Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 FTH1P12-201ENST00000432137 551 ntBASIC2.16□□□□□ -2.06
LIMCH1Q9UPQ0 RNA5SP57-201ENST00000459463 123 ntBASIC2.16□□□□□ -2.06
LIMCH1Q9UPQ0 RNU6-861P-201ENST00000516745 106 ntBASIC2.16□□□□□ -2.06
LIMCH1Q9UPQ0 RNA5SP437-201ENST00000517249 129 ntBASIC2.16□□□□□ -2.06
LIMCH1Q9UPQ0 AC022559.1-201ENST00000520905 205 ntBASIC2.16□□□□□ -2.06
LIMCH1Q9UPQ0 MIR4419B-201ENST00000577260 68 ntBASIC2.16□□□□□ -2.06
LIMCH1Q9UPQ0 MIR4744-201ENST00000581563 82 ntBASIC2.16□□□□□ -2.06
LIMCH1Q9UPQ0 AL096840.1-201ENST00000603287 93 ntBASIC2.16□□□□□ -2.06
LIMCH1Q9UPQ0 AL021707.8-201ENST00000609428 183 ntBASIC2.16□□□□□ -2.06
LIMCH1Q9UPQ0 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.16□□□□□ -2.06
LIMCH1Q9UPQ0 U6.106-201ENST00000636360 105 ntBASIC2.16□□□□□ -2.06
LIMCH1Q9UPQ0 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
LIMCH1Q9UPQ0 MIR126-201ENST00000362291 85 ntBASIC2.15□□□□□ -2.07
LIMCH1Q9UPQ0 RNU6-682P-201ENST00000363843 106 ntBASIC2.15□□□□□ -2.07
LIMCH1Q9UPQ0 Y_RNA.464-201ENST00000384282 110 ntBASIC2.15□□□□□ -2.07
LIMCH1Q9UPQ0 PCNPP3-201ENST00000393579 471 ntBASIC2.15□□□□□ -2.07
LIMCH1Q9UPQ0 AL603908.1-201ENST00000406098 201 ntBASIC2.15□□□□□ -2.07
LIMCH1Q9UPQ0 MIR1278-201ENST00000408753 81 ntBASIC2.15□□□□□ -2.07
LIMCH1Q9UPQ0 RPL30P13-201ENST00000418873 348 ntBASIC2.15□□□□□ -2.07
LIMCH1Q9UPQ0 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.15□□□□□ -2.07
LIMCH1Q9UPQ0 SNRPGP10-201ENST00000432323 225 ntBASIC2.15□□□□□ -2.07
LIMCH1Q9UPQ0 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.15□□□□□ -2.07
LIMCH1Q9UPQ0 snoU13.27-201ENST00000459278 104 ntBASIC2.15□□□□□ -2.07
LIMCH1Q9UPQ0 RNU6-126P-201ENST00000516685 103 ntBASIC2.15□□□□□ -2.07
LIMCH1Q9UPQ0 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.15□□□□□ -2.07
LIMCH1Q9UPQ0 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.15□□□□□ -2.07
LIMCH1Q9UPQ0 MIR4762-201ENST00000585261 75 ntBASIC2.15□□□□□ -2.07
LIMCH1Q9UPQ0 AL773524.1-201ENST00000614065 229 ntBASIC2.15□□□□□ -2.07
LIMCH1Q9UPQ0 AL591926.4-201ENST00000616895 298 ntBASIC2.15□□□□□ -2.07
LIMCH1Q9UPQ0 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
LIMCH1Q9UPQ0 RNA5SP276-201ENST00000362580 94 ntBASIC2.14□□□□□ -2.07
LIMCH1Q9UPQ0 U8.5-201ENST00000364528 136 ntBASIC2.14□□□□□ -2.07
LIMCH1Q9UPQ0 Y_RNA.572-201ENST00000384757 98 ntBASIC2.14□□□□□ -2.07
