Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 RNU6-988P-201ENST00000519081 107 ntBASIC1.96□□□□□ -2.1
SHROOM4Q9ULL8 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.96□□□□□ -2.1
SHROOM4Q9ULL8 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
SHROOM4Q9ULL8 AC104332.1-201ENST00000440471 797 ntBASIC1.95□□□□□ -2.1
SHROOM4Q9ULL8 SNORA31.4-201ENST00000516049 129 ntBASIC1.95□□□□□ -2.1
SHROOM4Q9ULL8 SNORA70.22-201ENST00000517160 124 ntBASIC1.95□□□□□ -2.1
SHROOM4Q9ULL8 RNU6-165P-201ENST00000517170 99 ntBASIC1.95□□□□□ -2.1
SHROOM4Q9ULL8 Y_RNA.721-201ENST00000517207 102 ntBASIC1.95□□□□□ -2.1
SHROOM4Q9ULL8 AL160413.1-201ENST00000622780 310 ntBASIC1.95□□□□□ -2.1
SHROOM4Q9ULL8 AL589743.1-201ENST00000551932 2712 ntBASIC1.95□□□□□ -2.1
SHROOM4Q9ULL8 Y_RNA.509-201ENST00000384506 99 ntBASIC1.94□□□□□ -2.1
SHROOM4Q9ULL8 RNU4-30P-201ENST00000410245 143 ntBASIC1.94□□□□□ -2.1
SHROOM4Q9ULL8 RNU6-101P-201ENST00000410323 104 ntBASIC1.94□□□□□ -2.1
SHROOM4Q9ULL8 POLR2KP2-201ENST00000438155 177 ntBASIC1.94□□□□□ -2.1
SHROOM4Q9ULL8 MIR3973-201ENST00000579824 107 ntBASIC1.94□□□□□ -2.1
SHROOM4Q9ULL8 MIR4714-201ENST00000580728 77 ntBASIC1.94□□□□□ -2.1
SHROOM4Q9ULL8 Y_RNA.28-201ENST00000362554 111 ntBASIC1.94□□□□□ -2.1
SHROOM4Q9ULL8 Y_RNA.383-201ENST00000383855 97 ntBASIC1.94□□□□□ -2.1
SHROOM4Q9ULL8 MIR452-201ENST00000385020 85 ntBASIC1.94□□□□□ -2.1
SHROOM4Q9ULL8 RNU6-131P-201ENST00000391144 107 ntBASIC1.94□□□□□ -2.1
SHROOM4Q9ULL8 U8.5-201ENST00000364528 136 ntBASIC1.93□□□□□ -2.1
SHROOM4Q9ULL8 snoU2-30.1-201ENST00000365012 70 ntBASIC1.93□□□□□ -2.1
SHROOM4Q9ULL8 SNORA25-201ENST00000384384 134 ntBASIC1.93□□□□□ -2.1
SHROOM4Q9ULL8 MIR193B-201ENST00000384907 83 ntBASIC1.93□□□□□ -2.1
SHROOM4Q9ULL8 MIR522-201ENST00000385071 87 ntBASIC1.93□□□□□ -2.1
SHROOM4Q9ULL8 AC015922.2-201ENST00000435593 184 ntBASIC1.93□□□□□ -2.1
SHROOM4Q9ULL8 RNU6-1132P-201ENST00000459214 107 ntBASIC1.93□□□□□ -2.1
SHROOM4Q9ULL8 Y_RNA.631-201ENST00000459607 101 ntBASIC1.93□□□□□ -2.1
SHROOM4Q9ULL8 RPS23P4-201ENST00000487908 423 ntBASIC1.93□□□□□ -2.1
SHROOM4Q9ULL8 DEFB117-201ENST00000602356 141 ntBASIC1.93□□□□□ -2.1
SHROOM4Q9ULL8 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.93□□□□□ -2.1
SHROOM4Q9ULL8 Y_RNA.253-201ENST00000364562 112 ntBASIC1.92□□□□□ -2.1
SHROOM4Q9ULL8 MIR1298-201ENST00000408783 112 ntBASIC1.92□□□□□ -2.1
SHROOM4Q9ULL8 AP003357.1-201ENST00000604497 148 ntBASIC1.92□□□□□ -2.1
