Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 MIR1302-11-201ENST00000408051 138 ntBASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 MIR1302-9-201ENST00000408365 138 ntBASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 MIR1302-10-201ENST00000408734 138 ntBASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 U8.19-201ENST00000459095 133 ntBASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 RNU7-21P-201ENST00000459430 62 ntBASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 RNU7-41P-201ENST00000515917 61 ntBASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 RNU7-115P-201ENST00000516433 55 ntBASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 RNU6-1046P-201ENST00000516538 107 ntBASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 DEFB108E-201ENST00000524692 240 ntBASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 MIR4452-201ENST00000583004 71 ntBASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 LARP7P1-201ENST00000605576 316 ntBASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 AL020996.3-201ENST00000606617 222 ntBASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 MIR1302-2-201ENST00000607096 138 ntBASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 Y_RNA.31-201ENST00000362574 102 ntBASIC0.9□□□□□ -2.27
VPS54Q9P1Q0 SNORD114-24-201ENST00000365029 72 ntBASIC0.9□□□□□ -2.27
VPS54Q9P1Q0 MTATP6P23-201ENST00000440153 476 ntBASIC0.9□□□□□ -2.27
VPS54Q9P1Q0 RPL39P28-201ENST00000465655 155 ntBASIC0.9□□□□□ -2.27
VPS54Q9P1Q0 RNU6-1170P-201ENST00000515974 106 ntBASIC0.9□□□□□ -2.27
VPS54Q9P1Q0 Y_RNA.714-201ENST00000517065 90 ntBASIC0.9□□□□□ -2.27
VPS54Q9P1Q0 AC013244.2-201ENST00000603396 103 ntBASIC0.9□□□□□ -2.27
VPS54Q9P1Q0 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.89□□□□□ -2.27
VPS54Q9P1Q0 RNA5SP264-201ENST00000363115 107 ntBASIC0.89□□□□□ -2.27
VPS54Q9P1Q0 RNU4-80P-201ENST00000363200 141 ntBASIC0.89□□□□□ -2.27
VPS54Q9P1Q0 RNU6-1209P-201ENST00000363655 107 ntBASIC0.89□□□□□ -2.27
VPS54Q9P1Q0 MIR1278-201ENST00000408753 81 ntBASIC0.89□□□□□ -2.27
VPS54Q9P1Q0 RNU2-14P-201ENST00000411053 191 ntBASIC0.89□□□□□ -2.27
VPS54Q9P1Q0 POLR2J4-204ENST00000418424 324 ntBASIC0.89□□□□□ -2.27
VPS54Q9P1Q0 SNORD123-201ENST00000459473 70 ntBASIC0.89□□□□□ -2.27
VPS54Q9P1Q0 Y_RNA.713-201ENST00000517013 96 ntBASIC0.89□□□□□ -2.27
VPS54Q9P1Q0 AC127455.1-201ENST00000565496 145 ntBASIC0.89□□□□□ -2.27
VPS54Q9P1Q0 MIR4764-201ENST00000580680 88 ntBASIC0.89□□□□□ -2.27
VPS54Q9P1Q0 MIR548AY-201ENST00000617669 107 ntBASIC0.89□□□□□ -2.27
VPS54Q9P1Q0 Y_RNA.330-201ENST00000365230 109 ntBASIC0.88□□□□□ -2.27
VPS54Q9P1Q0 Y_RNA.395-201ENST00000383945 109 ntBASIC0.88□□□□□ -2.27
VPS54Q9P1Q0 Y_RNA.424-201ENST00000384063 103 ntBASIC0.88□□□□□ -2.27
VPS54Q9P1Q0 POLR2KP2-201ENST00000438155 177 ntBASIC0.88□□□□□ -2.27
VPS54Q9P1Q0 HMGN2P32-201ENST00000444648 269 ntBASIC0.88□□□□□ -2.27
VPS54Q9P1Q0 MTND4P19-201ENST00000446659 478 ntBASIC0.88□□□□□ -2.27
VPS54Q9P1Q0 RNU7-90P-201ENST00000459216 62 ntBASIC0.88□□□□□ -2.27
VPS54Q9P1Q0 RPS29P1-201ENST00000465274 159 ntBASIC0.88□□□□□ -2.27
VPS54Q9P1Q0 SEPT14P8-201ENST00000508026 178 ntBASIC0.88□□□□□ -2.27
VPS54Q9P1Q0 ACA64.5-201ENST00000516207 127 ntBASIC0.88□□□□□ -2.27
VPS54Q9P1Q0 RNU6-397P-201ENST00000516226 104 ntBASIC0.88□□□□□ -2.27
VPS54Q9P1Q0 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
VPS54Q9P1Q0 Y_RNA.148-201ENST00000363557 117 ntBASIC0.87□□□□□ -2.27
VPS54Q9P1Q0 SNORD14E-201ENST00000364009 85 ntBASIC0.87□□□□□ -2.27
VPS54Q9P1Q0 RNU6-801P-201ENST00000364087 105 ntBASIC0.87□□□□□ -2.27
VPS54Q9P1Q0 Y_RNA.796-201ENST00000364268 102 ntBASIC0.87□□□□□ -2.27
VPS54Q9P1Q0 Y_RNA.226-201ENST00000364337 114 ntBASIC0.87□□□□□ -2.27
VPS54Q9P1Q0 Y_RNA.799-201ENST00000364992 102 ntBASIC0.87□□□□□ -2.27
VPS54Q9P1Q0 MIR200A-201ENST00000384875 90 ntBASIC0.87□□□□□ -2.27
VPS54Q9P1Q0 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.87□□□□□ -2.27
VPS54Q9P1Q0 RNU7-141P-201ENST00000459304 62 ntBASIC0.87□□□□□ -2.27
VPS54Q9P1Q0 NDUFA4P2-201ENST00000489989 244 ntBASIC0.87□□□□□ -2.27
VPS54Q9P1Q0 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.87□□□□□ -2.27
VPS54Q9P1Q0 RNU6-475P-201ENST00000516073 104 ntBASIC0.87□□□□□ -2.27
VPS54Q9P1Q0 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.87□□□□□ -2.27
VPS54Q9P1Q0 AC136628.3-201ENST00000521868 290 ntBASIC0.87□□□□□ -2.27
VPS54Q9P1Q0 AC124312.5-201ENST00000604451 268 ntBASIC0.87□□□□□ -2.27
VPS54Q9P1Q0 SNORD113-5-201ENST00000607261 78 ntBASIC0.87□□□□□ -2.27
VPS54Q9P1Q0 AC108706.1-201ENST00000611053 297 ntBASIC0.87□□□□□ -2.27
VPS54Q9P1Q0 JPX_2.1-201ENST00000614161 69 ntBASIC0.87□□□□□ -2.27
VPS54Q9P1Q0 AC134026.1-201ENST00000623249 2239 ntBASIC0.87□□□□□ -2.27
VPS54Q9P1Q0 MIR103A2-201ENST00000362154 78 ntBASIC0.86□□□□□ -2.27
VPS54Q9P1Q0 SNORD42.2-201ENST00000365570 69 ntBASIC0.86□□□□□ -2.27
VPS54Q9P1Q0 Y_RNA.645-201ENST00000391229 102 ntBASIC0.86□□□□□ -2.27
VPS54Q9P1Q0 SNORA36B-201ENST00000410438 131 ntBASIC0.86□□□□□ -2.27
VPS54Q9P1Q0 PDCD5P2-201ENST00000507570 312 ntBASIC0.86□□□□□ -2.27
VPS54Q9P1Q0 AP003716.2-201ENST00000528260 108 ntBASIC0.86□□□□□ -2.27
VPS54Q9P1Q0 SNORD113-8-201ENST00000363497 74 ntBASIC0.85□□□□□ -2.27
VPS54Q9P1Q0 Y_RNA.224-201ENST00000364308 111 ntBASIC0.85□□□□□ -2.27
VPS54Q9P1Q0 RNU6-450P-201ENST00000364654 107 ntBASIC0.85□□□□□ -2.27
VPS54Q9P1Q0 RNU1-36P-201ENST00000365130 165 ntBASIC0.85□□□□□ -2.27
VPS54Q9P1Q0 SNORA26.5-201ENST00000391215 123 ntBASIC0.85□□□□□ -2.27
VPS54Q9P1Q0 MIR942-201ENST00000401111 86 ntBASIC0.85□□□□□ -2.27
VPS54Q9P1Q0 MIR1287-201ENST00000408492 90 ntBASIC0.85□□□□□ -2.27
VPS54Q9P1Q0 MIR1185-1-201ENST00000408598 86 ntBASIC0.85□□□□□ -2.27
VPS54Q9P1Q0 Y_RNA.602-201ENST00000410535 92 ntBASIC0.85□□□□□ -2.27
VPS54Q9P1Q0 AC004941.2-201ENST00000427009 228 ntBASIC0.85□□□□□ -2.27
VPS54Q9P1Q0 AC023827.1-201ENST00000569247 97 ntBASIC0.85□□□□□ -2.27
VPS54Q9P1Q0 MIR548AR-201ENST00000582191 57 ntBASIC0.85□□□□□ -2.27
VPS54Q9P1Q0 AC104695.3-201ENST00000604052 296 ntBASIC0.85□□□□□ -2.27
VPS54Q9P1Q0 AC090971.5-201ENST00000621102 293 ntBASIC0.85□□□□□ -2.27
VPS54Q9P1Q0 Y_RNA.431-201ENST00000384086 102 ntBASIC0.84□□□□□ -2.27
VPS54Q9P1Q0 SNORA72.4-201ENST00000384174 132 ntBASIC0.84□□□□□ -2.27
VPS54Q9P1Q0 RNU6-102P-201ENST00000384485 104 ntBASIC0.84□□□□□ -2.27
VPS54Q9P1Q0 Y_RNA.509-201ENST00000384506 99 ntBASIC0.84□□□□□ -2.27
VPS54Q9P1Q0 MIR15B-201ENST00000385045 98 ntBASIC0.84□□□□□ -2.27
VPS54Q9P1Q0 SNORD28B-201ENST00000390993 75 ntBASIC0.84□□□□□ -2.27
VPS54Q9P1Q0 RNA5SP247-201ENST00000411181 105 ntBASIC0.84□□□□□ -2.27
VPS54Q9P1Q0 MTND4LP11-201ENST00000422184 280 ntBASIC0.84□□□□□ -2.27
VPS54Q9P1Q0 PMCHL1-202ENST00000423102 261 ntBASIC0.84□□□□□ -2.27
VPS54Q9P1Q0 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.84□□□□□ -2.27
VPS54Q9P1Q0 Y_RNA.639-201ENST00000458981 102 ntBASIC0.84□□□□□ -2.27
VPS54Q9P1Q0 RNU6-191P-201ENST00000516295 94 ntBASIC0.84□□□□□ -2.27
VPS54Q9P1Q0 RNU7-43P-201ENST00000516554 64 ntBASIC0.84□□□□□ -2.27
VPS54Q9P1Q0 RPL23AP91-201ENST00000569211 455 ntBASIC0.84□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms