Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 Y_RNA.395-201ENST00000383945 109 ntBASIC0.91□□□□□ -2.26
LHX3Q9UBR4 RNU6-42P-201ENST00000384165 107 ntBASIC0.91□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.445-201ENST00000384168 102 ntBASIC0.91□□□□□ -2.26
LHX3Q9UBR4 SNORA22C-201ENST00000384614 134 ntBASIC0.91□□□□□ -2.26
LHX3Q9UBR4 POLR2KP2-201ENST00000438155 177 ntBASIC0.91□□□□□ -2.26
LHX3Q9UBR4 AC245047.8-201ENST00000456455 284 ntBASIC0.91□□□□□ -2.26
LHX3Q9UBR4 snoU13.25-201ENST00000458945 104 ntBASIC0.91□□□□□ -2.26
LHX3Q9UBR4 SNORA18.7-201ENST00000516910 131 ntBASIC0.91□□□□□ -2.26
LHX3Q9UBR4 RNU7-116P-201ENST00000516940 62 ntBASIC0.91□□□□□ -2.26
LHX3Q9UBR4 AC090142.3-201ENST00000519012 385 ntBASIC0.91□□□□□ -2.26
LHX3Q9UBR4 AC136932.1-201ENST00000574771 208 ntBASIC0.91□□□□□ -2.26
LHX3Q9UBR4 PRELID3BP2-201ENST00000605362 201 ntBASIC0.91□□□□□ -2.26
LHX3Q9UBR4 AL391903.3-201ENST00000612158 163 ntBASIC0.91□□□□□ -2.26
LHX3Q9UBR4 AC090971.5-201ENST00000621102 293 ntBASIC0.91□□□□□ -2.26
LHX3Q9UBR4 RNU4-80P-201ENST00000363200 141 ntBASIC0.9□□□□□ -2.27
LHX3Q9UBR4 RNU6-1048P-201ENST00000364054 107 ntBASIC0.9□□□□□ -2.27
LHX3Q9UBR4 SNORD114-24-201ENST00000365029 72 ntBASIC0.9□□□□□ -2.27
LHX3Q9UBR4 Y_RNA.431-201ENST00000384086 102 ntBASIC0.9□□□□□ -2.27
LHX3Q9UBR4 Y_RNA.509-201ENST00000384506 99 ntBASIC0.9□□□□□ -2.27
LHX3Q9UBR4 MRPL35P3-201ENST00000421557 364 ntBASIC0.9□□□□□ -2.27
LHX3Q9UBR4 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.9□□□□□ -2.27
LHX3Q9UBR4 HMGN1P10-201ENST00000474557 553 ntBASIC0.9□□□□□ -2.27
LHX3Q9UBR4 RPS26P48-201ENST00000491713 339 ntBASIC0.9□□□□□ -2.27
LHX3Q9UBR4 RNU6-475P-201ENST00000516073 104 ntBASIC0.9□□□□□ -2.27
LHX3Q9UBR4 RNU7-115P-201ENST00000516433 55 ntBASIC0.9□□□□□ -2.27
LHX3Q9UBR4 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.9□□□□□ -2.27
LHX3Q9UBR4 MIR4661-201ENST00000582720 75 ntBASIC0.9□□□□□ -2.27
LHX3Q9UBR4 AC124312.5-201ENST00000604451 268 ntBASIC0.9□□□□□ -2.27
LHX3Q9UBR4 AP003357.1-201ENST00000604497 148 ntBASIC0.9□□□□□ -2.27
LHX3Q9UBR4 AC008163.1-202ENST00000636004 2889 ntBASIC0.9□□□□□ -2.27
LHX3Q9UBR4 Y_RNA.203-201ENST00000364106 102 ntBASIC0.89□□□□□ -2.27
LHX3Q9UBR4 RNU6-450P-201ENST00000364654 107 ntBASIC0.89□□□□□ -2.27
LHX3Q9UBR4 Y_RNA.355-201ENST00000365462 98 ntBASIC0.89□□□□□ -2.27