SHROOM4Q9ULL8 Y_RNA.31-201ENST00000362574 102 ntBASIC1.91□□□□□ -2.1
SHROOM4Q9ULL8 SNRPGP10-201ENST00000432323 225 ntBASIC1.91□□□□□ -2.1
SHROOM4Q9ULL8 SNORD45.4-201ENST00000516629 73 ntBASIC1.91□□□□□ -2.1
SHROOM4Q9ULL8 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
SHROOM4Q9ULL8 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
SHROOM4Q9ULL8 Y_RNA.61-201ENST00000362835 102 ntBASIC1.9□□□□□ -2.11
SHROOM4Q9ULL8 Y_RNA.389-201ENST00000383924 113 ntBASIC1.9□□□□□ -2.11
SHROOM4Q9ULL8 MIR136-201ENST00000385207 82 ntBASIC1.9□□□□□ -2.11
SHROOM4Q9ULL8 RNU6-308P-201ENST00000390957 107 ntBASIC1.9□□□□□ -2.11
SHROOM4Q9ULL8 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.9□□□□□ -2.11
SHROOM4Q9ULL8 Y_RNA.183-201ENST00000363882 113 ntBASIC1.89□□□□□ -2.11
SHROOM4Q9ULL8 PMCHL1-202ENST00000423102 261 ntBASIC1.89□□□□□ -2.11
SHROOM4Q9ULL8 AC117454.1-201ENST00000491120 168 ntBASIC1.89□□□□□ -2.11
SHROOM4Q9ULL8 RPL23AP54-201ENST00000495129 419 ntBASIC1.89□□□□□ -2.11
SHROOM4Q9ULL8 RNU7-115P-201ENST00000516433 55 ntBASIC1.89□□□□□ -2.11
SHROOM4Q9ULL8 AC136628.3-201ENST00000521868 290 ntBASIC1.89□□□□□ -2.11
SHROOM4Q9ULL8 MIR2681-201ENST00000581814 105 ntBASIC1.89□□□□□ -2.11
SHROOM4Q9ULL8 AC134503.1-201ENST00000633048 54 ntBASIC1.89□□□□□ -2.11
SHROOM4Q9ULL8 U8.7-201ENST00000364940 136 ntBASIC1.88□□□□□ -2.11
SHROOM4Q9ULL8 RNU6-474P-201ENST00000384243 107 ntBASIC1.88□□□□□ -2.11
SHROOM4Q9ULL8 RNU6-823P-201ENST00000391042 103 ntBASIC1.88□□□□□ -2.11
SHROOM4Q9ULL8 AC004941.2-201ENST00000427009 228 ntBASIC1.88□□□□□ -2.11
SHROOM4Q9ULL8 RNU7-40P-201ENST00000516397 64 ntBASIC1.88□□□□□ -2.11
SHROOM4Q9ULL8 Y_RNA.715-201ENST00000517082 110 ntBASIC1.88□□□□□ -2.11
SHROOM4Q9ULL8 MIR1273G-201ENST00000577677 100 ntBASIC1.88□□□□□ -2.11
SHROOM4Q9ULL8 AL590095.2-201ENST00000604136 117 ntBASIC1.88□□□□□ -2.11
SHROOM4Q9ULL8 BX284668.6-201ENST00000606899 438 ntBASIC1.88□□□□□ -2.11
SHROOM4Q9ULL8 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.88□□□□□ -2.11
SHROOM4Q9ULL8 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
SHROOM4Q9ULL8 SNORA70.7-201ENST00000384159 133 ntBASIC1.88□□□□□ -2.11
SHROOM4Q9ULL8 SNORD41-201ENST00000386967 70 ntBASIC1.88□□□□□ -2.11
SHROOM4Q9ULL8 RNU6-130P-201ENST00000411112 103 ntBASIC1.88□□□□□ -2.11
SHROOM4Q9ULL8 AC048334.1-201ENST00000477975 159 ntBASIC1.88□□□□□ -2.11
SHROOM4Q9ULL8 SNORA31.2-201ENST00000516019 134 ntBASIC1.88□□□□□ -2.11
SHROOM4Q9ULL8 RNU6-1007P-201ENST00000516586 107 ntBASIC1.88□□□□□ -2.11
SHROOM4Q9ULL8 AC024405.2-202ENST00000532731 184 ntBASIC1.88□□□□□ -2.11
SHROOM4Q9ULL8 MIR4698-201ENST00000577795 80 ntBASIC1.88□□□□□ -2.11
SHROOM4Q9ULL8 PART1_1.1-201ENST00000611761 217 ntBASIC1.88□□□□□ -2.11
SHROOM4Q9ULL8 JPX_2.1-201ENST00000614161 69 ntBASIC1.88□□□□□ -2.11
SHROOM4Q9ULL8 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.87□□□□□ -2.11
SHROOM4Q9ULL8 Y_RNA.645-201ENST00000391229 102 ntBASIC1.87□□□□□ -2.11
SHROOM4Q9ULL8 MIR1252-201ENST00000408861 65 ntBASIC1.87□□□□□ -2.11
SHROOM4Q9ULL8 AC245047.7-201ENST00000440265 293 ntBASIC1.87□□□□□ -2.11
SHROOM4Q9ULL8 AL133373.1-201ENST00000497098 94 ntBASIC1.87□□□□□ -2.11
SHROOM4Q9ULL8 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.87□□□□□ -2.11
SHROOM4Q9ULL8 RNA5SP404-201ENST00000517118 132 ntBASIC1.87□□□□□ -2.11
SHROOM4Q9ULL8 AL022345.2-201ENST00000606307 135 ntBASIC1.87□□□□□ -2.11
SHROOM4Q9ULL8 SNORD113-8-201ENST00000363497 74 ntBASIC1.86□□□□□ -2.11
SHROOM4Q9ULL8 MIR526A1-201ENST00000384897 85 ntBASIC1.86□□□□□ -2.11
SHROOM4Q9ULL8 RNU6-1046P-201ENST00000516538 107 ntBASIC1.86□□□□□ -2.11
SHROOM4Q9ULL8 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.86□□□□□ -2.11
SHROOM4Q9ULL8 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.86□□□□□ -2.11
SHROOM4Q9ULL8 MIR3145-201ENST00000580727 82 ntBASIC1.86□□□□□ -2.11
SHROOM4Q9ULL8 MIR376A1-201ENST00000616574 68 ntBASIC1.86□□□□□ -2.11
SHROOM4Q9ULL8 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
SHROOM4Q9ULL8 RNA5SP257-201ENST00000363023 116 ntBASIC1.85□□□□□ -2.11
SHROOM4Q9ULL8 Y_RNA.203-201ENST00000364106 102 ntBASIC1.85□□□□□ -2.11
SHROOM4Q9ULL8 SNORD50B-201ENST00000364995 70 ntBASIC1.85□□□□□ -2.11
SHROOM4Q9ULL8 Y_RNA.336-201ENST00000365307 109 ntBASIC1.85□□□□□ -2.11
SHROOM4Q9ULL8 Y_RNA.380-201ENST00000365663 111 ntBASIC1.85□□□□□ -2.11
SHROOM4Q9ULL8 AC117470.1-201ENST00000381974 330 ntBASIC1.85□□□□□ -2.11
SHROOM4Q9ULL8 RNU6-910P-201ENST00000390844 107 ntBASIC1.85□□□□□ -2.11
SHROOM4Q9ULL8 HMGN2P32-201ENST00000444648 269 ntBASIC1.85□□□□□ -2.11
SHROOM4Q9ULL8 RNA5SP395-201ENST00000516567 118 ntBASIC1.85□□□□□ -2.11
SHROOM4Q9ULL8 AL512605.2-201ENST00000592972 256 ntBASIC1.85□□□□□ -2.11
SHROOM4Q9ULL8 AC104695.3-201ENST00000604052 296 ntBASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 9.3 ms