82□□□□□ -2.28
FOXA2Q9Y261 RNU4-80P-201ENST00000363200 141 ntBASIC0.81□□□□□ -2.28
FOXA2Q9Y261 RNU6-1067P-201ENST00000384752 107 ntBASIC0.81□□□□□ -2.28
FOXA2Q9Y261 MIR1302-11-201ENST00000408051 138 ntBASIC0.81□□□□□ -2.28
FOXA2Q9Y261 MIR1302-9-201ENST00000408365 138 ntBASIC0.81□□□□□ -2.28
FOXA2Q9Y261 MIR1185-1-201ENST00000408598 86 ntBASIC0.81□□□□□ -2.28
FOXA2Q9Y261 MIR1302-10-201ENST00000408734 138 ntBASIC0.81□□□□□ -2.28
FOXA2Q9Y261 SNORA36B-201ENST00000410438 131 ntBASIC0.81□□□□□ -2.28
FOXA2Q9Y261 AC022028.1-201ENST00000412054 408 ntBASIC0.81□□□□□ -2.28
FOXA2Q9Y261 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.81□□□□□ -2.28
FOXA2Q9Y261 PSMC1P5-201ENST00000512850 177 ntBASIC0.81□□□□□ -2.28
FOXA2Q9Y261 RNU6-197P-201ENST00000516680 100 ntBASIC0.81□□□□□ -2.28
FOXA2Q9Y261 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
FOXA2Q9Y261 MIR1302-2-201ENST00000607096 138 ntBASIC0.81□□□□□ -2.28
FOXA2Q9Y261 AC008133.2-201ENST00000624540 351 ntBASIC0.81□□□□□ -2.28
FOXA2Q9Y261 MIR4251-201ENST00000635819 61 ntBASIC0.81□□□□□ -2.28
FOXA2Q9Y261 Y_RNA.112-201ENST00000363250 102 ntBASIC0.8□□□□□ -2.28
FOXA2Q9Y261 RNU6-1048P-201ENST00000364054 107 ntBASIC0.8□□□□□ -2.28
FOXA2Q9Y261 MIR608-201ENST00000384820 100 ntBASIC0.8□□□□□ -2.28
FOXA2Q9Y261 RNU7-141P-201ENST00000459304 62 ntBASIC0.8□□□□□ -2.28
FOXA2Q9Y261 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.8□□□□□ -2.28
FOXA2Q9Y261 AL117351.2-201ENST00000513571 157 ntBASIC0.8□□□□□ -2.28
FOXA2Q9Y261 RN7SKP164-201ENST00000516138 266 ntBASIC0.8□□□□□ -2.28
FOXA2Q9Y261 RNA5SP255-201ENST00000516370 107 ntBASIC0.8□□□□□ -2.28
FOXA2Q9Y261 AC136628.3-201ENST00000521868 290 ntBASIC0.8□□□□□ -2.28
FOXA2Q9Y261 AP003716.2-201ENST00000528260 108 ntBASIC0.8□□□□□ -2.28
FOXA2Q9Y261 RPL23AP91-201ENST00000569211 455 ntBASIC0.8□□□□□ -2.28
FOXA2Q9Y261 AC131055.1-201ENST00000584626 316 ntBASIC0.8□□□□□ -2.28
FOXA2Q9Y261 AC134026.1-201ENST00000623249 2239 ntBASIC0.8□□□□□ -2.28
FOXA2Q9Y261 RNU4-38P-201ENST00000364472 129 ntBASIC0.79□□□□□ -2.28
FOXA2Q9Y261 Y_RNA.242-201ENST00000364473 110 ntBASIC0.79□□□□□ -2.28
FOXA2Q9Y261 RNU6-1187P-201ENST00000364771 110 ntBASIC0.79□□□□□ -2.28
FOXA2Q9Y261 Y_RNA.286-201ENST00000364813 102 ntBASIC0.79□□□□□ -2.28
FOXA2Q9Y261 Y_RNA.431-201ENST00000384086 102 ntBASIC0.79□□□□□ -2.28
FOXA2Q9Y261 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.79□□□□□ -2.28
FOXA2Q9Y261 AC109810.1-201ENST00000534066 224 ntBASIC0.79□□□□□ -2.28
FOXA2Q9Y261 MIR548AR-201ENST00000582191 57 ntBASIC0.79□□□□□ -2.28
FOXA2Q9Y261 AC104695.3-201ENST00000604052 296 ntBASIC0.79□□□□□ -2.28
FOXA2Q9Y261 LARP7P1-201ENST00000605576 316 ntBASIC0.79□□□□□ -2.28
FOXA2Q9Y261 PART1_1.1-201ENST00000611761 217 ntBASIC0.79□□□□□ -2.28
FOXA2Q9Y261 Pinc.1-201ENST00000616452 154 ntBASIC0.79□□□□□ -2.28
FOXA2Q9Y261 uc_338.22-201ENST00000622722 187 ntBASIC0.79□□□□□ -2.28
FOXA2Q9Y261 SNORD113-8-201ENST00000363497 74 ntBASIC0.78□□□□□ -2.28
FOXA2Q9Y261 SNORA72.4-201ENST00000384174 132 ntBASIC0.78□□□□□ -2.28
FOXA2Q9Y261 MIR1278-201ENST00000408753 81 ntBASIC0.78□□□□□ -2.28
FOXA2Q9Y261 RNU6-130P-201ENST00000411112 103 ntBASIC0.78□□□□□ -2.28
FOXA2Q9Y261 AC005534.2-201ENST00000431047 433 ntBASIC0.78□□□□□ -2.28
FOXA2Q9Y261 AC067940.1-201ENST00000458411 300 ntBASIC0.78□□□□□ -2.28
FOXA2Q9Y261 RPL39P28-201ENST00000465655 155 ntBASIC0.78□□□□□ -2.28
FOXA2Q9Y261 AC010655.3-201ENST00000478818 450 ntBASIC0.78□□□□□ -2.28
FOXA2Q9Y261 NDUFA4P2-201ENST00000489989 244 ntBASIC0.78□□□□□ -2.28
FOXA2Q9Y261 RNU6-1046P-201ENST00000516538 107 ntBASIC0.78□□□□□ -2.28
FOXA2Q9Y261 RNU11-2P-201ENST00000516898 142 ntBASIC0.78□□□□□ -2.28
FOXA2Q9Y261 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.78□□□□□ -2.28
FOXA2Q9Y261 AC008507.4-201ENST00000585464 127 ntBASIC0.78□□□□□ -2.28
FOXA2Q9Y261 AC124312.5-201ENST00000604451 268 ntBASIC0.78□□□□□ -2.28
FOXA2Q9Y261 MIR376A1-201ENST00000616574 68 ntBASIC0.78□□□□□ -2.28
FOXA2Q9Y261 MIR369-201ENST00000362155 70 ntBASIC0.77□□□□□ -2.29
FOXA2Q9Y261 RNU6-674P-201ENST00000363831 107 ntBASIC0.77□□□□□ -2.29
FOXA2Q9Y261 Y_RNA.813-201ENST00000364639 102 ntBASIC0.77□□□□□ -2.29
FOXA2Q9Y261 SNORD28B-201ENST00000390993 75 ntBASIC0.77□□□□□ -2.29
FOXA2Q9Y261 RNU6-994P-201ENST00000410507 111 ntBASIC0.77□□□□□ -2.29
FOXA2Q9Y261 Y_RNA.602-201ENST00000410535 92 ntBASIC0.77□□□□□ -2.29
FOXA2Q9Y261 RNU2-14P-201ENST00000411053 191 ntBASIC0.77□□□□□ -2.29
FOXA2Q9Y261 MTATP6P23-201ENST00000440153 476 ntBASIC0.77□□□□□ -2.29
FOXA2Q9Y261 AC023449.1-201ENST00000454464 154 ntBASIC0.77□□□□□ -2.29
FOXA2Q9Y261 RNU6-397P-201ENST00000516226 104 ntBASIC0.77□□□□□ -2.29
FOXA2Q9Y261 AC005357.1-201ENST00000588399 301 ntBASIC0.77□□□□□ -2.29
FOXA2Q9Y261 AC090971.5-201ENST00000621102 293 ntBASIC0.77□□□□□ -2.29
FOXA2Q9Y261 AC090574.1-201ENST00000623186 233 ntBASIC0.77□□□□□ -2.29
FOXA2Q9Y261 RNU6-801P-201ENST00000364087 105 ntBASIC0.76□□□□□ -2.29
FOXA2Q9Y261 RNU6-268P-201ENST00000364174 107 ntBASIC0.76□□□□□ -2.29
FOXA2Q9Y261 SNORA63.7-201ENST00000365579 123 ntBASIC0.76□□□□□ -2.29
FOXA2Q9Y261 Y_RNA.370-201ENST00000365589 108 ntBASIC0.76□□□□□ -2.29
FOXA2Q9Y261 Y_RNA.445-201ENST00000384168 102 ntBASIC0.76□□□□□ -2.29
FOXA2Q9Y261 U8.17-201ENST00000391292 132 ntBASIC0.76□□□□□ -2.29
FOXA2Q9Y261 MTCO2P33-201ENST00000402100 465 ntBASIC0.76□□□□□ -2.29
FOXA2Q9Y261 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.76□□□□□ -2.29
FOXA2Q9Y261 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.76□□□□□ -2.29
FOXA2Q9Y261 AP001094.1-201ENST00000579805 193 ntBASIC0.76□□□□□ -2.29
FOXA2Q9Y261 AC015726.2-201ENST00000620112 122 ntBASIC0.76□□□□□ -2.29
FOXA2Q9Y261 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.75□□□□□ -2.29
FOXA2Q9Y261 Y_RNA.395-201ENST00000383945 109 ntBASIC0.75□□□□□ -2.29
FOXA2Q9Y261 SNORD89-201ENST00000390981 114 ntBASIC0.75□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 123.7 ms