LHX3Q9UBR4 MIR200A-201ENST00000384875 90 ntBASIC0.89□□□□□ -2.27
LHX3Q9UBR4 MIR15B-201ENST00000385045 98 ntBASIC0.89□□□□□ -2.27
LHX3Q9UBR4 Y_RNA.645-201ENST00000391229 102 ntBASIC0.89□□□□□ -2.27
LHX3Q9UBR4 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.89□□□□□ -2.27
LHX3Q9UBR4 HMGN2P32-201ENST00000444648 269 ntBASIC0.89□□□□□ -2.27
LHX3Q9UBR4 RNU7-21P-201ENST00000459430 62 ntBASIC0.89□□□□□ -2.27
LHX3Q9UBR4 SNORD124-201ENST00000459577 104 ntBASIC0.89□□□□□ -2.27
LHX3Q9UBR4 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.89□□□□□ -2.27
LHX3Q9UBR4 SEPT14P8-201ENST00000508026 178 ntBASIC0.89□□□□□ -2.27
LHX3Q9UBR4 SNORA74.3-201ENST00000517108 154 ntBASIC0.89□□□□□ -2.27
LHX3Q9UBR4 MIR4698-201ENST00000577795 80 ntBASIC0.89□□□□□ -2.27
LHX3Q9UBR4 FAM71BP1-201ENST00000604431 523 ntBASIC0.89□□□□□ -2.27
LHX3Q9UBR4 SNORD113-5-201ENST00000607261 78 ntBASIC0.89□□□□□ -2.27
LHX3Q9UBR4 JPX_2.1-201ENST00000614161 69 ntBASIC0.89□□□□□ -2.27
LHX3Q9UBR4 MIR548AY-201ENST00000617669 107 ntBASIC0.89□□□□□ -2.27
LHX3Q9UBR4 MIR6734-201ENST00000621166 68 ntBASIC0.89□□□□□ -2.27
LHX3Q9UBR4 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.89□□□□□ -2.27
LHX3Q9UBR4 AC068700.1-201ENST00000565862 3754 ntBASIC0.88□□□□□ -2.27
LHX3Q9UBR4 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.88□□□□□ -2.27
LHX3Q9UBR4 SNORD113-8-201ENST00000363497 74 ntBASIC0.88□□□□□ -2.27
LHX3Q9UBR4 MIR520E-201ENST00000384867 87 ntBASIC0.88□□□□□ -2.27
LHX3Q9UBR4 MIR520C-201ENST00000385005 87 ntBASIC0.88□□□□□ -2.27
LHX3Q9UBR4 SNORA75.2-201ENST00000391138 150 ntBASIC0.88□□□□□ -2.27
LHX3Q9UBR4 SNORA75.3-201ENST00000391231 150 ntBASIC0.88□□□□□ -2.27
LHX3Q9UBR4 MIR1278-201ENST00000408753 81 ntBASIC0.88□□□□□ -2.27
LHX3Q9UBR4 Y_RNA.602-201ENST00000410535 92 ntBASIC0.88□□□□□ -2.27
LHX3Q9UBR4 RNU2-14P-201ENST00000411053 191 ntBASIC0.88□□□□□ -2.27
LHX3Q9UBR4 PMCHL1-202ENST00000423102 261 ntBASIC0.88□□□□□ -2.27
LHX3Q9UBR4 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.88□□□□□ -2.27
LHX3Q9UBR4 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.88□□□□□ -2.27
LHX3Q9UBR4 Y_RNA.639-201ENST00000458981 102 ntBASIC0.88□□□□□ -2.27
LHX3Q9UBR4 RNU7-90P-201ENST00000459216 62 ntBASIC0.88□□□□□ -2.27
LHX3Q9UBR4 AC127455.1-201ENST00000565496 145 ntBASIC0.88□□□□□ -2.27