LIMCH1Q9UPQ0 RNU2-55P-201ENST00000411146 174 ntBASIC2.14□□□□□ -2.07
LIMCH1Q9UPQ0 RN7SKP192-201ENST00000411291 327 ntBASIC2.14□□□□□ -2.07
LIMCH1Q9UPQ0 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.14□□□□□ -2.07
LIMCH1Q9UPQ0 HSPE1P9-201ENST00000440046 311 ntBASIC2.14□□□□□ -2.07
LIMCH1Q9UPQ0 STAG3L5P-204ENST00000443759 179 ntBASIC2.14□□□□□ -2.07
LIMCH1Q9UPQ0 SNORD11-201ENST00000459124 84 ntBASIC2.14□□□□□ -2.07
LIMCH1Q9UPQ0 Y_RNA.797-201ENST00000515977 94 ntBASIC2.14□□□□□ -2.07
LIMCH1Q9UPQ0 Y_RNA.662-201ENST00000516028 97 ntBASIC2.14□□□□□ -2.07
LIMCH1Q9UPQ0 SNORA31.10-201ENST00000516482 106 ntBASIC2.14□□□□□ -2.07
LIMCH1Q9UPQ0 MIR4709-201ENST00000577272 72 ntBASIC2.14□□□□□ -2.07
LIMCH1Q9UPQ0 RNU2-4P-201ENST00000606190 192 ntBASIC2.14□□□□□ -2.07
LIMCH1Q9UPQ0 AL365434.2-201ENST00000607979 234 ntBASIC2.14□□□□□ -2.07
LIMCH1Q9UPQ0 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.14□□□□□ -2.07
LIMCH1Q9UPQ0 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
LIMCH1Q9UPQ0 Y_RNA.240-201ENST00000364469 95 ntBASIC2.13□□□□□ -2.07
LIMCH1Q9UPQ0 RNU6-131P-201ENST00000391144 107 ntBASIC2.13□□□□□ -2.07
LIMCH1Q9UPQ0 AC245047.8-201ENST00000456455 284 ntBASIC2.13□□□□□ -2.07
LIMCH1Q9UPQ0 SNORA31.17-201ENST00000516953 127 ntBASIC2.13□□□□□ -2.07
LIMCH1Q9UPQ0 MIR4287-201ENST00000579398 78 ntBASIC2.13□□□□□ -2.07
LIMCH1Q9UPQ0 MIR4648-201ENST00000580107 72 ntBASIC2.13□□□□□ -2.07
LIMCH1Q9UPQ0 uc_338.4-201ENST00000616635 176 ntBASIC2.13□□□□□ -2.07
LIMCH1Q9UPQ0 MIR7843-201ENST00000622274 79 ntBASIC2.13□□□□□ -2.07
LIMCH1Q9UPQ0 Y_RNA.75-201ENST00000362927 97 ntBASIC2.12□□□□□ -2.07
LIMCH1Q9UPQ0 SNORD68-201ENST00000363214 84 ntBASIC2.12□□□□□ -2.07
LIMCH1Q9UPQ0 Y_RNA.182-201ENST00000363880 111 ntBASIC2.12□□□□□ -2.07
LIMCH1Q9UPQ0 RNU6-312P-201ENST00000364629 107 ntBASIC2.12□□□□□ -2.07
LIMCH1Q9UPQ0 SNORD48-201ENST00000364953 64 ntBASIC2.12□□□□□ -2.07
LIMCH1Q9UPQ0 RNU6-1031P-201ENST00000384773 107 ntBASIC2.12□□□□□ -2.07
LIMCH1Q9UPQ0 MIR522-201ENST00000385071 87 ntBASIC2.12□□□□□ -2.07
LIMCH1Q9UPQ0 RNU6-578P-201ENST00000390980 103 ntBASIC2.12□□□□□ -2.07
LIMCH1Q9UPQ0 AL606845.1-201ENST00000404881 255 ntBASIC2.12□□□□□ -2.07
LIMCH1Q9UPQ0 AC244636.1-201ENST00000421152 228 ntBASIC2.12□□□□□ -2.07
LIMCH1Q9UPQ0 AC003989.2-201ENST00000440224 169 ntBASIC2.12□□□□□ -2.07
LIMCH1Q9UPQ0 RPL23AP6-201ENST00000446637 472 ntBASIC2.12□□□□□ -2.07
