Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RNA5SP210-201ENST00000391034 120 ntBASIC2.47□□□□□ -2.01
CLIP3Q96DZ5 SNORA11.4-201ENST00000408823 129 ntBASIC2.47□□□□□ -2.01
CLIP3Q96DZ5 RPS26P45-201ENST00000471748 340 ntBASIC2.47□□□□□ -2.01
CLIP3Q96DZ5 AL670379.3-201ENST00000605040 251 ntBASIC2.47□□□□□ -2.01
CLIP3Q96DZ5 AC022513.1-201ENST00000624512 117 ntBASIC2.47□□□□□ -2.01
CLIP3Q96DZ5 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.47□□□□□ -2.01
CLIP3Q96DZ5 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
CLIP3Q96DZ5 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
CLIP3Q96DZ5 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
CLIP3Q96DZ5 Y_RNA.35-201ENST00000362601 101 ntBASIC2.46□□□□□ -2.02
CLIP3Q96DZ5 RNU6-1209P-201ENST00000363655 107 ntBASIC2.46□□□□□ -2.02
CLIP3Q96DZ5 RNU4-13P-201ENST00000364019 141 ntBASIC2.46□□□□□ -2.02
CLIP3Q96DZ5 RNU1-51P-201ENST00000365345 176 ntBASIC2.46□□□□□ -2.02
CLIP3Q96DZ5 RNU6-1080P-201ENST00000383982 107 ntBASIC2.46□□□□□ -2.02
CLIP3Q96DZ5 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
CLIP3Q96DZ5 AL117342.1-201ENST00000404861 406 ntBASIC2.46□□□□□ -2.02
CLIP3Q96DZ5 CST2P1-201ENST00000425770 87 ntBASIC2.46□□□□□ -2.02
CLIP3Q96DZ5 RPS27P22-201ENST00000478056 241 ntBASIC2.46□□□□□ -2.02
CLIP3Q96DZ5 AC097462.1-201ENST00000514125 324 ntBASIC2.46□□□□□ -2.02
CLIP3Q96DZ5 RNU6-1061P-201ENST00000516530 99 ntBASIC2.46□□□□□ -2.02
CLIP3Q96DZ5 Y_RNA.690-201ENST00000516603 95 ntBASIC2.46□□□□□ -2.02
CLIP3Q96DZ5 AC133485.4-201ENST00000561835 220 ntBASIC2.46□□□□□ -2.02
CLIP3Q96DZ5 AC138907.4-201ENST00000570107 226 ntBASIC2.46□□□□□ -2.02
CLIP3Q96DZ5 AC091178.2-201ENST00000584401 117 ntBASIC2.46□□□□□ -2.02
CLIP3Q96DZ5 U1.36-201ENST00000620684 176 ntBASIC2.46□□□□□ -2.02
CLIP3Q96DZ5 RNU6-862P-201ENST00000362804 105 ntBASIC2.45□□□□□ -2.02
CLIP3Q96DZ5 Y_RNA.66-201ENST00000362862 102 ntBASIC2.45□□□□□ -2.02
CLIP3Q96DZ5 RNU6-1138P-201ENST00000365359 106 ntBASIC2.45□□□□□ -2.02
CLIP3Q96DZ5 RNA5SP89-201ENST00000410300 108 ntBASIC2.45□□□□□ -2.02
CLIP3Q96DZ5 RNU2-70P-201ENST00000410718 179 ntBASIC2.45□□□□□ -2.02
CLIP3Q96DZ5 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.45□□□□□ -2.02
CLIP3Q96DZ5 AC079804.2-201ENST00000490376 200 ntBASIC2.45□□□□□ -2.02
CLIP3Q96DZ5 RNA5SP282-201ENST00000516355 108 ntBASIC2.45□□□□□ -2.02
CLIP3Q96DZ5 AC007751.1-201ENST00000529260 376 ntBASIC2.45□□□□□ -2.02
CLIP3Q96DZ5 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.45□□□□□ -2.02
CLIP3Q96DZ5 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
CLIP3Q96DZ5 Y_RNA.52-201ENST00000362760 96 ntBASIC2.44□□□□□ -2.02
CLIP3Q96DZ5 RNU1-96P-201ENST00000364163 162 ntBASIC2.44□□□□□ -2.02
CLIP3Q96DZ5 Y_RNA.486-201ENST00000384398 107 ntBASIC2.44□□□□□ -2.02
CLIP3Q96DZ5 SNORD116-21-201ENST00000384507 92 ntBASIC2.44□□□□□ -2.02
CLIP3Q96DZ5 MIR515-2-201ENST00000384883 83 ntBASIC2.44□□□□□ -2.02
CLIP3Q96DZ5 MIR515-1-201ENST00000384884 83 ntBASIC2.44□□□□□ -2.02
CLIP3Q96DZ5 SNORA48.1-201ENST00000390879 135 ntBASIC2.44□□□□□ -2.02
CLIP3Q96DZ5 MIR891A-201ENST00000401237 79 ntBASIC2.44□□□□□ -2.02
CLIP3Q96DZ5 RNA5SP501-201ENST00000410990 112 ntBASIC2.44□□□□□ -2.02
CLIP3Q96DZ5 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.44□□□□□ -2.02
CLIP3Q96DZ5 AC099677.2-201ENST00000436385 175 ntBASIC2.44□□□□□ -2.02
CLIP3Q96DZ5 Y_RNA.651-201ENST00000459380 103 ntBASIC2.44□□□□□ -2.02
CLIP3Q96DZ5 RN7SL429P-201ENST00000479090 223 ntBASIC2.44□□□□□ -2.02
CLIP3Q96DZ5 RN7SL489P-201ENST00000486185 223 ntBASIC2.44□□□□□ -2.02
