Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.53□□□□□ -2.16
LIMA1Q9UHB6 AC106754.2-201ENST00000623006 233 ntBASIC1.53□□□□□ -2.16
LIMA1Q9UHB6 Y_RNA.20-201ENST00000362479 113 ntBASIC1.52□□□□□ -2.17
LIMA1Q9UHB6 SNORD68-201ENST00000363214 84 ntBASIC1.52□□□□□ -2.17
LIMA1Q9UHB6 RNU6-1323P-201ENST00000384025 107 ntBASIC1.52□□□□□ -2.17
LIMA1Q9UHB6 RNU6-1289P-201ENST00000384431 106 ntBASIC1.52□□□□□ -2.17
LIMA1Q9UHB6 MIR548H3-201ENST00000408771 118 ntBASIC1.52□□□□□ -2.17
LIMA1Q9UHB6 RNU7-141P-201ENST00000459304 62 ntBASIC1.52□□□□□ -2.17
LIMA1Q9UHB6 RNU7-12P-201ENST00000516030 62 ntBASIC1.52□□□□□ -2.17
LIMA1Q9UHB6 AC068338.1-201ENST00000565567 176 ntBASIC1.52□□□□□ -2.17
LIMA1Q9UHB6 MIR4282-201ENST00000583613 67 ntBASIC1.52□□□□□ -2.17
LIMA1Q9UHB6 AL512605.2-201ENST00000592972 256 ntBASIC1.52□□□□□ -2.17
LIMA1Q9UHB6 AL645939.4-201ENST00000604495 135 ntBASIC1.52□□□□□ -2.17
LIMA1Q9UHB6 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.52□□□□□ -2.17
LIMA1Q9UHB6 AL078604.3-201ENST00000615580 211 ntBASIC1.52□□□□□ -2.17
LIMA1Q9UHB6 snoU18.1-201ENST00000629629 71 ntBASIC1.52□□□□□ -2.17
LIMA1Q9UHB6 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
LIMA1Q9UHB6 AC134026.1-201ENST00000623249 2239 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 RNU6-199P-201ENST00000362954 107 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 Y_RNA.82-201ENST00000363000 102 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 Y_RNA.92-201ENST00000363043 102 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 RNU6-379P-201ENST00000363813 104 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 SNORD27-201ENST00000363981 72 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 Y_RNA.235-201ENST00000364412 102 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 U8.7-201ENST00000364940 136 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 Y_RNA.306-201ENST00000365015 102 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 Y_RNA.312-201ENST00000365089 102 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 Y_RNA.322-201ENST00000365151 102 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 MIR758-201ENST00000390227 88 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 BTF3P11-201ENST00000426582 477 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 AL591806.2-201ENST00000433122 173 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 SNRPGP13-201ENST00000442212 177 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 RPS29P29-201ENST00000456396 171 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 RNU1-98P-201ENST00000458992 160 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 Y_RNA.650-201ENST00000459002 102 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 SNORD13-201ENST00000459299 104 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 RNU7-116P-201ENST00000516940 62 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 Y_RNA.777-201ENST00000516982 102 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 Y_RNA.771-201ENST00000598668 102 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 MIR7843-201ENST00000622274 79 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 Y_RNA.789-201ENST00000622480 102 ntBASIC1.51□□□□□ -2.17
LIMA1Q9UHB6 Y_RNA.54-201ENST00000362766 105 ntBASIC1.5□□□□□ -2.17
LIMA1Q9UHB6 Y_RNA.122-201ENST00000363331 96 ntBASIC1.5□□□□□ -2.17
LIMA1Q9UHB6 Y_RNA.188-201ENST00000363952 111 ntBASIC1.5□□□□□ -2.17
LIMA1Q9UHB6 Y_RNA.253-201ENST00000364562 112 ntBASIC1.5□□□□□ -2.17
LIMA1Q9UHB6 RNU6-1248P-201ENST00000391096 64 ntBASIC1.5□□□□□ -2.17
LIMA1Q9UHB6 Y_RNA.618-201ENST00000410949 107 ntBASIC1.5□□□□□ -2.17