LIMCH1Q9UPQ0 OR9P1P-201ENST00000496431 281 ntBASIC2.12□□□□□ -2.07
LIMCH1Q9UPQ0 SCARNA8-201ENST00000515924 131 ntBASIC2.12□□□□□ -2.07
LIMCH1Q9UPQ0 MRPS18CP4-201ENST00000535821 231 ntBASIC2.12□□□□□ -2.07
LIMCH1Q9UPQ0 MIR4662B-201ENST00000579498 81 ntBASIC2.12□□□□□ -2.07
LIMCH1Q9UPQ0 MIR4524B-201ENST00000581569 115 ntBASIC2.12□□□□□ -2.07
LIMCH1Q9UPQ0 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.12□□□□□ -2.07
LIMCH1Q9UPQ0 SNORA4.2-201ENST00000365313 147 ntBASIC2.11□□□□□ -2.07
LIMCH1Q9UPQ0 RNU6-728P-201ENST00000365375 104 ntBASIC2.11□□□□□ -2.07
LIMCH1Q9UPQ0 MIR504-201ENST00000385065 83 ntBASIC2.11□□□□□ -2.07
LIMCH1Q9UPQ0 Y_RNA.587-201ENST00000391210 103 ntBASIC2.11□□□□□ -2.07
LIMCH1Q9UPQ0 AC019129.1-201ENST00000403786 261 ntBASIC2.11□□□□□ -2.07
LIMCH1Q9UPQ0 MLLT10P1-201ENST00000418346 262 ntBASIC2.11□□□□□ -2.07
LIMCH1Q9UPQ0 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.11□□□□□ -2.07
LIMCH1Q9UPQ0 SUMO1P3-201ENST00000439961 304 ntBASIC2.11□□□□□ -2.07
LIMCH1Q9UPQ0 RNU7-34P-201ENST00000459394 64 ntBASIC2.11□□□□□ -2.07
LIMCH1Q9UPQ0 RPS29P11-201ENST00000496507 171 ntBASIC2.11□□□□□ -2.07
LIMCH1Q9UPQ0 RNU6-453P-201ENST00000516819 85 ntBASIC2.11□□□□□ -2.07
LIMCH1Q9UPQ0 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.11□□□□□ -2.07
LIMCH1Q9UPQ0 MIR4769-201ENST00000584126 77 ntBASIC2.11□□□□□ -2.07
LIMCH1Q9UPQ0 AL627230.6-201ENST00000611129 280 ntBASIC2.11□□□□□ -2.07
LIMCH1Q9UPQ0 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
LIMCH1Q9UPQ0 RNU6-1138P-201ENST00000365359 106 ntBASIC2.1□□□□□ -2.07
LIMCH1Q9UPQ0 RN7SKP51-201ENST00000410781 304 ntBASIC2.1□□□□□ -2.07
LIMCH1Q9UPQ0 AL445685.2-201ENST00000422551 342 ntBASIC2.1□□□□□ -2.07
LIMCH1Q9UPQ0 RNU6-1212P-201ENST00000517023 104 ntBASIC2.1□□□□□ -2.07
LIMCH1Q9UPQ0 AC024614.2-201ENST00000577584 372 ntBASIC2.1□□□□□ -2.07
LIMCH1Q9UPQ0 AL049861.1-201ENST00000603130 150 ntBASIC2.1□□□□□ -2.07
LIMCH1Q9UPQ0 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
LIMCH1Q9UPQ0 Y_RNA.23-201ENST00000362496 106 ntBASIC2.09□□□□□ -2.07
LIMCH1Q9UPQ0 RNU6-1084P-201ENST00000362498 107 ntBASIC2.09□□□□□ -2.07
LIMCH1Q9UPQ0 RNU6-275P-201ENST00000364910 107 ntBASIC2.09□□□□□ -2.07
LIMCH1Q9UPQ0 MIR9-3-201ENST00000385084 90 ntBASIC2.09□□□□□ -2.07
LIMCH1Q9UPQ0 MT-TT-201ENST00000387460 66 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms