Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 Y_RNA.777-201ENST00000516982 102 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 RNU6-1096P-201ENST00000517089 102 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 RNU6-111P-201ENST00000517179 105 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 AC022254.1-201ENST00000567857 235 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 Y_RNA.771-201ENST00000598668 102 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 AC005972.2-201ENST00000604690 348 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 AP000942.4-201ENST00000604811 241 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 AC037487.3-201ENST00000606668 112 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 Y_RNA.789-201ENST00000622480 102 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 Y_RNA.54-201ENST00000362766 105 ntBASIC1.47□□□□□ -2.17
UPF3AQ9H1J1 RNU6-338P-201ENST00000383888 105 ntBASIC1.47□□□□□ -2.17
UPF3AQ9H1J1 Y_RNA.401-201ENST00000383965 117 ntBASIC1.47□□□□□ -2.17
UPF3AQ9H1J1 RNU6-1323P-201ENST00000384025 107 ntBASIC1.47□□□□□ -2.17
UPF3AQ9H1J1 RNU6-211P-201ENST00000384047 107 ntBASIC1.47□□□□□ -2.17
UPF3AQ9H1J1 RNU6-514P-201ENST00000384208 107 ntBASIC1.47□□□□□ -2.17
UPF3AQ9H1J1 MT-TG-201ENST00000387429 68 ntBASIC1.47□□□□□ -2.17
UPF3AQ9H1J1 MTCO2P33-201ENST00000402100 465 ntBASIC1.47□□□□□ -2.17
UPF3AQ9H1J1 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
UPF3AQ9H1J1 AC024405.2-202ENST00000532731 184 ntBASIC1.47□□□□□ -2.17
UPF3AQ9H1J1 AL162424.1-201ENST00000602325 221 ntBASIC1.47□□□□□ -2.17
UPF3AQ9H1J1 AL929325.1-201ENST00000603096 117 ntBASIC1.47□□□□□ -2.17
UPF3AQ9H1J1 AP003357.1-201ENST00000604497 148 ntBASIC1.47□□□□□ -2.17
UPF3AQ9H1J1 RMST_2.1-201ENST00000617263 136 ntBASIC1.47□□□□□ -2.17
UPF3AQ9H1J1 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.47□□□□□ -2.17
UPF3AQ9H1J1 AC100821.1-201ENST00000523153 2479 ntBASIC1.46□□□□□ -2.18
UPF3AQ9H1J1 SNORA1B-201ENST00000362535 133 ntBASIC1.46□□□□□ -2.18
UPF3AQ9H1J1 Y_RNA.188-201ENST00000363952 111 ntBASIC1.46□□□□□ -2.18
UPF3AQ9H1J1 RNU1-93P-201ENST00000364704 169 ntBASIC1.46□□□□□ -2.18
UPF3AQ9H1J1 RNU6-203P-201ENST00000384038 104 ntBASIC1.46□□□□□ -2.18
UPF3AQ9H1J1 RNU6-1248P-201ENST00000391096 64 ntBASIC1.46□□□□□ -2.18
UPF3AQ9H1J1 MIR548H3-201ENST00000408771 118 ntBASIC1.46□□□□□ -2.18
UPF3AQ9H1J1 AC010154.1-201ENST00000425857 269 ntBASIC1.46□□□□□ -2.18
UPF3AQ9H1J1 AC024067.1-201ENST00000426199 223 ntBASIC1.46□□□□□ -2.18
UPF3AQ9H1J1 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.46□□□□□ -2.18
UPF3AQ9H1J1 RNU6-341P-201ENST00000516973 96 ntBASIC1.46□□□□□ -2.18
UPF3AQ9H1J1 RNU6-1271P-201ENST00000517049 105 ntBASIC1.46□□□□□ -2.18
UPF3AQ9H1J1 AC127455.1-201ENST00000565496 145 ntBASIC1.46□□□□□ -2.18
UPF3AQ9H1J1 AC005357.1-201ENST00000588399 301 ntBASIC1.46□□□□□ -2.18
UPF3AQ9H1J1 AC006006.1-201ENST00000603082 144 ntBASIC1.46□□□□□ -2.18
UPF3AQ9H1J1 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.46□□□□□ -2.18
UPF3AQ9H1J1 AC013791.1-201ENST00000616619 62 ntBASIC1.46□□□□□ -2.18
UPF3AQ9H1J1 MIR548AY-201ENST00000617669 107 ntBASIC1.46□□□□□ -2.18
UPF3AQ9H1J1 U1.36-201ENST00000620684 176 ntBASIC1.46□□□□□ -2.18
UPF3AQ9H1J1 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.46□□□□□ -2.18
UPF3AQ9H1J1 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
UPF3AQ9H1J1 RNU4-10P-201ENST00000364383 140 ntBASIC1.45□□□□□ -2.18
UPF3AQ9H1J1 Y_RNA.267-201ENST00000364679 109 ntBASIC1.45□□□□□ -2.18
UPF3AQ9H1J1 RNU6-1080P-201ENST00000383982 107 ntBASIC1.45□□□□□ -2.18
UPF3AQ9H1J1 AC245047.3-201ENST00000429428 127 ntBASIC1.45□□□□□ -2.18
UPF3AQ9H1J1 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.45□□□□□ -2.18
UPF3AQ9H1J1 RPS29P29-201ENST00000456396 171 ntBASIC1.45□□□□□ -2.18
UPF3AQ9H1J1 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.45□□□□□ -2.18
UPF3AQ9H1J1 AC011604.1-201ENST00000545978 196 ntBASIC1.45□□□□□ -2.18
UPF3AQ9H1J1 POLR3GP1-201ENST00000594073 261 ntBASIC1.45□□□□□ -2.18
UPF3AQ9H1J1 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.45□□□□□ -2.18
UPF3AQ9H1J1 MIR8054-201ENST00000620877 86 ntBASIC1.45□□□□□ -2.18
UPF3AQ9H1J1 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.45□□□□□ -2.18
UPF3AQ9H1J1 RNU6-439P-201ENST00000384188 106 ntBASIC1.44□□□□□ -2.18
UPF3AQ9H1J1 Y_RNA.540-201ENST00000384638 111 ntBASIC1.44□□□□□ -2.18
UPF3AQ9H1J1 Y_RNA.572-201ENST00000384757 98 ntBASIC1.44□□□□□ -2.18
UPF3AQ9H1J1 MIR520A-201ENST00000384862 85 ntBASIC1.44□□□□□ -2.18
UPF3AQ9H1J1 SNORA36B-201ENST00000410438 131 ntBASIC1.44□□□□□ -2.18
UPF3AQ9H1J1 Y_RNA.618-201ENST00000410949 107 ntBASIC1.44□□□□□ -2.18
UPF3AQ9H1J1 AC099513.1-201ENST00000490423 301 ntBASIC1.44□□□□□ -2.18
UPF3AQ9H1J1 MIR5692C2-201ENST00000577959 77 ntBASIC1.44□□□□□ -2.18
UPF3AQ9H1J1 AL161722.3-201ENST00000605789 2983 ntBASIC1.44□□□□□ -2.18
UPF3AQ9H1J1 BX284668.6-201ENST00000606899 438 ntBASIC1.44□□□□□ -2.18
UPF3AQ9H1J1 AC103810.8-201ENST00000607347 118 ntBASIC1.44□□□□□ -2.18
UPF3AQ9H1J1 AC078938.1-201ENST00000620993 318 ntBASIC1.44□□□□□ -2.18
UPF3AQ9H1J1 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.44□□□□□ -2.18
UPF3AQ9H1J1 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
UPF3AQ9H1J1 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.44□□□□□ -2.18
UPF3AQ9H1J1 Y_RNA.65-201ENST00000362846 100 ntBASIC1.43□□□□□ -2.18
UPF3AQ9H1J1 RNU6-899P-201ENST00000363947 107 ntBASIC1.43□□□□□ -2.18
UPF3AQ9H1J1 RNY1-201ENST00000364228 113 ntBASIC1.43□□□□□ -2.18
UPF3AQ9H1J1 Y_RNA.466-201ENST00000384294 113 ntBASIC1.43□□□□□ -2.18
UPF3AQ9H1J1 SNORA72-201ENST00000384339 132 ntBASIC1.43□□□□□ -2.18
UPF3AQ9H1J1 Y_RNA.478-201ENST00000384358 107 ntBASIC1.43□□□□□ -2.18
UPF3AQ9H1J1 MIR520G-201ENST00000385064 90 ntBASIC1.43□□□□□ -2.18
UPF3AQ9H1J1 RNU6ATAC23P-201ENST00000408448 123 ntBASIC1.43□□□□□ -2.18
UPF3AQ9H1J1 MIR1278-201ENST00000408753 81 ntBASIC1.43□□□□□ -2.18
UPF3AQ9H1J1 Y_RNA.590-201ENST00000410140 107 ntBASIC1.43□□□□□ -2.18
UPF3AQ9H1J1 RNU6-955P-201ENST00000410497 104 ntBASIC1.43□□□□□ -2.18
UPF3AQ9H1J1 RN7SKP51-201ENST00000410781 304 ntBASIC1.43□□□□□ -2.18
UPF3AQ9H1J1 Z98949.2-201ENST00000440996 144 ntBASIC1.43□□□□□ -2.18
UPF3AQ9H1J1 RNU6-388P-201ENST00000517012 105 ntBASIC1.43□□□□□ -2.18
UPF3AQ9H1J1 RNU6-389P-201ENST00000517048 105 ntBASIC1.43□□□□□ -2.18
UPF3AQ9H1J1 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.43□□□□□ -2.18
UPF3AQ9H1J1 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.43□□□□□ -2.18
UPF3AQ9H1J1 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
UPF3AQ9H1J1 RNU6-653P-201ENST00000363074 106 ntBASIC1.42□□□□□ -2.18
UPF3AQ9H1J1 SNORA20.1-201ENST00000364790 130 ntBASIC1.42□□□□□ -2.18
UPF3AQ9H1J1 Y_RNA.292-201ENST00000364904 97 ntBASIC1.42□□□□□ -2.18
UPF3AQ9H1J1 RNY4P28-201ENST00000365281 93 ntBASIC1.42□□□□□ -2.18
UPF3AQ9H1J1 RNU6-42P-201ENST00000384165 107 ntBASIC1.42□□□□□ -2.18
UPF3AQ9H1J1 RNU6-440P-201ENST00000390882 105 ntBASIC1.42□□□□□ -2.18
UPF3AQ9H1J1 AC233266.1-201ENST00000454518 96 ntBASIC1.42□□□□□ -2.18
UPF3AQ9H1J1 AC242852.1-201ENST00000612151 96 ntBASIC1.42□□□□□ -2.18
UPF3AQ9H1J1 AL442067.1-201ENST00000613261 223 ntBASIC1.42□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 169.5 ms