LIMA1Q9UHB6 AC093850.1-201ENST00000454121 251 ntBASIC1.5□□□□□ -2.17
LIMA1Q9UHB6 AC117454.1-201ENST00000491120 168 ntBASIC1.5□□□□□ -2.17
LIMA1Q9UHB6 CYCTP-201ENST00000504253 315 ntBASIC1.5□□□□□ -2.17
LIMA1Q9UHB6 SNORD116-28-201ENST00000516123 91 ntBASIC1.5□□□□□ -2.17
LIMA1Q9UHB6 RNU7-115P-201ENST00000516433 55 ntBASIC1.5□□□□□ -2.17
LIMA1Q9UHB6 RNU6-1271P-201ENST00000517049 105 ntBASIC1.5□□□□□ -2.17
LIMA1Q9UHB6 RNU6-111P-201ENST00000517179 105 ntBASIC1.5□□□□□ -2.17
LIMA1Q9UHB6 RNU6-1116P-201ENST00000517269 99 ntBASIC1.5□□□□□ -2.17
LIMA1Q9UHB6 AC024405.2-202ENST00000532731 184 ntBASIC1.5□□□□□ -2.17
LIMA1Q9UHB6 POLR3GP1-201ENST00000594073 261 ntBASIC1.5□□□□□ -2.17
LIMA1Q9UHB6 AC006006.1-201ENST00000603082 144 ntBASIC1.5□□□□□ -2.17
LIMA1Q9UHB6 AC120024.3-201ENST00000603167 156 ntBASIC1.5□□□□□ -2.17
LIMA1Q9UHB6 AP003357.1-201ENST00000604497 148 ntBASIC1.5□□□□□ -2.17
LIMA1Q9UHB6 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
LIMA1Q9UHB6 RNU6-457P-201ENST00000363999 107 ntBASIC1.49□□□□□ -2.17
LIMA1Q9UHB6 U8.5-201ENST00000364528 136 ntBASIC1.49□□□□□ -2.17
LIMA1Q9UHB6 Y_RNA.269-201ENST00000364685 89 ntBASIC1.49□□□□□ -2.17
LIMA1Q9UHB6 RNU6-211P-201ENST00000384047 107 ntBASIC1.49□□□□□ -2.17
LIMA1Q9UHB6 RPS29P23-201ENST00000458635 123 ntBASIC1.49□□□□□ -2.17
LIMA1Q9UHB6 AL512310.8-201ENST00000550183 120 ntBASIC1.49□□□□□ -2.17
LIMA1Q9UHB6 AC127455.1-201ENST00000565496 145 ntBASIC1.49□□□□□ -2.17
LIMA1Q9UHB6 AC005357.1-201ENST00000588399 301 ntBASIC1.49□□□□□ -2.17
LIMA1Q9UHB6 AC013791.1-201ENST00000616619 62 ntBASIC1.49□□□□□ -2.17
LIMA1Q9UHB6 MIR548AY-201ENST00000617669 107 ntBASIC1.49□□□□□ -2.17
LIMA1Q9UHB6 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.49□□□□□ -2.17
LIMA1Q9UHB6 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
LIMA1Q9UHB6 Y_RNA.478-201ENST00000384358 107 ntBASIC1.48□□□□□ -2.17
LIMA1Q9UHB6 RNU6-163P-201ENST00000384396 106 ntBASIC1.48□□□□□ -2.17
LIMA1Q9UHB6 MTCO2P33-201ENST00000402100 465 ntBASIC1.48□□□□□ -2.17
LIMA1Q9UHB6 RPL30P7-201ENST00000479312 323 ntBASIC1.48□□□□□ -2.17
LIMA1Q9UHB6 MIR4762-201ENST00000585261 75 ntBASIC1.48□□□□□ -2.17
LIMA1Q9UHB6 AC104984.5-201ENST00000586878 94 ntBASIC1.48□□□□□ -2.17
LIMA1Q9UHB6 MIR6715A-201ENST00000615929 79 ntBASIC1.48□□□□□ -2.17
LIMA1Q9UHB6 RNU6-833P-201ENST00000363486 107 ntBASIC1.47□□□□□ -2.17
LIMA1Q9UHB6 MIR891A-201ENST00000401237 79 ntBASIC1.47□□□□□ -2.17
LIMA1Q9UHB6 RNU6-955P-201ENST00000410497 104 ntBASIC1.47□□□□□ -2.17
LIMA1Q9UHB6 PIGPP3-201ENST00000425307 415 ntBASIC1.47□□□□□ -2.17
LIMA1Q9UHB6 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.47□□□□□ -2.17
LIMA1Q9UHB6 HMGN1P7-201ENST00000491722 313 ntBASIC1.47□□□□□ -2.17
LIMA1Q9UHB6 RPL23AP54-201ENST00000495129 419 ntBASIC1.47□□□□□ -2.17
LIMA1Q9UHB6 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.47□□□□□ -2.17
LIMA1Q9UHB6 AC108210.2-201ENST00000503681 201 ntBASIC1.47□□□□□ -2.17
LIMA1Q9UHB6 RNU6-922P-201ENST00000516753 99 ntBASIC1.47□□□□□ -2.17
LIMA1Q9UHB6 RNU6-388P-201ENST00000517012 105 ntBASIC1.47□□□□□ -2.17
LIMA1Q9UHB6 RNU6-389P-201ENST00000517048 105 ntBASIC1.47□□□□□ -2.17
LIMA1Q9UHB6 MIR5692C2-201ENST00000577959 77 ntBASIC1.47□□□□□ -2.17
LIMA1Q9UHB6 BX284668.6-201ENST00000606899 438 ntBASIC1.47□□□□□ -2.17
LIMA1Q9UHB6 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.47□□□□□ -2.17
LIMA1Q9UHB6 AC078938.1-201ENST00000620993 318 ntBASIC1.47□□□□□ -2.17
LIMA1Q9UHB6 AC027279.3-201ENST00000625055 122 ntBASIC1.47□□□□□ -2.17
LIMA1Q9UHB6 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.47□□□□□ -2.17
LIMA1Q9UHB6 Y_RNA.65-201ENST00000362846 100 ntBASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 159.9 ms