LHX3Q9UBR4 MIR6857-201ENST00000613267 93 ntBASIC0.88□□□□□ -2.27
LHX3Q9UBR4 AC134026.1-201ENST00000623249 2239 ntBASIC0.88□□□□□ -2.27
LHX3Q9UBR4 SNORA25.3-201ENST00000363205 127 ntBASIC0.87□□□□□ -2.27
LHX3Q9UBR4 Y_RNA.148-201ENST00000363557 117 ntBASIC0.87□□□□□ -2.27
LHX3Q9UBR4 RNU6-1209P-201ENST00000363655 107 ntBASIC0.87□□□□□ -2.27
LHX3Q9UBR4 RNU6-969P-201ENST00000383900 105 ntBASIC0.87□□□□□ -2.27
LHX3Q9UBR4 RNU7-141P-201ENST00000459304 62 ntBASIC0.87□□□□□ -2.27
LHX3Q9UBR4 RNU7-41P-201ENST00000515917 61 ntBASIC0.87□□□□□ -2.27
LHX3Q9UBR4 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.87□□□□□ -2.27
LHX3Q9UBR4 MIR4300-201ENST00000581016 96 ntBASIC0.87□□□□□ -2.27
LHX3Q9UBR4 MIR376A1-201ENST00000616574 68 ntBASIC0.87□□□□□ -2.27
LHX3Q9UBR4 MTND4P29-201ENST00000503122 1372 ntBASIC0.86□□□□□ -2.27
LHX3Q9UBR4 RNA5SP264-201ENST00000363115 107 ntBASIC0.86□□□□□ -2.27
LHX3Q9UBR4 SNORD14E-201ENST00000364009 85 ntBASIC0.86□□□□□ -2.27
LHX3Q9UBR4 RNU6-801P-201ENST00000364087 105 ntBASIC0.86□□□□□ -2.27
LHX3Q9UBR4 RNU6-867P-201ENST00000364956 107 ntBASIC0.86□□□□□ -2.27
LHX3Q9UBR4 Y_RNA.394-201ENST00000383942 103 ntBASIC0.86□□□□□ -2.27
LHX3Q9UBR4 RNU6-474P-201ENST00000384243 107 ntBASIC0.86□□□□□ -2.27
LHX3Q9UBR4 RNU6-102P-201ENST00000384485 104 ntBASIC0.86□□□□□ -2.27
LHX3Q9UBR4 SNORA36B-201ENST00000410438 131 ntBASIC0.86□□□□□ -2.27
LHX3Q9UBR4 POLR2J4-204ENST00000418424 324 ntBASIC0.86□□□□□ -2.27
LHX3Q9UBR4 Y_RNA.715-201ENST00000517082 110 ntBASIC0.86□□□□□ -2.27
LHX3Q9UBR4 C8orf59P2-201ENST00000603441 271 ntBASIC0.86□□□□□ -2.27
LHX3Q9UBR4 AC104695.3-201ENST00000604052 296 ntBASIC0.86□□□□□ -2.27
LHX3Q9UBR4 RAC1P9-201ENST00000604990 392 ntBASIC0.86□□□□□ -2.27
LHX3Q9UBR4 AC211469.2-201ENST00000605461 205 ntBASIC0.86□□□□□ -2.27
LHX3Q9UBR4 AC007742.2-201ENST00000618226 398 ntBASIC0.86□□□□□ -2.27
LHX3Q9UBR4 RNU5E-4P-201ENST00000364931 120 ntBASIC0.85□□□□□ -2.27
LHX3Q9UBR4 Y_RNA.330-201ENST00000365230 109 ntBASIC0.85□□□□□ -2.27
LHX3Q9UBR4 Y_RNA.389-201ENST00000383924 113 ntBASIC0.85□□□□□ -2.27
LHX3Q9UBR4 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
LHX3Q9UBR4 RNU6-823P-201ENST00000391042 103 ntBASIC0.85□□□□□ -2.27
LHX3Q9UBR4 MIR942-201ENST00000401111 86 ntBASIC0.85□□□□□ -2.27
LHX3Q9UBR4 SNORD123-201ENST00000459473 70 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 139.7 ms