CLIP3Q96DZ5 RN7SL327P-201ENST00000488659 223 ntBASIC2.44□□□□□ -2.02
CLIP3Q96DZ5 RNU7-149P-201ENST00000516739 59 ntBASIC2.44□□□□□ -2.02
CLIP3Q96DZ5 IGKV1-22-201ENST00000524313 326 ntBASIC2.44□□□□□ -2.02
CLIP3Q96DZ5 MIR5694-201ENST00000581190 76 ntBASIC2.44□□□□□ -2.02
CLIP3Q96DZ5 MIR2681-201ENST00000581814 105 ntBASIC2.44□□□□□ -2.02
CLIP3Q96DZ5 RN7SL853P-201ENST00000617250 223 ntBASIC2.44□□□□□ -2.02
CLIP3Q96DZ5 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.44□□□□□ -2.02
CLIP3Q96DZ5 AC080100.1-201ENST00000624239 5356 ntBASIC2.43□□□□□ -2.02
CLIP3Q96DZ5 RNU6-647P-201ENST00000364243 107 ntBASIC2.43□□□□□ -2.02
CLIP3Q96DZ5 SNORA16B-201ENST00000364674 135 ntBASIC2.43□□□□□ -2.02
CLIP3Q96DZ5 Y_RNA.309-201ENST00000365046 111 ntBASIC2.43□□□□□ -2.02
CLIP3Q96DZ5 MIR624-201ENST00000385217 97 ntBASIC2.43□□□□□ -2.02
CLIP3Q96DZ5 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.43□□□□□ -2.02
CLIP3Q96DZ5 AC008413.1-201ENST00000511864 177 ntBASIC2.43□□□□□ -2.02
CLIP3Q96DZ5 RN7SKP19-201ENST00000516016 252 ntBASIC2.43□□□□□ -2.02
CLIP3Q96DZ5 RNU6-168P-201ENST00000516189 101 ntBASIC2.43□□□□□ -2.02
CLIP3Q96DZ5 AC011604.1-201ENST00000545978 196 ntBASIC2.43□□□□□ -2.02
CLIP3Q96DZ5 MIR4438-201ENST00000585271 93 ntBASIC2.43□□□□□ -2.02
CLIP3Q96DZ5 AL365205.2-201ENST00000594586 68 ntBASIC2.43□□□□□ -2.02
CLIP3Q96DZ5 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.43□□□□□ -2.02
CLIP3Q96DZ5 U4.3-201ENST00000621047 82 ntBASIC2.43□□□□□ -2.02
CLIP3Q96DZ5 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
CLIP3Q96DZ5 Z82195.2-201ENST00000612348 18351 ntBASIC2.43□□□□□ -2.02
CLIP3Q96DZ5 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
CLIP3Q96DZ5 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.42□□□□□ -2.02
CLIP3Q96DZ5 MIR27B-201ENST00000385129 97 ntBASIC2.42□□□□□ -2.02
CLIP3Q96DZ5 MIR548A3-201ENST00000385297 97 ntBASIC2.42□□□□□ -2.02
CLIP3Q96DZ5 NDUFA4P2-201ENST00000489989 244 ntBASIC2.42□□□□□ -2.02
CLIP3Q96DZ5 RNA5SP320-201ENST00000516263 124 ntBASIC2.42□□□□□ -2.02
CLIP3Q96DZ5 RNVU1-2-201ENST00000516326 135 ntBASIC2.42□□□□□ -2.02
CLIP3Q96DZ5 RNU7-172P-201ENST00000517125 64 ntBASIC2.42□□□□□ -2.02
CLIP3Q96DZ5 AC069114.2-201ENST00000604699 304 ntBASIC2.42□□□□□ -2.02
CLIP3Q96DZ5 Pinc.1-201ENST00000616452 154 ntBASIC2.42□□□□□ -2.02
CLIP3Q96DZ5 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.42□□□□□ -2.02
CLIP3Q96DZ5 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.42□□□□□ -2.02
CLIP3Q96DZ5 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
CLIP3Q96DZ5 TRBV12-1-201ENST00000479785 344 ntBASIC2.41□□□□□ -2.02
CLIP3Q96DZ5 OR9P1P-201ENST00000496431 281 ntBASIC2.41□□□□□ -2.02
CLIP3Q96DZ5 RNA5SP236-201ENST00000516169 116 ntBASIC2.41□□□□□ -2.02
CLIP3Q96DZ5 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.41□□□□□ -2.02
CLIP3Q96DZ5 MIR5094-201ENST00000578766 85 ntBASIC2.41□□□□□ -2.02
CLIP3Q96DZ5 AL022345.2-201ENST00000606307 135 ntBASIC2.41□□□□□ -2.02
CLIP3Q96DZ5 U6.73-201ENST00000619194 103 ntBASIC2.41□□□□□ -2.02
CLIP3Q96DZ5 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.41□□□□□ -2.02
CLIP3Q96DZ5 CTSLP2-204ENST00000629029 392 ntBASIC2.41□□□□□ -2.02
CLIP3Q96DZ5 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.41□□□□□ -2.02
CLIP3Q96DZ5 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
CLIP3Q96DZ5 AC008555.8-201ENST00000623602 2168 ntBASIC2.41□□□□□ -2.02
CLIP3Q96DZ5 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
CLIP3Q96DZ5 SNORD18B-201ENST00000365659 72 ntBASIC2.4□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 176.5 ms